NO19G02090, NO19G02090 (gene) Nannochloropsis oceanica

Overview
NameNO19G02090
Unique NameNO19G02090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1788
Alignment locationchr19:602626..604413 +

Link to JBrowse

Properties
Property NameValue
DescriptionEndonuclease/exonuclease/phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:602626..604413 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
Vocabulary: Biological Process
TermDefinition
GO:0090305nucleic acid phosphodiester bond hydrolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004527exonuclease activity
GO:0004519endonuclease activity
Homology
BLAST of NO19G02090 vs. NCBI_GenBank
Match: EWM23687.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 329.3 bits (843), Expect = 1.400e-86
Identity = 183/360 (50.83%), Postives = 224/360 (62.22%), Query Frame = 0
Query:    1 MKRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRL--------ALGAADETPFSSA------SSREFLFMTSHFESLGP--GSTERCRQLTQILDNLLSFPGPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISCLVRLPASG 345
            MKRY+ +    +  + ++  SP    K+A+  L +T+FL VCSYNVDGLD   +  RA EVCSILL+E PD  LPDVILLQE+V+AN PVFVSRL +AGY +AP        YFTLAFF   RI IT ++R PF GS MGRDLIKV+GRL        A  AA   P S +      ++ + LFMT+H ESLG    S +R  QL  +L+ L++FPGP LFAGDTNLRE EV+A  +YK V+DAW+A GSP     TWDM++NDN KM+ A F PRMRLDRLLLN KWG                           A   K+    V+ W+LLG+ RMA+G FPSDHFGISC VRLP  G
Sbjct:  118 MKRYLTTYPGKTAGASSSRDSPSPGRKKARPTLAATDFLHVCSYNVDGLDSNLLLQRAGEVCSILLEETPDRPLPDVILLQEVVEANLPVFVSRLTAAGYEVAPPPSESLPPYFTLAFFKTCRIHITSAVRMPFPGSRMGRDLIKVQGRLNEPGAGTHAPSAASLNPPSGSGPPALPATVDLLFMTAHLESLGDPLSSEQRSHQLGHVLETLIAFPGPGLFAGDTNLREKEVRAEGRYKLVIDAWVADGSPKTANATWDMTVNDNKKMETAGFKPRMRLDRLLLNGKWG-----------DRVGGQTLEGSKGKGGARREKDGEGRVKGWRLLGRERMAEGVFPSDHFGISCCVRLPPQG 466          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: CBJ28153.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.1 bits (362), Expect = 8.400e-31
Identity = 89/211 (42.18%), Postives = 111/211 (52.61%), Query Frame = 0
Query:   57 RANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAG-YVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSF-PGPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDR 266
            R  EVC+ILL+ EP    PDVILLQE+    F V  +RL   G Y   P  +P +  YFTL F     + +  S R  F  S MGRDL  V              ++ + +  L MTSH ES    S ER  Q  Q++  LL+F  GPA+FAGDTNLRE EVK  +  K+  D W   G+    + TWDM+ NDNL + G  F PR R DR
Sbjct:    3 RVEEVCAILLESEP---TPDVILLQEVDDEMFAVLNARLGGGGRYRAFPPRVPVEQRYFTLTFVKVGTVTVEESGRKDFPHSLMGRDLSTVR-------------ATFNGKPMLLMTSHLESEKQSSEERKAQFNQVMKQLLAFRGGPAIFAGDTNLREAEVKQEKLAKEAGDMWQLCGADPERRFTWDMANNDNL-VFGGGFQPRARYDR 196          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_011672633.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Strongylocentrotus purpuratus])

