NO19G02090, NO19G02090 (gene) Nannochloropsis oceanica

Overview
NameNO19G02090
Unique NameNO19G02090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1788
Alignment locationchr19:602626..604413 +

Link to JBrowse

Properties
Property NameValue
DescriptionEndonuclease/exonuclease/phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:602626..604413 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
Vocabulary: Biological Process
TermDefinition
GO:0090305nucleic acid phosphodiester bond hydrolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004527exonuclease activity
GO:0004519endonuclease activity
Homology
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: AIC56482.1 (TDP2, partial [synthetic construct])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0 
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:   82 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 356
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: AAF64144.1 (AD022 protein [Homo sapiens])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0 
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:   82 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 356
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: PNI24930.1 (TDP2 isoform 1 [Pan troglodytes])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0 
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:   82 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAVERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 356
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_007901371.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Callorhinchus milii])

HSP 1 Score: 123.2 bits (308), Expect = 1.500e-24
Identity = 87/301 (28.90%), Postives = 136/301 (45.18%), Query Frame = 0 
Query:   39 LRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQYKK-VVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            + + ++N+DGLD  NI +RA  VCS++       + PD++ LQE++   +     R  S  Y + P+   ++  Y+T      +R+++ +   TPF  ++M R+L+ V+  +A               E   MTSH ES    S ER RQL  ++  +      A  +F GDTNLR+ EV      K  + D W   G P   + TWD   N+NL+   A +  R+R DR+         GT                            E   + +Q +L+G  ++  GRFPSDH+GI C
Sbjct:   47 ISLLTWNIDGLDQKNIQERARAVCSLIAL-----YTPDIVFLQEVIPPYYNYLKKRAVS--YTIIPA---DEEGYYTAIMLKKSRVKLLKQEITPFLSTSMERNLLIVQVNIA-------------GNELCLMTSHLESTKDHSRERVRQLQTVMKKMQDAAETATVIFGGDTNLRDHEVTKLGGLKAGISDVWEYLGKPEYCQYTWDTQNNNNLE---ACYKCRLRFDRVFFR-----AGT----------------------------ETQIIPQQMELVGLDKLECGRFPSDHWGILC 288
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_004693378.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Condylura cristata])

HSP 1 Score: 121.7 bits (304), Expect = 4.400e-24
Identity = 89/303 (29.37%), Postives = 126/303 (41.58%), Query Frame = 0 
Query:   37 NFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            + L V ++N+DGLD  N+ +RA  VCS L       + PDVI LQE++   +     R  S   +        +  YFT      +R++       PF  + M R+L+ V              +S S  E   MTSH ES    + ER  Q   +L N+   P  A  +FAGDTNLR+ EV  C      ++D W   G P   + TWD  +N NL   G S   ++R DR+                                  A   +    + R   LLG  ++  GRFPSDH+G+ C
Sbjct:  112 SMLSVLTWNIDGLDLNNLQERARGVCSYLTL-----YSPDVIFLQEVIPPYYNYLKKRASSYEIIAG-----HEEGYFTAIMLKKSRVKFKSQEIIPFPNTEMMRNLLCVH-------------ASMSGNELCLMTSHLESTRGHAKERMNQFKMVLKNIQEVPESATVIFAGDTNLRDLEVTRCGGLPSNILDVWEFLGKPKHCQYTWDTEMNSNL---GISAKCKLRFDRIFFR-------------------------------AAAAENGYIIPRSLDLLGLEKLDCGRFPSDHWGLLC 357
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_014730627.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Sturnus vulgaris])

HSP 1 Score: 121.7 bits (304), Expect = 4.400e-24
Identity = 88/297 (29.63%), Postives = 133/297 (44.78%), Query Frame = 0 
Query:   43 SYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNL--LSFPGPALFAGDTNLREGEV-KACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            ++N+DGLD  N+ DRA  VC+ L       + PDV+ LQE++  + P+   ++ +  Y + P +I   + YFT      +R+++ +    PF  + M R+L+ V               S S  E   MTSH ES    S ER +QL  +L+ +  +S     +F GDTNLR+ EV K       + D W   G P   + TWD   NDNL    A++  +MR DR+                                     ++E   + R   L+G  ++  GRFPSDH+GI C
Sbjct:  127 TWNIDGLDLGNLKDRARGVCTYLAL-----YSPDVVFLQEVIPPHLPLL--QMKAGNYTIIPGNI---DGYFTAIMLKKSRVKLLKHEIIPFPTTTMKRNLLVVH-------------VSISGIELCLMTSHLESTKNHSKERIKQLQIVLNEMQKVSETTTVIFGGDTNLRDSEVTKLGNLPDNIKDVWEFLGKPQHCRYTWDTQSNDNL---NAAYKCKMRFDRVYFR--------------------------------PALEEGHFIPRSMDLIGLEKLECGRFPSDHWGILC 365
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_002816533.1 (tyrosyl-DNA phosphodiesterase 2 [Pongo abelii])

HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24
Identity = 100/340 (29.41%), Postives = 146/340 (42.94%), Query Frame = 0 
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRL--CSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++    P + S L   S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               S S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + +   LLG  ++  GRFPSDH+G+ C
Sbjct:  112 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVI----PPYYSYLKKSSSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VSVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIVPQSLDLLGLEKLDCGRFPSDHWGLLC 386
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_002714202.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Oryctolagus cuniculus])

HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24
Identity = 92/325 (28.31%), Postives = 144/325 (44.31%), Query Frame = 0 
Query:   15 SVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            S+++ +SP  N ++    + S       ++N+DGLD  ++ +RA  VCS +       + PDV+ LQE++   +  ++ +  S+  ++       +  YFT      +R+++      PF  + M R+L+ V              +S S  E   MTSH ES    +TER  QL  +L+ +   P  A  +FAGDTNLR+ EV  C      ++D W   G P   + TWD  +N NL   G S   ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:   80 SISSKTSPTENTQQEDGSMFS-----CITWNIDGLDLNHLQERARGVCSYIAL-----YSPDVVFLQEVIPP-YCSYIKKRASSYEIIT----GHEEGYFTAIMLKKSRVKLKSQEIIPFPNTKMMRNLLCVH-------------ASVSGNELYLMTSHLESTRGHATERMNQLKMVLEKIQEAPESATVIFAGDTNLRDQEVAKCGGLPSNILDVWEFLGKPKHCQYTWDTQMNSNL---GISATCKLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 341
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: PNJ15745.1 (TDP2 isoform 1 [Pongo abelii])

HSP 1 Score: 121.3 bits (303), Expect = 5.800e-24
Identity = 100/340 (29.41%), Postives = 146/340 (42.94%), Query Frame = 0 
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRL--CSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++    P + S L   S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               S S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + +   LLG  ++  GRFPSDH+G+ C
Sbjct:   82 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVI----PPYYSYLKKSSSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VSVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIVPQSLDLLGLEKLDCGRFPSDHWGLLC 356
[Close]
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_003263614.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Nomascus leucogenys])

