NO19G02080, NO19G02080 (gene) Nannochloropsis oceanica

Overview
NameNO19G02080
Unique NameNO19G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length948
Alignment locationchr19:601491..602438 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:601491..602438 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027267AH/BAR-dom
Homology
[Close]
BLAST of NO19G02080 vs. NCBI_GenBank
Match: EWM23686.1 (ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 7.600e-39
Identity = 103/232 (44.40%), Postives = 145/232 (62.50%), Query Frame = 0 
Query:   53 LMLHIDKDFNLLWNQCCHHETSTTQLQQKIKGILLLFREAAQSLCAISESFGGGLDSS-TGGVSVDACDYINATTLIATESFNDFEHELREHVLSTMGYTANENRRTEEKMKARLDLLKQHDAAFRAMVCARRATTTTTAAIDTPSHPLHAQ-------MHQREPQAVTVGTPRAEFFALQDQIKIEIGSLLRDRVNLFQKMLAKLSQIQLRLFVKMYSVLSKSLGYDVEVP 277
            ++ +ID++FNLL  Q   +E S TQL +KI+  +  FR AAQSLCAISE+FG G  ++  GG+S +ACDY+NATT+IA ++ +DFE  LR+H++ST    A EN+R E K++ARLDLL+ HD AFRA+  AR   T TT A +  ++P   +             Q   V   R +F    + IK ++ +LL  R  L+ ++LA+LS IQLRL  +MY+ L  S GY  EVP
Sbjct:   41 MLQNIDEEFNLLLRQNRQYEVSITQLHEKIEESIDRFRTAAQSLCAISEAFGSGWGATGGGGLSFEACDYMNATTIIAGDAISDFEIALRKHIISTKDCIAQENKRIEMKLRARLDLLRAHDIAFRALARARAICTGTTMASNGVANPSSFEERTTGLSSRPENDQDSRVARLRTDFLRGHELIKGDLRALLAGRAALYHEILAELSDIQLRLLGRMYNALGTSAGYRAEVP 272
The following BLAST results are available for this feature:
BLAST of NO19G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23686.17.600e-3944.40ankyrin repeat-containing protein [Nannochloropsis... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02080.1NO19G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599345gene_7609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02080.1NO19G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02080 ID=NO19G02080|Name=NO19G02080|organism=Nannochloropsis oceanica|type=gene|length=948bp
ATGTTTGCGAGTTTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCG
GGCAAACAGCGACAATGGAGATGGAGGCGGTGGATCCAGCACCAACACAC
CAATCATCGCTGCGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGAC
GTGCAGTTGATGCTACACATTGACAAGGACTTCAACCTCCTTTGGAATCA
GTGCTGCCATCATGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGG
GAATTCTGCTACTTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCG
GAGAGCTTTGGAGGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGA
CGCCTGCGATTACATCAACGCAACCACACTAATTGCAACCGAATCTTTCA
ATGATTTTGAGCATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTAC
ACTGCGAACGAGAACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGA
CCTGCTAAAGCAACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGA
GAGCCACCACTACCACCACCGCCGCCATCGATACTCCATCACATCCACTA
CACGCACAAATGCACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCC
TAGGGCTGAGTTCTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCT
CCCTCCTCCGTGACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTA
TCCCAAATCCAATTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAA
GTCGTTGGGTTACGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAG
AGGGGGTCTTCACCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAG
AAGGAGGAGGAGTATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGA
back to top

protein sequence of NO19G02080.1

>NO19G02080.1-protein ID=NO19G02080.1-protein|Name=NO19G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MFASFHRGDKKSTEAGRANSDNGDGGGGSSTNTPIIAARSSSFSASSPSD
VQLMLHIDKDFNLLWNQCCHHETSTTQLQQKIKGILLLFREAAQSLCAIS
ESFGGGLDSSTGGVSVDACDYINATTLIATESFNDFEHELREHVLSTMGY
TANENRRTEEKMKARLDLLKQHDAAFRAMVCARRATTTTTAAIDTPSHPL
HAQMHQREPQAVTVGTPRAEFFALQDQIKIEIGSLLRDRVNLFQKMLAKL
SQIQLRLFVKMYSVLSKSLGYDVEVPPPPAVSEEGVFTSKEEGLRKGEEK
KEEEYQEKGDRRSGG*
back to top
Synonyms
Publications