NO19G02090.1, NO19G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02090.1
Unique NameNO19G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1788
Alignment locationchr19:602626..604413 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:602626..604413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02090.1 vs.
Match: EWM23687.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 335.5 bits (859), Expect = 2.000e-88
Identity = 189/361 (52.35%), Postives = 233/361 (64.54%), Query Frame = 0 
Query:    1 MKRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRL--------ALGAADETPFSSA------SSREFLFMTSHFESLGP--GSTERCRQLTQILDNLLSFPGPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGG-IGTTTASTTAADSNKGCGGGKGKKKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISCLVRLPASG 345
            MKRY+ +    +  + ++  SP    K+A+  L +T+FL VCSYNVDGLD   +  RA EVCSILL+E PD  LPDVILLQE+V+AN PVFVSRL +AGY +AP        YFTLAFF   RI IT ++R PF GS MGRDLIKV+GRL        A  AA   P S +      ++ + LFMT+H ESLG    S +R  QL  +L+ L++FPGP LFAGDTNLRE EV+A  +YK V+DAW+A GSP     TWDM++NDN KM+ A F PRMRLDRLLLN KWG  +G  T      + +KG GG + +K     VK        W+LLG+ RMA+G FPSDHFGISC VRLP  G
Sbjct:  118 MKRYLTTYPGKTAGASSSRDSPSPGRKKARPTLAATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWGDRVGGQT-----LEGSKGKGGARREKDGEGRVK-------GWRLLGRERMAEGVFPSDHFGISCCVRLPPQG 466
The following BLAST results are available for this feature:
BLAST of NO19G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23687.12.000e-8852.35Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02090NO19G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02090.1NO19G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02090.1.cds1NO19G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02090.1 ID=NO19G02090.1|Name=NO19G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp
GTGAGGAGGCGGTCACAGTTCTTGGGTTTTATTTGTGAGAATGTGTGTTG
TGTTGAGGAGTATTAGTGAAGACTTGCTTGTGAGGAGGCGGTCACAGTTC
TTATGTTTTATTTGTGGATATGATGGGATGCGAGGATTGAGACGGTGGCT
TGGAGCAAGAGCAAAAAGACCTGCCGGTAAGCGGAATGGGTGAACTTGCT
GCCTTTACTTGCCAGGGGGAGTCGAGACCGCGGGAGGTTGTTGGCATGAT
GGAGCGCGATTTGTTTCTCAACATTCAGTTCCCCCGTCCAGCAAGTCAGT
GGCCGTATACGTATTCATCAGCTTTTGGGCCAAACAACACGATTTTTTGA
TGCACTCACGGAAAGAATGAACTCACCTCGCCTAACTCAGCCGGACGATC
AACAAGCAGCAACCCACTCGATCACGCCACAATGTCATAAACTCATCACT
CACAGGCTACACGTCGCCCTCCTTCTGGGAAAGCGACTTTTATTACCATT
CTTTCTTCCAACCTCGTCTTCTTTCCACCGGCGATCGTCGTGATTTCGAT
CCTCACGATCAGGACAGCTATCGCTGCCTTCCCTACCACGCACCGTCTCA
CGTCTCGCTTCCTCCGTCCGCCACGTAACATCATGAAACGATACGTCGGC
AGCAGCCATAGCAGCAGCATCAGCAGCGTAGCTAACCCCTCCTCGCCGGA
CAACAACATGAAGCGTGCGAAAGTCGGCCTCCTCTCCACGAATTTCTTGC