HSP 1 Score: 134.8 bits (338), Expect = 5.100e-28
Identity = 99/308 (32.14%), Postives = 140/308 (45.45%), Query Frame = 0
Query:   35 STNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFF-NGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNL-LSFPGPAL-FAGDTNLREGEVKACEQYKK-VVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTEL-VRQWKLLGKARMAD-GRFPSDHFGISC 337
            +TN  R+ S+N+DGLD+ N  +R    C  +++       PDV+ LQE+V     +  +RL S   + A +SI     Y+T     N +   IT S+  PFS + MGR+L      L + A  +  + S        M +H ES GP + ER  Q  Q L  + +  P   + F GDTNLR+ EV +     + +VD W A G+    K TWD + NDNL     SF P++R DRL      G                                  T L +  +KL+GK R+    RFPSDH+GI C
Sbjct:   11 NTNIFRLMSWNIDGLDERNAEERTGAACDTIMK-----LAPDVVFLQEVVPTTHTLLKARLSSKYTIHAANSI----GYYTCTLVKNSSESCITTSLVQPFSNTKMGRNL------LIVNACYKNIYLS-------LMNTHLESTGPATAERLLQFQQALGEMQIQDPDRVVFFGGDTNLRDKEVASMRGLPQGIVDQWEACGADKKTKFTWDTTTNDNLDWQSGSFKPKLRFDRLFQRPAAG--------------------------------HATNLSISSFKLIGKERLPGCQRFPSDHYGIVC 264          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_002732161.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2-like [Saccoglossus kowalevskii])

HSP 1 Score: 130.2 bits (326), Expect = 1.300e-26
Identity = 101/344 (29.36%), Postives = 150/344 (43.60%), Query Frame = 0
Query:    8 SHSSSISSVANPSSP------------DNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPG--PALFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            SHS S S  +  SSP            D+N+      L+    L++ ++N+DGLD+ NI++R   VCSI+ +E      PDV+ LQE++   F  ++  +CS  Y+  P++      YFT      +RI +       F  + M R+L+ V+ R                 + L MTSH ES+   S ER  QLT +L ++         +F GDTNLR+ E+         + D W   GSP   + +WD++ NDNL M    F P+ R DRL L     G  +                                L + +  +G  R+  GRF SDH+GI C
Sbjct:   64 SHSMSPSGSSGNSSPDLVVTYDSGAPADSNLGNQTCSLM----LKLLTWNIDGLDNKNITERTKTVCSIIKRES-----PDVVYLQEVIVETF-AYIETMCSPTYIAIPAN---SEQYFTTILLRKSRISLLAHKIIEFPTTKMYRNLLTVKARF-------------RDIDLLLMTSHMESMKNHSHERKTQLTTVLKHMSEADAATAVIFGGDTNLRDYEITQIGGLPDSIGDVWQMCGSPEDAQFSWDITKNDNLDM---PFKPKCRFDRLFLR---QGCSSKL------------------------------LPQMFMFVGTERLPCGRFASDHWGILC 345          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_004043391.1 (PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Gorilla gorilla gorilla])

