NO19G02040.1, NO19G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02040.1
Unique NameNO19G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr19:596001..597597 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:596001..597597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02040.1 vs.
Match: EWM23703.1 (hypothetical protein Naga_100030g8 [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 6.900e-51
Identity = 172/338 (50.89%), Postives = 201/338 (59.47%), Query Frame = 0 
Query:    2 TTLMTVTADEKVEMSLDDLVKLERKQQ---QQQKKKPIAPAAAGGAQNSKQ--------NKRGGVRKPVLKQTQAGQTRKPGQAAKQSVLQAQSKRNLAINNARGIQPAPMVGVTTAGAAGGKKRKKKKASPAPKKMSIKVSNVQANGGGRRGGVGGGGVTSLDGGVSGK-KAADFVFDSAVGNGGSGGGGGE-SFGPGGFKLPKGTTLKISINNTANAATATTPVNPMAAQRKKKQQQPQQMQVILNRSSGPRVSMKAMQAERQAGAGALARRMGRISVTQNTRQMLFNQSRGLPPTAPQQLQVTTAGGGGK-TKKKISSGGGMGGGNPRQVIVRRR 326
            T   TV+ADEKVEMSLDDL+KL+RKQQ   +++KKKP  P AA  AQ  +Q        +K+ G RKP LKQ QAGQ RKPGQAAK+S +QAQSKRN A N +RGIQ  PM G+T+A A G KK KKKKA+                        G GG        +GK  AA F+F      GGSGG  G+ +    GFKLPKGTTLKISI+NT   A A + V  +    K K           NR  G RVS+KA Q ERQ GAGAL RRMGRISVTQN RQ LF QSRGL  T P+Q+ V  AG GG   KKK ++GG   G   RQV+VRR+
Sbjct:    3 TPQQTVSADEKVEMSLDDLIKLDRKQQLVEKKKKKKPTVPPAAAKAQQQQQQGKDSARASKQSGARKP-LKQVQAGQMRKPGQAAKKSAVQAQSKRNTAFNQSRGIQVTPMTGITSA-ATGKKKAKKKKAA------------------ANMTSAGNGGAPKSGASQAGKAMAAGFIF------GGSGGAAGDKALSREGFKLPKGTTLKISISNTPKPAAAAS-VPSLRVPLKAKGG---------NRGGGQRVSLKAAQRERQMGAGALTRRMGRISVTQNNRQGLFAQSRGL--TFPEQVPVAQAGAGGTGGKKKKTAGGVFVGEKSRQVMVRRK 302
The following BLAST results are available for this feature:
BLAST of NO19G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23703.16.900e-5150.89hypothetical protein Naga_100030g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02040NO19G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02040.1NO19G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02040.1.cds1NO19G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02040.1 ID=NO19G02040.1|Name=NO19G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
GAACGCTGGAGGGAACCTACTTTTGGTGATGATGTCGGCTATATTTCATT
CGATTGACGGATTTGTTGATTTATTCTTTTGTGTCACTTGCCCTTTTGCC
CAACCTCCTCCCTCGTCACAGAACAAAGAAAGGCGGCAAAAGTCTGGTTT
CGTCACCTCCACCATCAGTTCATCATGCCCTGGCCCTGTGCGGTGCACTG
CACCACCGCAAACTCACGTCGGTTTTCCCAGTACGACAAGCACACGTTCC
ATGGAGTTAAGCTGGACAAGGCGAGGGTGCCGCCAGGGGTGCGGTGGCTA
GTACGGCACGCTGTCCTAGGCGCCTTCAAATTCTGCAAGCTTTCTTCGTC
ACCTACACTTGACACACGCGCGGCGGCATCGTCGTCCACACCCTGCGAAC
CGCCGCCGAATGTATAATTGCCATGAAGTGGTCTTGTATCTGCTGCGTCC
TTTCCCGTCCGTCACGCACAACAAGACACGCAGCCAACTAGCATGATACT