HSP 1 Score: 120.9 bits (302), Expect = 7.600e-24
Identity = 96/338 (28.40%), Postives = 143/338 (42.31%), Query Frame = 0 
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S       ++N+DGLD  N+S+RA  VCS L       + PDV+ LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + +   LLG  ++  GRFPSDH+G+ C
Sbjct:  112 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----FITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVVFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDQEVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPQSLDLLGLEKLDCGRFPSDHWGLLC 386
The following BLAST results are available for this feature:
BLAST of NO19G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
AIC56482.11.200e-2428.99TDP2, partial [synthetic construct][more]
AAF64144.11.200e-2428.99AD022 protein [Homo sapiens][more]
PNI24930.11.200e-2428.99TDP2 isoform 1 [Pan troglodytes][more]
XP_007901371.11.500e-2428.90PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Callor... [more]
XP_004693378.14.400e-2429.37PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Condyl... [more]
XP_014730627.14.400e-2429.63PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Sturnu... [more]
XP_002816533.15.800e-2429.41tyrosyl-DNA phosphodiesterase 2 [Pongo abelii][more]
XP_002714202.15.800e-2428.31PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Orycto... [more]
PNJ15745.15.800e-2429.41TDP2 isoform 1 [Pongo abelii][more]
XP_003263614.17.600e-2428.40PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Nomasc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004547NSK004547Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02090.1NO19G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599347gene_7610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g6gene6750Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02090.1NO19G02090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02090 ID=NO19G02090|Name=NO19G02090|organism=Nannochloropsis oceanica|type=gene|length=1788bp
GTGAGGAGGCGGTCACAGTTCTTGGGTTTTATTTGTGAGAATGTGTGTTG
TGTTGAGGAGTATTAGTGAAGACTTGCTTGTGAGGAGGCGGTCACAGTTC
TTATGTTTTATTTGTGGATATGATGGGATGCGAGGATTGAGACGGTGGCT
TGGAGCAAGAGCAAAAAGACCTGCCGGTAAGCGGAATGGGTGAACTTGCT
GCCTTTACTTGCCAGGGGGAGTCGAGACCGCGGGAGGTTGTTGGCATGAT
GGAGCGCGATTTGTTTCTCAACATTCAGTTCCCCCGTCCAGCAAGTCAGT
GGCCGTATACGTATTCATCAGCTTTTGGGCCAAACAACACGATTTTTTGA
TGCACTCACGGAAAGAATGAACTCACCTCGCCTAACTCAGCCGGACGATC
AACAAGCAGCAACCCACTCGATCACGCCACAATGTCATAAACTCATCACT
CACAGGCTACACGTCGCCCTCCTTCTGGGAAAGCGACTTTTATTACCATT
CTTTCTTCCAACCTCGTCTTCTTTCCACCGGCGATCGTCGTGATTTCGAT
CCTCACGATCAGGACAGCTATCGCTGCCTTCCCTACCACGCACCGTCTCA
CGTCTCGCTTCCTCCGTCCGCCACGTAACATCATGAAACGATACGTCGGC
AGCAGCCATAGCAGCAGCATCAGCAGCGTAGCTAACCCCTCCTCGCCGGA
CAACAACATGAAGCGTGCGAAAGTCGGCCTCCTCTCCACGAATTTCTTGC
GCGTTTGTTCGTACAACGTGGATGGGCTCGATGACCTCAACATCTCGGAT
CGCGCAAACGAAGTGTGCTCCATCCTACTCCAAGAAGAACCGGACGGATT
CTTGCCTGATGTCATTTTGCTGCAGGAAATCGTGCAAGCAAATTTCCCGG
TCTTTGTCTCCCGCCTTTGCTCCGCCGGGTACGTCCTCGCCCCTTCGTCC
ATCCCCGAAGACAACGATTACTTTACCTTAGCCTTCTTCAACGGAGCTCG
CATTCAAATCACACGTTCGATGCGCACGCCCTTTTCCGGGTCGAATATGG
GGCGGGATTTGATAAAGGTGGAGGGACGGCTGGCACTTGGTGCTGCTGAC
GAAACCCCTTTCTCCTCCGCCTCTTCTCGTGAGTTTCTTTTCATGACTTC
CCACTTCGAGTCCTTGGGTCCTGGGTCCACGGAACGCTGCCGGCAGCTTA
CGCAAATCTTAGACAATCTCCTCTCCTTCCCTGGCCCTGCCCTTTTTGCC
GGCGACACCAACCTGAGAGAGGGGGAGGTGAAAGCCTGTGAGCAGTATAA
GAAAGTGGTGGACGCCTGGATGGCTGCTGGGAGTCCGGCCGCCGAAAAAG
TGACGTGGGATATGTCGATAAATGACAACTTGAAGATGGATGGTGCTTCT
TTCTTGCCTCGAATGAGGTTGGACAGGCTATTGCTCAATTGGAAGTGGGG
CGGGATAGGGACGACGACGGCTTCAACGACAGCAGCAGACTCGAATAAAG
GATGCGGAGGGGGAAAGGGCAAAAAGAAAGCGGCGGAGACGGTGAAGGAA
CGGACGGAATTAGTGAGGCAGTGGAAGTTGCTTGGGAAGGCGCGCATGGC
TGACGGTAGGTTCCCCTCGGATCACTTTGGGATTTCGTGCCTGGTACGCT
TGCCGGCATCTGGTGTATGACGAGGGTGAGTTCTATCCAGTCAGTCAGAA
AGAAAGTGAGCTGGCGAATAGTGAAAGTGTAGAAGCGAAAGAAATAGAAG
AGAAAAAAAGGAAGAAAAACAAGATGAGGAAGACAAAC
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protein sequence of NO19G02090.1

>NO19G02090.1-protein ID=NO19G02090.1-protein|Name=NO19G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MKRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLD
DLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGY
VLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRL
ALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFP
GPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNL
KMDGASFLPRMRLDRLLLNWKWGGIGTTTASTTAADSNKGCGGGKGKKKA
AETVKERTELVRQWKLLGKARMADGRFPSDHFGISCLVRLPASGV*
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Synonyms
Publications