NO19G02120.1, NO19G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02120.1
Unique NameNO19G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1241
Alignment locationchr19:608728..609968 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:608728..609968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02120.1 vs.
Match: XP_005853791.1 (hypothetical protein NGA_2112100, partial [Nannochloropsis gaditana CCMP526]; EKU22571.1 hypothetical protein NGA_2112100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 243.4 bits (620), Expect = 6.800e-61
Identity = 135/232 (58.19%), Postives = 159/232 (68.53%), Query Frame = 0 
Query:    1 MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWGMLARHMYPDRKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGRENEDTTLLGMIELSLQPTTGLPPPLLPLPPPIKRFLALLGFPVHPYISNLLVDASVRRQGHAARLVAHAESVAREDGFNLIFLHADGDYRPAVKLYETLGYKGGEEEGEEGGEERRGWVEKWVGMKLRYFRKEL 233
            M  SDL AVV LAAREF PLNEL EYGG  S G  E+ EAW LRQ V WGMLAR++YPD  DH+V LL+E + G         YR GK+  E    G E     LLGM+ELSLQPTTGLPPPL PL P +K   ALLG+P+ PYISNLLVD +VRRQGHAARL+A AE+ AR  G + ++LHAD DY PAV+LYE LGY+      + G    R WV++W G++LRY RKEL
Sbjct:    2 MSLSDLSAVVLLAAREFTPLNELAEYGGTPSGGLVEEFEAWGLRQKVRWGMLARYLYPD--DHEVLLLVEGEEG--------VYR-GKRGKEAREGGGEGGAAGLLGMVELSLQPTTGLPPPLFPLSPAVKGLFALLGWPLQPYISNLLVDVTVRRQGHAARLLAVAEAEARARGHSWVYLHADSDYLPAVRLYERLGYR------DVG--RGRAWVDRWTGLRLRYMRKEL 214
The following BLAST results are available for this feature:
BLAST of NO19G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853791.16.800e-6158.19hypothetical protein NGA_2112100, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02120NO19G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02120.1NO19G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02120.1.cds1NO19G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02120.1 ID=NO19G02120.1|Name=NO19G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp
ACACAAGCACAGGGCTTTGCAAAATATGCCACCACAATTACTGCCGCTAA
CATCACCACGGCGGCCAGAAAGACGAAGAGAGCAGCCACGGTGTCTCCTC
CTCCTCCTCCTCCTCCTGCTCTCCCTGACAGGGACGCTGTCGTTTGTGCG
CCCGCTCGCTTCTCCCTCCATCCTTCTTCCACGTCGCTCCTCCAGCGTCG
TCGTCCCTCGTCCCTCCACAACCACCGACCCTCCTTCTCCTCATTCTCCA
TCTTCTCCTCTTCCCGATGTCACCGACATCCGCAATGGTCCACTCCGCTT
CCTTTTACGCCCCAAGCCCTCCCCCCCCCCTTCCACTCTTCCACCTCTTT
CCGTATCCAGCGCATGGAAGCCTCCGACCTCCCGGCCGTCGTCCGTCTCG
CCGCACGCGAATTCGTGCCGTTGAATGAGCTACCCGAGTATGGAGGGATG
TCATCGACAGGATTTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCAGAA
TGTGTATTGGGGGATGTTGGCTCGCCATATGTACCCCGATAGGAAGGACC
ATCAGGTATTCTTGCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCGCGG
GATACTCCATATTACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGGACA
GGGGCGTGAGAATGAGGACACTACTCTTCTGGGCATGATTGAGCTCTCCC
TGCAACCCACTACTGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCCCCC
ATTAAACGCTTTCTCGCACTTCTCGGTTTTCCCGTCCATCCATATATCTC
CAACCTTTTGGTCGACGCGAGTGTCCGAAGGCAAGGACATGCGGCTCGTT
TGGTGGCTCATGCCGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTGATC
TTTTTGCACGCAGATGGTGACTACAGACCCGCAGTGAAGCTTTACGAAAC
CTTGGGCTATAAAGGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAGAGA
GAAGGGGATGGGTGGAAAAATGGGTGGGGATGAAGTTGAGGTATTTTCGG
AAGGAGCTCTGATAGGAAGAGGGAGGGAGGGAGAAAGGAGCGAATGCAGG
GAGTGGTCTTTTCCTCGCATGTACATAGAAGTAAATAGTGAAGAATTTCA
AGAGGGATGAGCGGCCACGTGAAAAACTTTTATGAAAGTAAGAAGGGATG
ACGCATTAGGCAAAGCAATGTAAAGTCAAAAGTAGTGGACA