CATCGTCATGAACATGCTTCTCCCCCTCATCCTTCACACCACCACTACAC
TACAGCGGGAGGCACGCACGCCCACGTGACAGCCATGACCACTCTCATGA
CGGTAACCGCGGATGAGAAGGTGGAGATGAGCTTAGACGATCTGGTCAAG
CTGGAACGCAAGCAGCAGCAACAACAGAAGAAGAAGCCCATCGCTCCTGC
AGCGGCTGGCGGTGCCCAGAACAGCAAACAGAACAAGCGAGGCGGAGTCC
GTAAGCCCGTTCTGAAGCAGACACAGGCAGGGCAAACACGTAAACCGGGC
CAGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGAGCAAGCGGAACCTGGC
CATCAACAATGCACGTGGTATCCAACCCGCACCAATGGTCGGCGTCACGA
CAGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAAGAAGAAGGCCTCGCCC
GCACCTAAGAAGATGTCGATCAAGGTCAGCAATGTCCAGGCGAACGGCGG
TGGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTCACTTCACTGGACGGTG
GTGTCAGCGGCAAGAAGGCTGCGGACTTTGTATTTGACAGCGCCGTCGGC
AATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCTTTGGGCCTGGAGGCTT
CAAACTACCCAAGGGCACCACCCTCAAGATTTCCATTAATAATACTGCCA
ACGCTGCGACTGCCACGACCCCTGTCAATCCCATGGCCGCGCAGCGTAAA
AAGAAGCAGCAGCAGCCACAGCAGATGCAGGTGATTTTGAATCGAAGCAG
TGGTCCTCGTGTGAGTATGAAGGCGATGCAAGCGGAGCGACAGGCAGGGG
CAGGGGCTTTGGCCCGACGGATGGGTCGCATTTCCGTGACGCAGAATACG
CGGCAGATGCTTTTCAACCAAAGCCGTGGCTTGCCTCCGACTGCACCACA
GCAATTGCAGGTGACGACTGCGGGGGGTGGGGGGAAAACAAAGAAAAAGA
TAAGTTCTGGTGGAGGAATGGGTGGGGGGAACCCGCGTCAGGTGATTGTG
CGGCGTCGGGTGAAATAAGGCAGGAGCTCTTGTCTTATTCCTCGGGG
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protein sequence of NO19G02040.1

>NO19G02040.1-protein ID=NO19G02040.1-protein|Name=NO19G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MTTLMTVTADEKVEMSLDDLVKLERKQQQQQKKKPIAPAAAGGAQNSKQN
KRGGVRKPVLKQTQAGQTRKPGQAAKQSVLQAQSKRNLAINNARGIQPAP
MVGVTTAGAAGGKKRKKKKASPAPKKMSIKVSNVQANGGGRRGGVGGGGV
TSLDGGVSGKKAADFVFDSAVGNGGSGGGGGESFGPGGFKLPKGTTLKIS
INNTANAATATTPVNPMAAQRKKKQQQPQQMQVILNRSSGPRVSMKAMQA
ERQAGAGALARRMGRISVTQNTRQMLFNQSRGLPPTAPQQLQVTTAGGGG
KTKKKISSGGGMGGGNPRQVIVRRRVK*
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mRNA from alignment at chr19:596001..597597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02040.1 ID=NO19G02040.1|Name=NO19G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at chr19:596001..597597- (Nannochloropsis oceanica)
GAACGCTGGAGGGAACCTACTTTTGGTGATGATGTCGGCTATATTTCATT
CGATTGACGGATTTGTTGATTTATTCTTTTGTGTCACTTGCCCTTTTGCC
CAACCTCCTCCCTCGTCACAGAACAAAGAAAGGCGGCAAAAGTCTGGTTT
CGTCACCTCCACCATCAGTTCATCATGCCCTGGCCCTGTGCGGTGCACTG
CACCACCGCAAACTCACGTCGGTTTTCCCAGTACGACAAGCACACGTTCC
ATGGAGTTAAGCTGGACAAGGCGAGGGTGCCGCCAGGGGTGCGGTGGCTA
GTACGGCACGCTGTCCTAGGCGCCTTCAAATTCTGCAAGCTTTCTTCGTC
ACCTACACTTGACACACGCGCGGCGGCATCGTCGTCCACACCCTGCGAAC
CGCCGCCGAATGTATAATTGCCATGAAGTGGTCTTGTATCTGCTGCGTCC
TTTCCCGTCCGTCACGCACAACAAGACACGCAGCCAACTAGCATGATACT
CATCGTCATGAACATGCTTCTCCCCCTCATCCTTCACACCACCACTACAC