GCGTTTGTTCGTACAACGTGGATGGGCTCGATGACCTCAACATCTCGGAT
CGCGCAAACGAAGTGTGCTCCATCCTACTCCAAGAAGAACCGGACGGATT
CTTGCCTGATGTCATTTTGCTGCAGGAAATCGTGCAAGCAAATTTCCCGG
TCTTTGTCTCCCGCCTTTGCTCCGCCGGGTACGTCCTCGCCCCTTCGTCC
ATCCCCGAAGACAACGATTACTTTACCTTAGCCTTCTTCAACGGAGCTCG
CATTCAAATCACACGTTCGATGCGCACGCCCTTTTCCGGGTCGAATATGG
GGCGGGATTTGATAAAGGTGGAGGGACGGCTGGCACTTGGTGCTGCTGAC
GAAACCCCTTTCTCCTCCGCCTCTTCTCGTGAGTTTCTTTTCATGACTTC
CCACTTCGAGTCCTTGGGTCCTGGGTCCACGGAACGCTGCCGGCAGCTTA
CGCAAATCTTAGACAATCTCCTCTCCTTCCCTGGCCCTGCCCTTTTTGCC
GGCGACACCAACCTGAGAGAGGGGGAGGTGAAAGCCTGTGAGCAGTATAA
GAAAGTGGTGGACGCCTGGATGGCTGCTGGGAGTCCGGCCGCCGAAAAAG
TGACGTGGGATATGTCGATAAATGACAACTTGAAGATGGATGGTGCTTCT
TTCTTGCCTCGAATGAGGTTGGACAGGCTATTGCTCAATTGGAAGTGGGG
CGGGATAGGGACGACGACGGCTTCAACGACAGCAGCAGACTCGAATAAAG
GATGCGGAGGGGGAAAGGGCAAAAAGAAAGCGGCGGAGACGGTGAAGGAA
CGGACGGAATTAGTGAGGCAGTGGAAGTTGCTTGGGAAGGCGCGCATGGC
TGACGGTAGGTTCCCCTCGGATCACTTTGGGATTTCGTGCCTGGTACGCT
TGCCGGCATCTGGTGTATGACGAGGGTGAGTTCTATCCAGTCAGTCAGAA
AGAAAGTGAGCTGGCGAATAGTGAAAGTGTAGAAGCGAAAGAAATAGAAG
AGAAAAAAAGGAAGAAAAACAAGATGAGGAAGACAAAC
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protein sequence of NO19G02090.1

>NO19G02090.1-protein ID=NO19G02090.1-protein|Name=NO19G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MKRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLD
DLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGY
VLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRL
ALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFP
GPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNL
KMDGASFLPRMRLDRLLLNWKWGGIGTTTASTTAADSNKGCGGGKGKKKA
AETVKERTELVRQWKLLGKARMADGRFPSDHFGISCLVRLPASGV*
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mRNA from alignment at chr19:602626..604413+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02090.1 ID=NO19G02090.1|Name=NO19G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at chr19:602626..604413+ (Nannochloropsis oceanica)
GTGAGGAGGCGGTCACAGTTCTTGGGTTTTATTTGTGAGAATGTGTGTTG
TGTTGAGGAGTATTAGTGAAGACTTGCTTGTGAGGAGGCGGTCACAGTTC
TTATGTTTTATTTGTGGATATGATGGGATGCGAGGATTGAGACGGTGGCT
TGGAGCAAGAGCAAAAAGACCTGCCGGTAAGCGGAATGGGTGAACTTGCT
GCCTTTACTTGCCAGGGGGAGTCGAGACCGCGGGAGGTTGTTGGCATGAT
GGAGCGCGATTTGTTTCTCAACATTCAGTTCCCCCGTCCAGCAAGTCAGT
GGCCGTATACGTATTCATCAGCTTTTGGGCCAAACAACACGATTTTTTGA
TGCACTCACGGAAAGAATGAACTCACCTCGCCTAACTCAGCCGGACGATC
AACAAGCAGCAACCCACTCGATCACGCCACAATGTCATAAACTCATCACT
CACAGGCTACACGTCGCCCTCCTTCTGGGAAAGCGACTTTTATTACCATT
CTTTCTTCCAACCTCGTCTTCTTTCCACCGGCGATCGTCGTGATTTCGAT
CCTCACGATCAGGACAGCTATCGCTGCCTTCCCTACCACGCACCGTCTCA