HSP 1 Score: 124.4 bits (311), Expect = 6.900e-25
Identity = 98/338 (28.99%), Postives = 145/338 (42.90%), Query Frame = 0
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R  +LLG  ++  GRFPSDH+G+ C
Sbjct:  112 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLELLGLEKLDCGRFPSDHWGLLC 386          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: EAW55458.1 (TRAF and TNF receptor associated protein, isoform CRA_a [Homo sapiens])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:  112 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 386          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: XP_518271.3 (tyrosyl-DNA phosphodiesterase 2 [Pan troglodytes] >XP_003823247.1 PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Pan paniscus])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:  112 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAVERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 386          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: BAA92119.1 (unnamed protein product [Homo sapiens])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:   82 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 356          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: NP_057698.2 (tyrosyl-DNA phosphodiesterase 2 [Homo sapiens] >O95551.1 RecName: Full=Tyrosyl-DNA phosphodiesterase 2; Short=Tyr-DNA phosphodiesterase 2; Short=hTDP2; AltName: Full=5'-tyrosyl-DNA phosphodiesterase; Short=5'-Tyr-DNA phosphodiesterase; AltName: Full=ETS1-associated protein 2; AltName: Full=ETS1-associated protein II; Short=EAPII; AltName: Full=TRAF and TNF receptor-associated protein; AltName: Full=Tyrosyl-RNA phosphodiesterase; AltName: Full=VPg unlinkase >AAG35600.1 ETS1-associated protein 2 [Homo sapiens] >CAB92966.1 TRAF and TNF receptor associated protein [Homo sapiens] >AAH17553.1 TRAF and TNF receptor associated protein [Homo sapiens] >AAT09764.1 TRAF and TNF receptor associated protein [Homo sapiens] >AAI10376.1 TRAF and TNF receptor associated protein [Homo sapiens] >ABZ92143.1 TRAF and TNF receptor associated protein, partial [synthetic construct] >BAJ17780.1 TRAF and TNF receptor associated protein, partial [synthetic construct])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:   82 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 356          
BLAST of NO19G02090 vs. NCBI_GenBank
Match: BAG60857.1 (unnamed protein product [Homo sapiens])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 98/338 (28.99%), Postives = 144/338 (42.60%), Query Frame = 0
Query:    2 KRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLDDLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGYVLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRLALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFPGPA--LFAGDTNLREGEVKACEQY-KKVVDAWMAAGSPAAEKVTWDMSINDNLKMDGASFLPRMRLDRLLLNWKWGGIGTTXXXXXXXXXXXXXXXXXXXXKAAETVKERTELVRQWKLLGKARMADGRFPSDHFGISC 337
            K YV  ++  +  S  +  SP  + ++    + S     + ++N+DGLD  N+S+RA  VCS L       + PDVI LQE++   +     R  S+ Y +       +  YFT      +R+++      PF  + M R+L+ V               + S  E   MTSH ES    + ER  QL  +L  +   P  A  +FAGDTNLR+ EV  C      +VD W   G P   + TWD  +N NL +  A    ++R DR+                                 AAE   E   + R   LLG  ++  GRFPSDH+G+ C
Sbjct:  112 KTYVDLTNEETTDSTTSKISPSEDTQQENGSMFS-----LITWNIDGLDLNNLSERARGVCSYLAL-----YSPDVIFLQEVIPPYYSYLKKR--SSNYEIITG---HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVH-------------VNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAAC---KLRFDRIFFR-----------------------------AAAE---EGHIIPRSLDLLGLEKLDCGRFPSDHWGLLC 386          
The following BLAST results are available for this feature:
BLAST of NO19G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23687.11.400e-8650.83Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