TACAGCGGGAGGCACGCACGCCCACGTGACAGCCATGACCACTCTCATGA
CGGTAACCGCGGATGAGAAGGTGGAGATGAGCTTAGACGATCTGGTCAAG
CTGGAACGCAAGCAGCAGCAACAACAGAAGAAGAAGCCCATCGCTCCTGC
AGCGGCTGGCGGTGCCCAGAACAGCAAACAGAACAAGCGAGGCGGAGTCC
GTAAGCCCGTTCTGAAGCAGACACAGGCAGGGCAAACACGTAAACCGGGC
CAGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGAGCAAGCGGAACCTGGC
CATCAACAATGCACGTGGTATCCAACCCGCACCAATGGTCGGCGTCACGA
CAGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAAGAAGAAGGCCTCGCCC
GCACCTAAGAAGATGTCGATCAAGGTCAGCAATGTCCAGGCGAACGGCGG
TGGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTCACTTCACTGGACGGTG
GTGTCAGCGGCAAGAAGGCTGCGGACTTTGTATTTGACAGCGCCGTCGGC
AATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCTTTGGGCCTGGAGGCTT
CAAACTACCCAAGGGCACCACCCTCAAGATTTCCATTAATAATACTGCCA
ACGCTGCGACTGCCACGACCCCTGTCAATCCCATGGCCGCGCAGCGTAAA
AAGAAGCAGCAGCAGCCACAGCAGATGCAGGTGATTTTGAATCGAAGCAG
TGGTCCTCGTGTGAGTATGAAGGCGATGCAAGCGGAGCGACAGGCAGGGG
CAGGGGCTTTGGCCCGACGGATGGGTCGCATTTCCGTGACGCAGAATACG
CGGCAGATGCTTTTCAACCAAAGCCGTGGCTTGCCTCCGACTGCACCACA
GCAATTGCAGGTGACGACTGCGGGGGGTGGGGGGAAAACAAAGAAAAAGA
TAAGTTCTGGTGGAGGAATGGGTGGGGGGAACCCGCGTCAGGTGATTGTG
CGGCGTCGGGTGAAATAAGGCAGGAGCTCTTGTCTTATTCCTCGGGG
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Coding sequence (CDS) from alignment at chr19:596001..597597-

>NO19G02040.1 ID=NO19G02040.1|Name=NO19G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr19:596001..597597- (Nannochloropsis oceanica)
ATGACCACTCTCATGACGGTAACCGCGGATGAGAAGGTGGAGATGAGCTT
AGACGATCTGGTCAAGCTGGAACGCAAGCAGCAGCAACAACAGAAGAAGA
AGCCCATCGCTCCTGCAGCGGCTGGCGGTGCCCAGAACAGCAAACAGAAC
AAGCGAGGCGGAGTCCGTAAGCCCGTTCTGAAGCAGACACAGGCAGGGCA
AACACGTAAACCGGGCCAGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGA
GCAAGCGGAACCTGGCCATCAACAATGCACGTGGTATCCAACCCGCACCA
ATGGTCGGCGTCACGACAGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAA
GAAGAAGGCCTCGCCCGCACCTAAGAAGATGTCGATCAAGGTCAGCAATG
TCCAGGCGAACGGCGGTGGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTC
ACTTCACTGGACGGTGGTGTCAGCGGCAAGAAGGCTGCGGACTTTGTATT
TGACAGCGCCGTCGGCAATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCT
TTGGGCCTGGAGGCTTCAAACTACCCAAGGGCACCACCCTCAAGATTTCC
ATTAATAATACTGCCAACGCTGCGACTGCCACGACCCCTGTCAATCCCAT
GGCCGCGCAGCGTAAAAAGAAGCAGCAGCAGCCACAGCAGATGCAGGTGA
TTTTGAATCGAAGCAGTGGTCCTCGTGTGAGTATGAAGGCGATGCAAGCG
GAGCGACAGGCAGGGGCAGGGGCTTTGGCCCGACGGATGGGTCGCATTTC
CGTGACGCAGAATACGCGGCAGATGCTTTTCAACCAAAGCCGTGGCTTGC
CTCCGACTGCACCACAGCAATTGCAGGTGACGACTGCGGGGGGTGGGGGG
AAAACAAAGAAAAAGATAAGTTCTGGTGGAGGAATGGGTGGGGGGAACCC
GCGTCAGGTGATTGTGCGGCGTCGGGTGAAATAA
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Synonyms
Publications