NO19G02080.1, NO19G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02080.1
Unique NameNO19G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length948
Alignment locationchr19:601491..602438 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:601491..602438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G02080.1 vs.
Match: EWM23686.1 (ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 175.3 bits (443), Expect = 3.100e-40
Identity = 114/261 (43.68%), Postives = 159/261 (60.92%), Query Frame = 0 
Query:   25 GGGGSSTNTPIIAARSSSFSASSPSDVQLML-HIDKDFNLLWNQCCHHETSTTQLQQKIKGILLLFREAAQSLCAISESFGGGLDSST-GGVSVDACDYINATTLIATESFNDFEHELREHVLSTMGYTANENRRTEEKMKARLDLLKQHDAAFRAMVCARRATTTTTAAIDTPSHPLHAQ-------MHQREPQAVTVGTPRAEFFALQDQIKIEIGSLLRDRVNLFQKMLAKLSQIQLRLFVKMYSVLSKSLGYDVEVP 277
            GG G+  +   +  + SSF+ SS  D   ML +ID++FNLL  Q   +E S TQL +KI+  +  FR AAQSLCAISE+FG G  ++  GG+S +ACDY+NATT+IA ++ +DFE  LR+H++ST    A EN+R E K++ARLDLL+ HD AFRA+  AR   T TT A +  ++P   +             Q   V   R +F    + IK ++ +LL  R  L+ ++LA+LS IQLRL  +MY+ L  S GY  EVP
Sbjct:   13 GGSGNKLSNDALT-KGSSFAPSSNLDAGYMLQNIDEEFNLLLRQNRQYEVSITQLHEKIEESIDRFRTAAQSLCAISEAFGSGWGATGGGGLSFEACDYMNATTIIAGDAISDFEIALRKHIISTKDCIAQENKRIEMKLRARLDLLRAHDIAFRALARARAICTGTTMASNGVANPSSFEERTTGLSSRPENDQDSRVARLRTDFLRGHELIKGDLRALLAGRAALYHEILAELSDIQLRLLGRMYNALGTSAGYRAEVP 272
The following BLAST results are available for this feature:
BLAST of NO19G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23686.13.100e-4043.68ankyrin repeat-containing protein [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02080NO19G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02080.1NO19G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02080.1.cds1NO19G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02080.1 ID=NO19G02080.1|Name=NO19G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
ATGTTTGCGAGTTTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCG
GGCAAACAGCGACAATGGAGATGGAGGCGGTGGATCCAGCACCAACACAC
CAATCATCGCTGCGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGAC
GTGCAGTTGATGCTACACATTGACAAGGACTTCAACCTCCTTTGGAATCA
GTGCTGCCATCATGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGG
GAATTCTGCTACTTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCG
GAGAGCTTTGGAGGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGA
CGCCTGCGATTACATCAACGCAACCACACTAATTGCAACCGAATCTTTCA
ATGATTTTGAGCATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTAC
ACTGCGAACGAGAACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGA
CCTGCTAAAGCAACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGA
GAGCCACCACTACCACCACCGCCGCCATCGATACTCCATCACATCCACTA
CACGCACAAATGCACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCC
TAGGGCTGAGTTCTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCT
CCCTCCTCCGTGACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTA
TCCCAAATCCAATTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAA
GTCGTTGGGTTACGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAG
AGGGGGTCTTCACCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAG
AAGGAGGAGGAGTATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGA
back to top

protein sequence of NO19G02080.1

>NO19G02080.1-protein ID=NO19G02080.1-protein|Name=NO19G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MFASFHRGDKKSTEAGRANSDNGDGGGGSSTNTPIIAARSSSFSASSPSD
VQLMLHIDKDFNLLWNQCCHHETSTTQLQQKIKGILLLFREAAQSLCAIS
ESFGGGLDSSTGGVSVDACDYINATTLIATESFNDFEHELREHVLSTMGY
TANENRRTEEKMKARLDLLKQHDAAFRAMVCARRATTTTTAAIDTPSHPL
HAQMHQREPQAVTVGTPRAEFFALQDQIKIEIGSLLRDRVNLFQKMLAKL
SQIQLRLFVKMYSVLSKSLGYDVEVPPPPAVSEEGVFTSKEEGLRKGEEK
KEEEYQEKGDRRSGG*
back to top

mRNA from alignment at chr19:601491..602438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02080.1 ID=NO19G02080.1|Name=NO19G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at chr19:601491..602438- (Nannochloropsis oceanica)
ATGTTTGCGAGTTTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCG
GGCAAACAGCGACAATGGAGATGGAGGCGGTGGATCCAGCACCAACACAC
CAATCATCGCTGCGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGAC
GTGCAGTTGATGCTACACATTGACAAGGACTTCAACCTCCTTTGGAATCA
GTGCTGCCATCATGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGG
GAATTCTGCTACTTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCG
GAGAGCTTTGGAGGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGA
CGCCTGCGATTACATCAACGCAACCACACTAATTGCAACCGAATCTTTCA
ATGATTTTGAGCATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTAC
ACTGCGAACGAGAACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGA
CCTGCTAAAGCAACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGA
GAGCCACCACTACCACCACCGCCGCCATCGATACTCCATCACATCCACTA
CACGCACAAATGCACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCC
TAGGGCTGAGTTCTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCT
CCCTCCTCCGTGACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTA
TCCCAAATCCAATTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAA
GTCGTTGGGTTACGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAG
AGGGGGTCTTCACCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAG
AAGGAGGAGGAGTATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGA
back to top

Coding sequence (CDS) from alignment at chr19:601491..602438-

>NO19G02080.1 ID=NO19G02080.1|Name=NO19G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr19:601491..602438- (Nannochloropsis oceanica)
ATGTTTGCGAGTTTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCG
GGCAAACAGCGACAATGGAGATGGAGGCGGTGGATCCAGCACCAACACAC
CAATCATCGCTGCGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGAC
GTGCAGTTGATGCTACACATTGACAAGGACTTCAACCTCCTTTGGAATCA
GTGCTGCCATCATGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGG
GAATTCTGCTACTTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCG
GAGAGCTTTGGAGGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGA
CGCCTGCGATTACATCAACGCAACCACACTAATTGCAACCGAATCTTTCA
ATGATTTTGAGCATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTAC
ACTGCGAACGAGAACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGA
CCTGCTAAAGCAACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGA
GAGCCACCACTACCACCACCGCCGCCATCGATACTCCATCACATCCACTA
CACGCACAAATGCACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCC
TAGGGCTGAGTTCTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCT
CCCTCCTCCGTGACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTA
TCCCAAATCCAATTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAA
GTCGTTGGGTTACGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAG
AGGGGGTCTTCACCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAG
AAGGAGGAGGAGTATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGA
back to top
Synonyms
Publications