NO19G02070, NO19G02070 (gene) Nannochloropsis oceanica

Overview
NameNO19G02070
Unique NameNO19G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2803
Alignment locationchr19:598613..601415 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:598613..601415 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02070.1NO19G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|161482gene_7608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02070.1NO19G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02070 ID=NO19G02070|Name=NO19G02070|organism=Nannochloropsis oceanica|type=gene|length=2803bp
ATGCATGTAGGGGGAAGCGTCGCTGCAGGTAGTGCCGTCTGTGCTGAAGC
CGTGGCGTTGTGCGAGCAGCAAGTTATTGAGGAGGAAGCAGCAGCACCTG
CTGATACTGCTCTTGCGACAGCTTGTTATAGCGGCAGTGGAAGTGGTGGT
GGGCGGGCGCGACGCTTCCCATCCCTCTTCTTGTCGGgtcggcaactaac
tatcatgtctccagccgggttgctgctgctgccgctgctgctgctgctgc
tgctactacctgtgctgctggttctagcatttctacgacatctactcact
catccttccctaatccgtcatctgatttcctccgtacttcctcagCGCCT
CTTATCTCGTATGCAACCGGCGGTGGGGCATTGGCCTCGGGAGATGGGGG
TGGAGGAGCAGGGGCAGCGACGAGTAAATTCAATTTAGATATATTTAGGA
AATTTCTGCTGGGGCCACGGACAGGAGGAGGAGGAGAAGGACGAGATGGA
GGAGAAGATGGAAAAGGAAAAGGAGGAGGAGGAAAAGGAGGAGGAGGAGG
AGAGGAAGGATGGGGTCAAGGGAGCGGGGGAGGAGGCGCAGGGACCAGCA
GCTATGGTTCCAGgtaggggggacccagagcgtctgctctggacgacagc
aaggaaggctggctgaggttagagcagggtttccagtcatcactcttgaa
ggccactttaaagGCTTCCTCTCGCGGGATGGGGAGGATGCAACAACAGG
AGCAGTAGCAGCAGCAGGAGCAGCAGCGGAAAGGGACAACCGCCGATGAC
TCCAACGACGACGGGGGGGGGAGCAGCGACAGCAGCTTgtgatggaatga
cccagactctgacggcagcccaacacctggaaagtcgaaatgggtaccag
gcctctcttgttctatttaagGCTTAAATCTGCCTTTTGCGTTGAAAGCG
AAGGCGTTGGAACCTCCTCCTTTTAAGGAAGGCAGCAGCAGTAGCAGCAG
CGGCAACGGTGGGGATGGATTTATGGCGCCCGCAATTGGCGCGATACAGC
AGTGGGTGGAGTGGAGTTTAAAAAAGGgtgcggacaggtatcgagtcact
gcacagcggtaggagatggcagcactgcaaagattccttctccccttgcc
tttgtcctcatctgcagGAGCAAGAGCCTCAGCAGCAGAAGTGACACCGG
AGGCTACTGTGACCGCATTGTGTCCTGCAGCCCCCTCTTCTTCCCAGTCT
ACCACTTTGTCTTTGTCAGCGATCCCCCACTACTGGCAGCAGCAGCAGCT
GCAGCAGCAGTACAACCCACTGGCTGGGTGCCGGCCTTCATTTTCTGGAC
GTGgtttgccttacacaagcctctgtgttagcatagaatggaaggaattt
ctcatgcgcgatgctcgggggcaggaggcttggaagcgggctactacgaa
gggggcgggatgcccgaaagcgggcgaggctatggaagtacctatctatt
gaaccagtatcccttggcggccgctttgcaatgccagcagcaccagcggt
cgtagtagtagtaggagcagtagcagaaactagaagaagaacctcaactc
ccgcttgcaagTCCTCAGCAGCTTGGCCAATCAAGTTTCTCCTGTGACTG
CTGGTGCTGTTCCAAACACTATTGCTAGGAGCAGCAGCAGTAGTATTAGT
ATAAGTAGTAGTATAAGTATAAGTAAAAGTAAATGTAGTAGTATTAGTAT
TAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTGGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTATAAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TATTAGTATTAGTATTAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTGATAGTAGTAGTAGCAGCAGCAGTGCGA
CATTTGGCGTGGACgtaaactaagtacagcctaattcgccttctgctttt
gcgcctactcctgggttgtatcgatctcttgaagcatgagcgcaggacaa
tgtgaggcattacgaaaagtcgagtcgagacgggtgctggccggcacaag
ctcatttactttttatgtcccacacccacccgcgagcagtggcttagaca
ccgagagggaggagaggaccaccgacagttgcaggagcgacggcggtaag
gggcagcagcaggcatccccttagtcagtgactgtaagagcagcagcacc
actaactgagtcttaccttccttaccagcatcatcattatcacgatccct
ctccgcagGTAGACGATCTTGGACAGCGTAGCTCGAACTGGATCAGTGAG
ATCGAGGTGAAGCGTACCCACGTCGTCGACCGTGGTTTTTTCCTTTGGAG
TGATTTCTCAGAGAGTTACCTTCTCGGGGAGGAGAGCAGCCACGCGTGCA
GCAGCAGGAGCAGTAGAAGTAGCAGTAAAAGTAGCAGTAGAAGTAGCAGC
AGTCATGGCACAAAGTCCACCAGCCGGAGCAACCATCACGAGGAAAGTGG
GCAAGACTTCACGAAAATCTTTCGAGAAGAAGCCCTTTCAACTGGAGCAG
CAACTGAAGGAGCCCGAAGGAGAGGGATAGATCTCGTCCCTCACAGCCCA
TAA
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protein sequence of NO19G02070.1

>NO19G02070.1-protein ID=NO19G02070.1-protein|Name=NO19G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MHVGGSVAAGSAVCAEAVALCEQQVIEEEAAAPADTALATACYSGSGSGG
GRARRFPSLFLSAPLISYATGGGALASGDGGGGAGAATSKFNLDIFRKFL
LGPRTGGGGEGRDGGEDGKGKGGGGKGGGGGEEGWGQGSGGGGAGTSSYG
SRLPLAGWGGCNNRSSSSSRSSSGKGQPPMTPTTTGGGAATAACLNLPFA
LKAKALEPPPFKEGSSSSSSGNGGDGFMAPAIGAIQQWVEWSLKKGARAS
AAEVTPEATVTALCPAAPSSSQSTTLSLSAIPHYWQQQQLQQQYNPLAGC
RPSFSGRVLSSLANQVSPVTAGAVPNTIARSSSSSISISSSISISKSKCS
SISISISSSSSSSSSGGGSSSSSSSSSSSSSISISSSSSSSSSSSSSSSS
SSSSISISISISSSSSSSSSSSSSSSSSISSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSDSSSSSSSATFGVDVDDLGQRSSNWISEIEVKRTHVVDR
GFFLWSDFSESYLLGEESSHACSSRSSRSSSKSSSRSSSSHGTKSTSRSN
HHEESGQDFTKIFREEALSTGAATEGARRRGIDLVPHSP*
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Synonyms
Publications