CGTCTCGCTTCCTCCGTCCGCCACGTAACATCATGAAACGATACGTCGGC
AGCAGCCATAGCAGCAGCATCAGCAGCGTAGCTAACCCCTCCTCGCCGGA
CAACAACATGAAGCGTGCGAAAGTCGGCCTCCTCTCCACGAATTTCTTGC
GCGTTTGTTCGTACAACGTGGATGGGCTCGATGACCTCAACATCTCGGAT
CGCGCAAACGAAGTGTGCTCCATCCTACTCCAAGAAGAACCGGACGGATT
CTTGCCTGATGTCATTTTGCTGCAGGAAATCGTGCAAGCAAATTTCCCGG
TCTTTGTCTCCCGCCTTTGCTCCGCCGGGTACGTCCTCGCCCCTTCGTCC
ATCCCCGAAGACAACGATTACTTTACCTTAGCCTTCTTCAACGGAGCTCG
CATTCAAATCACACGTTCGATGCGCACGCCCTTTTCCGGGTCGAATATGG
GGCGGGATTTGATAAAGGTGGAGGGACGGCTGGCACTTGGTGCTGCTGAC
GAAACCCCTTTCTCCTCCGCCTCTTCTCGTGAGTTTCTTTTCATGACTTC
CCACTTCGAGTCCTTGGGTCCTGGGTCCACGGAACGCTGCCGGCAGCTTA
CGCAAATCTTAGACAATCTCCTCTCCTTCCCTGGCCCTGCCCTTTTTGCC
GGCGACACCAACCTGAGAGAGGGGGAGGTGAAAGCCTGTGAGCAGTATAA
GAAAGTGGTGGACGCCTGGATGGCTGCTGGGAGTCCGGCCGCCGAAAAAG
TGACGTGGGATATGTCGATAAATGACAACTTGAAGATGGATGGTGCTTCT
TTCTTGCCTCGAATGAGGTTGGACAGGCTATTGCTCAATTGGAAGTGGGG
CGGGATAGGGACGACGACGGCTTCAACGACAGCAGCAGACTCGAATAAAG
GATGCGGAGGGGGAAAGGGCAAAAAGAAAGCGGCGGAGACGGTGAAGGAA
CGGACGGAATTAGTGAGGCAGTGGAAGTTGCTTGGGAAGGCGCGCATGGC
TGACGGTAGGTTCCCCTCGGATCACTTTGGGATTTCGTGCCTGGTACGCT
TGCCGGCATCTGGTGTATGACGAGGGTGAGTTCTATCCAGTCAGTCAGAA
AGAAAGTGAGCTGGCGAATAGTGAAAGTGTAGAAGCGAAAGAAATAGAAG
AGAAAAAAAGGAAGAAAAACAAGATGAGGAAGACAAAC
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Coding sequence (CDS) from alignment at chr19:602626..604413+

>NO19G02090.1 ID=NO19G02090.1|Name=NO19G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr19:602626..604413+ (Nannochloropsis oceanica)
ATGAAACGATACGTCGGCAGCAGCCATAGCAGCAGCATCAGCAGCGTAGC
TAACCCCTCCTCGCCGGACAACAACATGAAGCGTGCGAAAGTCGGCCTCC
TCTCCACGAATTTCTTGCGCGTTTGTTCGTACAACGTGGATGGGCTCGAT
GACCTCAACATCTCGGATCGCGCAAACGAAGTGTGCTCCATCCTACTCCA
AGAAGAACCGGACGGATTCTTGCCTGATGTCATTTTGCTGCAGGAAATCG
TGCAAGCAAATTTCCCGGTCTTTGTCTCCCGCCTTTGCTCCGCCGGGTAC
GTCCTCGCCCCTTCGTCCATCCCCGAAGACAACGATTACTTTACCTTAGC
CTTCTTCAACGGAGCTCGCATTCAAATCACACGTTCGATGCGCACGCCCT
TTTCCGGGTCGAATATGGGGCGGGATTTGATAAAGGTGGAGGGACGGCTG
GCACTTGGTGCTGCTGACGAAACCCCTTTCTCCTCCGCCTCTTCTCGTGA
GTTTCTTTTCATGACTTCCCACTTCGAGTCCTTGGGTCCTGGGTCCACGG
AACGCTGCCGGCAGCTTACGCAAATCTTAGACAATCTCCTCTCCTTCCCT
GGCCCTGCCCTTTTTGCCGGCGACACCAACCTGAGAGAGGGGGAGGTGAA
AGCCTGTGAGCAGTATAAGAAAGTGGTGGACGCCTGGATGGCTGCTGGGA
GTCCGGCCGCCGAAAAAGTGACGTGGGATATGTCGATAAATGACAACTTG
AAGATGGATGGTGCTTCTTTCTTGCCTCGAATGAGGTTGGACAGGCTATT
GCTCAATTGGAAGTGGGGCGGGATAGGGACGACGACGGCTTCAACGACAG
CAGCAGACTCGAATAAAGGATGCGGAGGGGGAAAGGGCAAAAAGAAAGCG
GCGGAGACGGTGAAGGAACGGACGGAATTAGTGAGGCAGTGGAAGTTGCT
TGGGAAGGCGCGCATGGCTGACGGTAGGTTCCCCTCGGATCACTTTGGGA
TTTCGTGCCTGGTACGCTTGCCGGCATCTGGTGTATGA
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Synonyms
Publications