CBJ28153.18.400e-3142.18conserved unknown protein [Ectocarpus siliculosus][more]
XP_011672633.15.100e-2832.14PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Strong... [more]
XP_002732161.11.300e-2629.36PREDICTED: tyrosyl-DNA phosphodiesterase 2-like [S... [more]
XP_004043391.16.900e-2528.99PREDICTED: tyrosyl-DNA phosphodiesterase 2 [Gorill... [more]
EAW55458.11.200e-2428.99TRAF and TNF receptor associated protein, isoform ... [more]
XP_518271.31.200e-2428.99tyrosyl-DNA phosphodiesterase 2 [Pan troglodytes] ... [more]
BAA92119.11.200e-2428.99unnamed protein product [Homo sapiens][more]
NP_057698.21.200e-2428.99tyrosyl-DNA phosphodiesterase 2 [Homo sapiens] >O9... [more]
BAG60857.11.200e-2428.99unnamed protein product [Homo sapiens][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004547NSK004547Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02090.1NO19G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599347gene_7610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g6gene6750Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02090.1NO19G02090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02090 ID=NO19G02090|Name=NO19G02090|organism=Nannochloropsis oceanica|type=gene|length=1788bp
GTGAGGAGGCGGTCACAGTTCTTGGGTTTTATTTGTGAGAATGTGTGTTG
TGTTGAGGAGTATTAGTGAAGACTTGCTTGTGAGGAGGCGGTCACAGTTC
TTATGTTTTATTTGTGGATATGATGGGATGCGAGGATTGAGACGGTGGCT
TGGAGCAAGAGCAAAAAGACCTGCCGGTAAGCGGAATGGGTGAACTTGCT
GCCTTTACTTGCCAGGGGGAGTCGAGACCGCGGGAGGTTGTTGGCATGAT
GGAGCGCGATTTGTTTCTCAACATTCAGTTCCCCCGTCCAGCAAGTCAGT
GGCCGTATACGTATTCATCAGCTTTTGGGCCAAACAACACGATTTTTTGA
TGCACTCACGGAAAGAATGAACTCACCTCGCCTAACTCAGCCGGACGATC
AACAAGCAGCAACCCACTCGATCACGCCACAATGTCATAAACTCATCACT
CACAGGCTACACGTCGCCCTCCTTCTGGGAAAGCGACTTTTATTACCATT
CTTTCTTCCAACCTCGTCTTCTTTCCACCGGCGATCGTCGTGATTTCGAT
CCTCACGATCAGGACAGCTATCGCTGCCTTCCCTACCACGCACCGTCTCA
CGTCTCGCTTCCTCCGTCCGCCACGTAACATCATGAAACGATACGTCGGC
AGCAGCCATAGCAGCAGCATCAGCAGCGTAGCTAACCCCTCCTCGCCGGA
CAACAACATGAAGCGTGCGAAAGTCGGCCTCCTCTCCACGAATTTCTTGC
GCGTTTGTTCGTACAACGTGGATGGGCTCGATGACCTCAACATCTCGGAT
CGCGCAAACGAAGTGTGCTCCATCCTACTCCAAGAAGAACCGGACGGATT
CTTGCCTGATGTCATTTTGCTGCAGGAAATCGTGCAAGCAAATTTCCCGG
TCTTTGTCTCCCGCCTTTGCTCCGCCGGGTACGTCCTCGCCCCTTCGTCC
ATCCCCGAAGACAACGATTACTTTACCTTAGCCTTCTTCAACGGAGCTCG
CATTCAAATCACACGTTCGATGCGCACGCCCTTTTCCGGGTCGAATATGG
GGCGGGATTTGATAAAGGTGGAGGGACGGCTGGCACTTGGTGCTGCTGAC
GAAACCCCTTTCTCCTCCGCCTCTTCTCGTGAGTTTCTTTTCATGACTTC
CCACTTCGAGTCCTTGGGTCCTGGGTCCACGGAACGCTGCCGGCAGCTTA
CGCAAATCTTAGACAATCTCCTCTCCTTCCCTGGCCCTGCCCTTTTTGCC
GGCGACACCAACCTGAGAGAGGGGGAGGTGAAAGCCTGTGAGCAGTATAA
GAAAGTGGTGGACGCCTGGATGGCTGCTGGGAGTCCGGCCGCCGAAAAAG
TGACGTGGGATATGTCGATAAATGACAACTTGAAGATGGATGGTGCTTCT
TTCTTGCCTCGAATGAGGTTGGACAGGCTATTGCTCAATTGGAAGTGGGG
CGGGATAGGGACGACGACGGCTTCAACGACAGCAGCAGACTCGAATAAAG
GATGCGGAGGGGGAAAGGGCAAAAAGAAAGCGGCGGAGACGGTGAAGGAA
CGGACGGAATTAGTGAGGCAGTGGAAGTTGCTTGGGAAGGCGCGCATGGC
TGACGGTAGGTTCCCCTCGGATCACTTTGGGATTTCGTGCCTGGTACGCT
TGCCGGCATCTGGTGTATGACGAGGGTGAGTTCTATCCAGTCAGTCAGAA
AGAAAGTGAGCTGGCGAATAGTGAAAGTGTAGAAGCGAAAGAAATAGAAG
AGAAAAAAAGGAAGAAAAACAAGATGAGGAAGACAAAC
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protein sequence of NO19G02090.1

>NO19G02090.1-protein ID=NO19G02090.1-protein|Name=NO19G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MKRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLD
DLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGY
VLAPSSIPEDNDYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRL
ALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFP
GPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNL
KMDGASFLPRMRLDRLLLNWKWGGIGTTTASTTAADSNKGCGGGKGKKKA
AETVKERTELVRQWKLLGKARMADGRFPSDHFGISCLVRLPASGV*
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Synonyms
Publications