NO19G02120, NO19G02120 (gene) Nannochloropsis oceanica

Overview
NameNO19G02120
Unique NameNO19G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1241
Alignment locationchr19:608728..609968 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:608728..609968 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Homology
BLAST of NO19G02120 vs. NCBI_GenBank
Match: XP_005853791.1 (hypothetical protein NGA_2112100, partial [Nannochloropsis gaditana CCMP526] >EKU22571.1 hypothetical protein NGA_2112100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 225.7 bits (574), Expect = 1.500e-55
Identity = 126/232 (54.31%), Postives = 147/232 (63.36%), Query Frame = 0
Query:    1 MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWGMLARHMYPDRKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGRENEDTTLLGMIELSLQPTTGLPPPLLPLPPPIKRFLALLGFPVHPYISNLLVDASVRRQGHAARLVAHAESVAREDGFNLIFLHADGDYRPAVKLYETLGYKGGEEXXXXXXXXRRGWVEKWVGMKLRYFRKEL 233
            M  SDL AVV LAAREF PLNEL EYGG  S G  E+ EAW LRQ V WGMLAR++YPD  DH+V LL+E + G         YR G                      ELSLQPTTGLPPPL PL P +K   ALLG+P+ PYISNLLVD +VRRQGHAARL+A AE+ AR  G + ++LHAD DY PAV+LYE LGY+             R WV++W G++LRY RKEL
Sbjct:    2 MSLSDLSAVVLLAAREFTPLNELAEYGGTPSGGLVEEFEAWGLRQKVRWGMLARYLYPD--DHEVLLLVEGEEG--------VYR-GXXXXXXXXXXXXXXXXXXXXXXELSLQPTTGLPPPLFPLSPAVKGLFALLGWPLQPYISNLLVDVTVRRQGHAARLLAVAEAEARARGHSWVYLHADSDYLPAVRLYERLGYR--------DVGRGRAWVDRWTGLRLRYMRKEL 214          
BLAST of NO19G02120 vs. NCBI_GenBank
Match: EWM23678.1 (hypothetical protein Naga_100030g3 [Nannochloropsis gaditana])

HSP 1 Score: 95.1 bits (235), Expect = 3.000e-16
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    1 MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWGMLARHMYPDRKDHQVFLLLEEQGG 75
            M  SDL AVV LAAREF PLNEL EYGG  S G  E+ EAW LRQ V WGMLAR++YPD  DH+V LL+E + G
Sbjct:  128 MSLSDLSAVVLLAAREFTPLNELAEYGGTPSGGLVEEFEAWGLRQKVRWGMLARYLYPD--DHEVLLLVEGEEG 199          
BLAST of NO19G02120 vs. NCBI_GenBank
Match: CBN78537.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15
Identity = 61/164 (37.20%), Postives = 88/164 (53.66%), Query Frame = 0
Query:   38 VEAWWLRQNVYWGMLARHMY-PDRKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGRENEDTTLLGMIELSLQPTTGLPPPLLPLPPPIKRFLALLGFPVHPYISNLLVDASVRRQGHAARLVAHAESVAREDGFNLIFLHADGDYRPAVKLYETLGYK 201
            +E  WLR  + WG   R  +    +DH+VF + +E              K + +G  +G+G  ++   L  + E+SLQ   G   P  P+P   KR +   G PV PYISN+LV  + RRQG A RL+   E  AR+ GF  ++LH D  Y PAV++YET+GY+
Sbjct:   60 LEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDE--------------KARNLG-GDGEGGSSK-PPLAALAEISLQVPNGKTSPPFPVPLWYKRIVGWPG-PVLPYISNVLVHRNARRQGLANRLMLRCEKQARDWGFTQVYLHVDLTYYPAVRMYETMGYE 206          
BLAST of NO19G02120 vs. NCBI_GenBank
Match: GAX10388.1 (hypothetical protein FisN_3Lh608 [Fistulifera solaris])

HSP 1 Score: 84.3 bits (207), Expect = 5.300e-13
Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 0
Query:    1 MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWGM---LARHMYPDRKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGRENEDTTLLGMIELSLQPTTGLP---PPLLPLPPPIKR-FLALLGFPVHPYISNLLVDASVRRQGHAARLVAHAESVA-REDGFNLIFLHADGDYRPAVKLYETLGYK 201
            ME  DL  +V L          + EYG  + T   +Q++ WWL+  V   M   LA    P  KDH + +  +      S + TP                      ++GMIE+S QP   LP   PP +P+P  +K+ +  + G P+  +I NLL+D S RR+G A  LVA  E +A +  G   + LH D  Y  A +LY+++GY+
Sbjct:    1 MEPQDLTDIVDLC---------MDEYGKKNRTTLADQLDQWWLQLLVESTMRMKLALDASPLDKDHTILVATQ----NTSQQSTP---------------------RVIGMIEVSWQPV--LPDRIPPAVPIPLSLKKMYCQITGTPIEAWIGNLLIDPSFRRRGLAKLLVAATEGLASQRTGCTSLHLHCDAQYSAAQRLYQSMGYR 172          
BLAST of NO19G02120 vs. NCBI_GenBank
Match: GAX20542.1 (hypothetical protein FisN_3Hh608 [Fistulifera solaris])