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protein sequence of NO19G02120.1

>NO19G02120.1-protein ID=NO19G02120.1-protein|Name=NO19G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MEASDLPAVVRLAAREFVPLNELPEYGGMSSTGFGEQVEAWWLRQNVYWG
MLARHMYPDRKDHQVFLLLEEQGGRKSARDTPYYRKGKKMGEEEGQGREN
EDTTLLGMIELSLQPTTGLPPPLLPLPPPIKRFLALLGFPVHPYISNLLV
DASVRRQGHAARLVAHAESVAREDGFNLIFLHADGDYRPAVKLYETLGYK
GGEEEGEEGGEERRGWVEKWVGMKLRYFRKEL*
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mRNA from alignment at chr19:608728..609968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02120.1 ID=NO19G02120.1|Name=NO19G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at chr19:608728..609968- (Nannochloropsis oceanica)
ACACAAGCACAGGGCTTTGCAAAATATGCCACCACAATTACTGCCGCTAA
CATCACCACGGCGGCCAGAAAGACGAAGAGAGCAGCCACGGTGTCTCCTC
CTCCTCCTCCTCCTCCTGCTCTCCCTGACAGGGACGCTGTCGTTTGTGCG
CCCGCTCGCTTCTCCCTCCATCCTTCTTCCACGTCGCTCCTCCAGCGTCG
TCGTCCCTCGTCCCTCCACAACCACCGACCCTCCTTCTCCTCATTCTCCA
TCTTCTCCTCTTCCCGATGTCACCGACATCCGCAATGGTCCACTCCGCTT
CCTTTTACGCCCCAAGCCCTCCCCCCCCCCTTCCACTCTTCCACCTCTTT
CCGTATCCAGCGCATGGAAGCCTCCGACCTCCCGGCCGTCGTCCGTCTCG
CCGCACGCGAATTCGTGCCGTTGAATGAGCTACCCGAGTATGGAGGGATG
TCATCGACAGGATTTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCAGAA
TGTGTATTGGGGGATGTTGGCTCGCCATATGTACCCCGATAGGAAGGACC
ATCAGGTATTCTTGCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCGCGG
GATACTCCATATTACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGGACA
GGGGCGTGAGAATGAGGACACTACTCTTCTGGGCATGATTGAGCTCTCCC
TGCAACCCACTACTGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCCCCC
ATTAAACGCTTTCTCGCACTTCTCGGTTTTCCCGTCCATCCATATATCTC
CAACCTTTTGGTCGACGCGAGTGTCCGAAGGCAAGGACATGCGGCTCGTT
TGGTGGCTCATGCCGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTGATC
TTTTTGCACGCAGATGGTGACTACAGACCCGCAGTGAAGCTTTACGAAAC
CTTGGGCTATAAAGGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAGAGA
GAAGGGGATGGGTGGAAAAATGGGTGGGGATGAAGTTGAGGTATTTTCGG
AAGGAGCTCTGATAGGAAGAGGGAGGGAGGGAGAAAGGAGCGAATGCAGG
GAGTGGTCTTTTCCTCGCATGTACATAGAAGTAAATAGTGAAGAATTTCA
AGAGGGATGAGCGGCCACGTGAAAAACTTTTATGAAAGTAAGAAGGGATG
ACGCATTAGGCAAAGCAATGTAAAGTCAAAAGTAGTGGACA
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Coding sequence (CDS) from alignment at chr19:608728..609968-

>NO19G02120.1 ID=NO19G02120.1|Name=NO19G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr19:608728..609968- (Nannochloropsis oceanica)
ATGGAAGCCTCCGACCTCCCGGCCGTCGTCCGTCTCGCCGCACGCGAATT
CGTGCCGTTGAATGAGCTACCCGAGTATGGAGGGATGTCATCGACAGGAT
TTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCAGAATGTGTATTGGGGG
ATGTTGGCTCGCCATATGTACCCCGATAGGAAGGACCATCAGGTATTCTT
GCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCGCGGGATACTCCATATT
ACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGGACAGGGGCGTGAGAAT
GAGGACACTACTCTTCTGGGCATGATTGAGCTCTCCCTGCAACCCACTAC
TGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCCCCCATTAAACGCTTTC
TCGCACTTCTCGGTTTTCCCGTCCATCCATATATCTCCAACCTTTTGGTC
GACGCGAGTGTCCGAAGGCAAGGACATGCGGCTCGTTTGGTGGCTCATGC
CGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTGATCTTTTTGCACGCAG
ATGGTGACTACAGACCCGCAGTGAAGCTTTACGAAACCTTGGGCTATAAA
GGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAGAGAGAAGGGGATGGGT
GGAAAAATGGGTGGGGATGAAGTTGAGGTATTTTCGGAAGGAGCTCTGA
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Synonyms
Publications