NO19G02040, NO19G02040 (gene) Nannochloropsis oceanica

Overview
NameNO19G02040
Unique NameNO19G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr19:596001..597597 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:596001..597597 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G02040 vs. NCBI_GenBank
Match: EWM23703.1 (hypothetical protein Naga_100030g8 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 2.900e-25
Identity = 164/293 (55.97%), Postives = 174/293 (59.39%), Query Frame = 0 
Query:    2 TTLMTVTADEKVEMSLDDLVKLE-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKPVLKQTQAGQTRKPGQAAKQSVLQAQSKRNLAINNARGIQPAPMVGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGPGGFKLPKGTTLKISINNTANAXXXXXXXXXXXXXXXXXXXXXXXXXXILNRSSGPRVSMKAMQAERQAGAGALARRMGRISVTQNTRQMLFNQSRGL 284
            T   TV+ADEKVEMSLDDL+KL+           XXXXXXXXXXXXXXXXXXXXXX       G RKP LKQ QAGQ RKPGQAAK+S +QAQSKRN A N +RGIQ  PM G+T                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              +    GFKLPKGTTLKISI+NT                               NR  G RVS+KA Q ERQ GAGAL RRMGRISVTQN RQ LF QSRGL
Sbjct:    3 TPQQTVSADEKVEMSLDDLIKLDRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARASKQSGARKP-LKQVQAGQMRKPGQAAKKSAVQAQSKRNTAFNQSRGIQVTPMTGIT-----------------------SAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFIFGGSGGAAGDKALSREGFKLPKGTTLKISISNTPKPAAAASVPSLRVPLKAKGG----------NRGGGQRVSLKAAQRERQMGAGALTRRMGRISVTQNNRQGLFAQSRGL 261
The following BLAST results are available for this feature:
BLAST of NO19G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23703.12.900e-2555.97hypothetical protein Naga_100030g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004545NSK004545Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02040.1NO19G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599337gene_7605Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g8gene6752Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02040.1NO19G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02040 ID=NO19G02040|Name=NO19G02040|organism=Nannochloropsis oceanica|type=gene|length=1597bp
GAACGCTGGAGGGAACCTACTTTTGGTGATGATGTCGGCTATATTTCATT
CGATTGACGGATTTGTTGATTTATTCTTTTGTGTCACTTGCCCTTTTGCC
CAACCTCCTCCCTCGTCACAGAACAAAGAAAGGCGGCAAAAGTCTGGTTT
CGTCACCTCCACCATCAGTTCATCATGCCCTGGCCCTGTGCGGTGCACTG
CACCACCGCAAACTCACGTCGGTTTTCCCAGTACGACAAGCACACGTTCC
ATGGAGTTAAGCTGGACAAGGCGAGGGTGCCGCCAGGGGTGCGGTGGCTA
GTACGGCACGCTGTCCTAGGCGCCTTCAAATTCTGCAAGCTTTCTTCGTC
ACCTACACTTGACACACGCGCGGCGGCATCGTCGTCCACACCCTGCGAAC
CGCCGCCGAATGTATAATTGCCATGAAGTGGTCTTGTATCTGCTGCGTCC
TTTCCCGTCCGTCACGCACAACAAGACACGCAGCCAACTAGCATGATACT
CATCGTCATGAACATGCTTCTCCCCCTCATCCTTCACACCACCACTACAC
TACAGCGGGAGGCACGCACGCCCACGTGACAGCCATGACCACTCTCATGA
CGGTAACCGCGGATGAGAAGGTGGAGATGAGCTTAGACGATCTGGTCAAG
CTGGAACGCAAGCAGCAGCAACAACAGAAGAAGAAGCCCATCGCTCCTGC
AGCGGCTGGCGGTGCCCAGAACAGCAAACAGAACAAGCGAGGCGGAGTCC
GTAAGCCCGTTCTGAAGCAGACACAGGCAGGGCAAACACGTAAACCGGGC
CAGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGAGCAAGCGGAACCTGGC
CATCAACAATGCACGTGGTATCCAACCCGCACCAATGGTCGGCGTCACGA
CAGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAAGAAGAAGGCCTCGCCC
GCACCTAAGAAGATGTCGATCAAGGTCAGCAATGTCCAGGCGAACGGCGG
TGGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTCACTTCACTGGACGGTG
GTGTCAGCGGCAAGAAGGCTGCGGACTTTGTATTTGACAGCGCCGTCGGC
AATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCTTTGGGCCTGGAGGCTT
CAAACTACCCAAGGGCACCACCCTCAAGATTTCCATTAATAATACTGCCA
ACGCTGCGACTGCCACGACCCCTGTCAATCCCATGGCCGCGCAGCGTAAA
AAGAAGCAGCAGCAGCCACAGCAGATGCAGGTGATTTTGAATCGAAGCAG
TGGTCCTCGTGTGAGTATGAAGGCGATGCAAGCGGAGCGACAGGCAGGGG
CAGGGGCTTTGGCCCGACGGATGGGTCGCATTTCCGTGACGCAGAATACG
CGGCAGATGCTTTTCAACCAAAGCCGTGGCTTGCCTCCGACTGCACCACA
GCAATTGCAGGTGACGACTGCGGGGGGTGGGGGGAAAACAAAGAAAAAGA
TAAGTTCTGGTGGAGGAATGGGTGGGGGGAACCCGCGTCAGGTGATTGTG
CGGCGTCGGGTGAAATAAGGCAGGAGCTCTTGTCTTATTCCTCGGGG
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protein sequence of NO19G02040.1

>NO19G02040.1-protein ID=NO19G02040.1-protein|Name=NO19G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MTTLMTVTADEKVEMSLDDLVKLERKQQQQQKKKPIAPAAAGGAQNSKQN
KRGGVRKPVLKQTQAGQTRKPGQAAKQSVLQAQSKRNLAINNARGIQPAP
MVGVTTAGAAGGKKRKKKKASPAPKKMSIKVSNVQANGGGRRGGVGGGGV
TSLDGGVSGKKAADFVFDSAVGNGGSGGGGGESFGPGGFKLPKGTTLKIS
INNTANAATATTPVNPMAAQRKKKQQQPQQMQVILNRSSGPRVSMKAMQA
ERQAGAGALARRMGRISVTQNTRQMLFNQSRGLPPTAPQQLQVTTAGGGG
KTKKKISSGGGMGGGNPRQVIVRRRVK*
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Synonyms
Publications