HSP 1 Score: 82.0 bits (201), Expect = 2.600e-12
Identity = 68/244 (27.87%), Postives = 111/244 (45.49%), Query Frame = 0
Query:    1 MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWGMLARHMYPD---RKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGRENEDTTLLGMIELSLQPTTGLP---PPLLPLPPPIKR-FLALLGFPVHPYISNLLVDASVRRQGHAARLVAHAESV-AREDGFNLIFLHADGDYRPAVKLYETLGYK-GGEEXXXXXXXXRRGWVEKWV---GMKLRYFRKEL 233
            M+  DL  +V L          + EYG  + T F +Q++ WWL++ +   M  + +       KDH + +  +    + + R                         ++GMIE+S QP   LP   PP +P+P P+KR +  + G P+  +I NLL++ S RR+G A  LV+  E + A+  G   + LH D  Y  A +LY+++GY+   +E           W +      G+ L Y RK+L
Sbjct:    1 MDIQDLNDIVDLC---------MEEYGKKNRTNFADQLDQWWLQRLIDSTMRMKLVLDSSVLEKDHTILVATQHTCQQSTPR-------------------------VIGMIEVSWQPV--LPDRIPPAVPIPLPLKRMYCQVTGTPMEAWIGNLLIEPSFRRRGLAKVLVSATEGIAAQRTGCTSLHLHCDAQYSVAQRLYQSMGYRIVPKEDTPFTFDGGMAWKDSIYFVDGVALLYLRKDL 208          
The following BLAST results are available for this feature:
BLAST of NO19G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853791.11.500e-5554.31hypothetical protein NGA_2112100, partial [Nannoch... [more]
EWM23678.13.000e-1664.86hypothetical protein Naga_100030g3 [Nannochloropsi... [more]
CBN78537.11.100e-1537.20conserved unknown protein [Ectocarpus siliculosus][more]
GAX10388.15.300e-1331.73hypothetical protein FisN_3Lh608 [Fistulifera sola... [more]
GAX20542.12.600e-1227.87hypothetical protein FisN_3Hh608 [Fistulifera sola... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004550NSK004550Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02120.1NO19G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531518gene_7613Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g3gene6747Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02120.1NO19G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02120 ID=NO19G02120|Name=NO19G02120|organism=Nannochloropsis oceanica|type=gene|length=1241bp
ACACAAGCACAGGGCTTTGCAAAATATGCCACCACAATTACTGCCGCTAA
CATCACCACGGCGGCCAGAAAGACGAAGAGAGCAGCCACGGTGTCTCCTC
CTCCTCCTCCTCCTCCTGCTCTCCCTGACAGGGACGCTGTCGTTTGTGCG
CCCGCTCGCTTCTCCCTCCATCCTTCTTCCACGTCGCTCCTCCAGCGTCG
TCGTCCCTCGTCCCTCCACAACCACCGACCCTCCTTCTCCTCATTCTCCA
TCTTCTCCTCTTCCCGATGTCACCGACATCCGCAATGGTCCACTCCGCTT
CCTTTTACGCCCCAAGCCCTCCCCCCCCCCTTCCACTCTTCCACCTCTTT
CCGTATCCAGCGCATGGAAGCCTCCGACCTCCCGGCCGTCGTCCGTCTCG
CCGCACGCGAATTCGTGCCGTTGAATGAGCTACCCGAGTATGGAGGGATG
TCATCGACAGGATTTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCAGAA
TGTGTATTGGGGGATGTTGGCTCGCCATATGTACCCCGATAGGAAGGACC
ATCAGGTATTCTTGCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCGCGG
GATACTCCATATTACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGGACA
GGGGCGTGAGAATGAGGACACTACTCTTCTGGGCATGATTGAGCTCTCCC
TGCAACCCACTACTGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCCCCC
ATTAAACGCTTTCTCGCACTTCTCGGTTTTCCCGTCCATCCATATATCTC
CAACCTTTTGGTCGACGCGAGTGTCCGAAGGCAAGGACATGCGGCTCGTT
TGGTGGCTCATGCCGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTGATC
TTTTTGCACGCAGATGGTGACTACAGACCCGCAGTGAAGCTTTACGAAAC
CTTGGGCTATAAAGGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAGAGA
GAAGGGGATGGGTGGAAAAATGGGTGGGGATGAAGTTGAGGTATTTTCGG
AAGGAGCTCTGATAGGAAGAGGGAGGGAGGGAGAAAGGAGCGAATGCAGG
GAGTGGTCTTTTCCTCGCATGTACATAGAAGTAAATAGTGAAGAATTTCA
AGAGGGATGAGCGGCCACGTGAAAAACTTTTATGAAAGTAAGAAGGGATG
ACGCATTAGGCAAAGCAATGTAAAGTCAAAAGTAGTGGACA
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protein sequence of NO19G02120.1

>NO19G02120.1-protein ID=NO19G02120.1-protein|Name=NO19G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWG
MLARHMYPDRKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGREN
EDTTLLGMIELSLQPTTGLPPPLLPLPPPIKRFLALLGFPVHPYISNLLV
DASVRRQGHAARLVAHAESVAREDGFNLIFLHADGDYRPAVKLYETLGYK
GGEEEGEEGGEERRGWVEKWVGMKLRYFRKEL*
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Synonyms
Publications