NO19G02070.1, NO19G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02070.1
Unique NameNO19G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr19:598613..601415 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:598613..601415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02070NO19G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02070.1NO19G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02070.1.cds1NO19G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02070.1.cds2NO19G02070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02070.1.cds3NO19G02070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02070.1.cds4NO19G02070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02070.1.cds5NO19G02070.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02070.1.cds6NO19G02070.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02070.1.cds7NO19G02070.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02070.1 ID=NO19G02070.1|Name=NO19G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp
ATGCATGTAGGGGGAAGCGTCGCTGCAGGTAGTGCCGTCTGTGCTGAAGC
CGTGGCGTTGTGCGAGCAGCAAGTTATTGAGGAGGAAGCAGCAGCACCTG
CTGATACTGCTCTTGCGACAGCTTGTTATAGCGGCAGTGGAAGTGGTGGT
GGGCGGGCGCGACGCTTCCCATCCCTCTTCTTGTCGGCGCCTCTTATCTC
GTATGCAACCGGCGGTGGGGCATTGGCCTCGGGAGATGGGGGTGGAGGAG
CAGGGGCAGCGACGAGTAAATTCAATTTAGATATATTTAGGAAATTTCTG
CTGGGGCCACGGACAGGAGGAGGAGGAGAAGGACGAGATGGAGGAGAAGA
TGGAAAAGGAAAAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGAGGAAG
GATGGGGTCAAGGGAGCGGGGGAGGAGGCGCAGGGACCAGCAGCTATGGT
TCCAGGCTTCCTCTCGCGGGATGGGGAGGATGCAACAACAGGAGCAGTAG
CAGCAGCAGGAGCAGCAGCGGAAAGGGACAACCGCCGATGACTCCAACGA
CGACGGGGGGGGGAGCAGCGACAGCAGCTTGCTTAAATCTGCCTTTTGCG
TTGAAAGCGAAGGCGTTGGAACCTCCTCCTTTTAAGGAAGGCAGCAGCAG
TAGCAGCAGCGGCAACGGTGGGGATGGATTTATGGCGCCCGCAATTGGCG
CGATACAGCAGTGGGTGGAGTGGAGTTTAAAAAAGGGAGCAAGAGCCTCA
GCAGCAGAAGTGACACCGGAGGCTACTGTGACCGCATTGTGTCCTGCAGC
CCCCTCTTCTTCCCAGTCTACCACTTTGTCTTTGTCAGCGATCCCCCACT
ACTGGCAGCAGCAGCAGCTGCAGCAGCAGTACAACCCACTGGCTGGGTGC
CGGCCTTCATTTTCTGGACGTGTCCTCAGCAGCTTGGCCAATCAAGTTTC
TCCTGTGACTGCTGGTGCTGTTCCAAACACTATTGCTAGGAGCAGCAGCA
GTAGTATTAGTATAAGTAGTAGTATAAGTATAAGTAAAAGTAAATGTAGT
AGTATTAGTATTAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGG
TGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTA
TAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTATTAGTATTAGTATTAGTATAAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGATAGTAGTAGTAGCAG
CAGCAGTGCGACATTTGGCGTGGACGTAGACGATCTTGGACAGCGTAGCT
CGAACTGGATCAGTGAGATCGAGGTGAAGCGTACCCACGTCGTCGACCGT
GGTTTTTTCCTTTGGAGTGATTTCTCAGAGAGTTACCTTCTCGGGGAGGA
GAGCAGCCACGCGTGCAGCAGCAGGAGCAGTAGAAGTAGCAGTAAAAGTA
GCAGTAGAAGTAGCAGCAGTCATGGCACAAAGTCCACCAGCCGGAGCAAC
CATCACGAGGAAAGTGGGCAAGACTTCACGAAAATCTTTCGAGAAGAAGC
CCTTTCAACTGGAGCAGCAACTGAAGGAGCCCGAAGGAGAGGGATAGATC
TCGTCCCTCACAGCCCATAA
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protein sequence of NO19G02070.1

>NO19G02070.1-protein ID=NO19G02070.1-protein|Name=NO19G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MHVGGSVAAGSAVCAEAVALCEQQVIEEEAAAPADTALATACYSGSGSGG
GRARRFPSLFLSAPLISYATGGGALASGDGGGGAGAATSKFNLDIFRKFL
LGPRTGGGGEGRDGGEDGKGKGGGGKGGGGGEEGWGQGSGGGGAGTSSYG
SRLPLAGWGGCNNRSSSSSRSSSGKGQPPMTPTTTGGGAATAACLNLPFA
LKAKALEPPPFKEGSSSSSSGNGGDGFMAPAIGAIQQWVEWSLKKGARAS
AAEVTPEATVTALCPAAPSSSQSTTLSLSAIPHYWQQQQLQQQYNPLAGC
RPSFSGRVLSSLANQVSPVTAGAVPNTIARSSSSSISISSSISISKSKCS
SISISISSSSSSSSSGGGSSSSSSSSSSSSSISISSSSSSSSSSSSSSSS
SSSSISISISISSSSSSSSSSSSSSSSSISSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSDSSSSSSSATFGVDVDDLGQRSSNWISEIEVKRTHVVDR
GFFLWSDFSESYLLGEESSHACSSRSSRSSSKSSSRSSSSHGTKSTSRSN
HHEESGQDFTKIFREEALSTGAATEGARRRGIDLVPHSP*
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mRNA from alignment at chr19:598613..601415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02070.1 ID=NO19G02070.1|Name=NO19G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2803bp|location=Sequence derived from alignment at chr19:598613..601415- (Nannochloropsis oceanica)
ATGCATGTAGGGGGAAGCGTCGCTGCAGGTAGTGCCGTCTGTGCTGAAGC
CGTGGCGTTGTGCGAGCAGCAAGTTATTGAGGAGGAAGCAGCAGCACCTG
CTGATACTGCTCTTGCGACAGCTTGTTATAGCGGCAGTGGAAGTGGTGGT
GGGCGGGCGCGACGCTTCCCATCCCTCTTCTTGTCGGGTCGGCAACTAAC
TATCATGTCTCCAGCCGGGTTGCTGCTGCTGCCGCTGCTGCTGCTGCTGC
TGCTACTACCTGTGCTGCTGGTTCTAGCATTTCTACGACATCTACTCACT
CATCCTTCCCTAATCCGTCATCTGATTTCCTCCGTACTTCCTCAGCGCCT
CTTATCTCGTATGCAACCGGCGGTGGGGCATTGGCCTCGGGAGATGGGGG
TGGAGGAGCAGGGGCAGCGACGAGTAAATTCAATTTAGATATATTTAGGA
AATTTCTGCTGGGGCCACGGACAGGAGGAGGAGGAGAAGGACGAGATGGA
GGAGAAGATGGAAAAGGAAAAGGAGGAGGAGGAAAAGGAGGAGGAGGAGG
AGAGGAAGGATGGGGTCAAGGGAGCGGGGGAGGAGGCGCAGGGACCAGCA
GCTATGGTTCCAGGTAGGGGGGACCCAGAGCGTCTGCTCTGGACGACAGC
AAGGAAGGCTGGCTGAGGTTAGAGCAGGGTTTCCAGTCATCACTCTTGAA
GGCCACTTTAAAGGCTTCCTCTCGCGGGATGGGGAGGATGCAACAACAGG
AGCAGTAGCAGCAGCAGGAGCAGCAGCGGAAAGGGACAACCGCCGATGAC
TCCAACGACGACGGGGGGGGGAGCAGCGACAGCAGCTTGTGATGGAATGA
CCCAGACTCTGACGGCAGCCCAACACCTGGAAAGTCGAAATGGGTACCAG
GCCTCTCTTGTTCTATTTAAGGCTTAAATCTGCCTTTTGCGTTGAAAGCG
AAGGCGTTGGAACCTCCTCCTTTTAAGGAAGGCAGCAGCAGTAGCAGCAG
CGGCAACGGTGGGGATGGATTTATGGCGCCCGCAATTGGCGCGATACAGC
AGTGGGTGGAGTGGAGTTTAAAAAAGGGTGCGGACAGGTATCGAGTCACT
GCACAGCGGTAGGAGATGGCAGCACTGCAAAGATTCCTTCTCCCCTTGCC
TTTGTCCTCATCTGCAGGAGCAAGAGCCTCAGCAGCAGAAGTGACACCGG
AGGCTACTGTGACCGCATTGTGTCCTGCAGCCCCCTCTTCTTCCCAGTCT
ACCACTTTGTCTTTGTCAGCGATCCCCCACTACTGGCAGCAGCAGCAGCT
GCAGCAGCAGTACAACCCACTGGCTGGGTGCCGGCCTTCATTTTCTGGAC
GTGGTTTGCCTTACACAAGCCTCTGTGTTAGCATAGAATGGAAGGAATTT
CTCATGCGCGATGCTCGGGGGCAGGAGGCTTGGAAGCGGGCTACTACGAA
GGGGGCGGGATGCCCGAAAGCGGGCGAGGCTATGGAAGTACCTATCTATT
GAACCAGTATCCCTTGGCGGCCGCTTTGCAATGCCAGCAGCACCAGCGGT
CGTAGTAGTAGTAGGAGCAGTAGCAGAAACTAGAAGAAGAACCTCAACTC
CCGCTTGCAAGTCCTCAGCAGCTTGGCCAATCAAGTTTCTCCTGTGACTG
CTGGTGCTGTTCCAAACACTATTGCTAGGAGCAGCAGCAGTAGTATTAGT
ATAAGTAGTAGTATAAGTATAAGTAAAAGTAAATGTAGTAGTATTAGTAT
TAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTGGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTATAAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TATTAGTATTAGTATTAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTGATAGTAGTAGTAGCAGCAGCAGTGCGA
CATTTGGCGTGGACGTAAACTAAGTACAGCCTAATTCGCCTTCTGCTTTT
GCGCCTACTCCTGGGTTGTATCGATCTCTTGAAGCATGAGCGCAGGACAA
TGTGAGGCATTACGAAAAGTCGAGTCGAGACGGGTGCTGGCCGGCACAAG
CTCATTTACTTTTTATGTCCCACACCCACCCGCGAGCAGTGGCTTAGACA
CCGAGAGGGAGGAGAGGACCACCGACAGTTGCAGGAGCGACGGCGGTAAG
GGGCAGCAGCAGGCATCCCCTTAGTCAGTGACTGTAAGAGCAGCAGCACC
ACTAACTGAGTCTTACCTTCCTTACCAGCATCATCATTATCACGATCCCT
CTCCGCAGGTAGACGATCTTGGACAGCGTAGCTCGAACTGGATCAGTGAG
ATCGAGGTGAAGCGTACCCACGTCGTCGACCGTGGTTTTTTCCTTTGGAG
TGATTTCTCAGAGAGTTACCTTCTCGGGGAGGAGAGCAGCCACGCGTGCA
GCAGCAGGAGCAGTAGAAGTAGCAGTAAAAGTAGCAGTAGAAGTAGCAGC
AGTCATGGCACAAAGTCCACCAGCCGGAGCAACCATCACGAGGAAAGTGG
GCAAGACTTCACGAAAATCTTTCGAGAAGAAGCCCTTTCAACTGGAGCAG
CAACTGAAGGAGCCCGAAGGAGAGGGATAGATCTCGTCCCTCACAGCCCA
TAA
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Coding sequence (CDS) from alignment at chr19:598613..601415-

>NO19G02070.1 ID=NO19G02070.1|Name=NO19G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr19:598613..601415- (Nannochloropsis oceanica)
ATGCATGTAGGGGGAAGCGTCGCTGCAGGTAGTGCCGTCTGTGCTGAAGC
CGTGGCGTTGTGCGAGCAGCAAGTTATTGAGGAGGAAGCAGCAGCACCTG
CTGATACTGCTCTTGCGACAGCTTGTTATAGCGGCAGTGGAAGTGGTGGT
GGGCGGGCGCGACGCTTCCCATCCCTCTTCTTGTCGGCGCCTCTTATCTC
GTATGCAACCGGCGGTGGGGCATTGGCCTCGGGAGATGGGGGTGGAGGAG
CAGGGGCAGCGACGAGTAAATTCAATTTAGATATATTTAGGAAATTTCTG
CTGGGGCCACGGACAGGAGGAGGAGGAGAAGGACGAGATGGAGGAGAAGA
TGGAAAAGGAAAAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGAGGAAG
GATGGGGTCAAGGGAGCGGGGGAGGAGGCGCAGGGACCAGCAGCTATGGT
TCCAGGCTTCCTCTCGCGGGATGGGGAGGATGCAACAACAGGAGCAGTAG
CAGCAGCAGGAGCAGCAGCGGAAAGGGACAACCGCCGATGACTCCAACGA
CGACGGGGGGGGGAGCAGCGACAGCAGCTTGCTTAAATCTGCCTTTTGCG
TTGAAAGCGAAGGCGTTGGAACCTCCTCCTTTTAAGGAAGGCAGCAGCAG
TAGCAGCAGCGGCAACGGTGGGGATGGATTTATGGCGCCCGCAATTGGCG
CGATACAGCAGTGGGTGGAGTGGAGTTTAAAAAAGGGAGCAAGAGCCTCA
GCAGCAGAAGTGACACCGGAGGCTACTGTGACCGCATTGTGTCCTGCAGC
CCCCTCTTCTTCCCAGTCTACCACTTTGTCTTTGTCAGCGATCCCCCACT
ACTGGCAGCAGCAGCAGCTGCAGCAGCAGTACAACCCACTGGCTGGGTGC
CGGCCTTCATTTTCTGGACGTGTCCTCAGCAGCTTGGCCAATCAAGTTTC
TCCTGTGACTGCTGGTGCTGTTCCAAACACTATTGCTAGGAGCAGCAGCA
GTAGTATTAGTATAAGTAGTAGTATAAGTATAAGTAAAAGTAAATGTAGT
AGTATTAGTATTAGTATAAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTGG
TGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTA
TAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTATTAGTATTAGTATTAGTATAAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGATAGTAGTAGTAGCAG
CAGCAGTGCGACATTTGGCGTGGACGTAGACGATCTTGGACAGCGTAGCT
CGAACTGGATCAGTGAGATCGAGGTGAAGCGTACCCACGTCGTCGACCGT
GGTTTTTTCCTTTGGAGTGATTTCTCAGAGAGTTACCTTCTCGGGGAGGA
GAGCAGCCACGCGTGCAGCAGCAGGAGCAGTAGAAGTAGCAGTAAAAGTA
GCAGTAGAAGTAGCAGCAGTCATGGCACAAAGTCCACCAGCCGGAGCAAC
CATCACGAGGAAAGTGGGCAAGACTTCACGAAAATCTTTCGAGAAGAAGC
CCTTTCAACTGGAGCAGCAACTGAAGGAGCCCGAAGGAGAGGGATAGATC
TCGTCCCTCACAGCCCATAA
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Synonyms
Publications