NO19G01990, NO19G01990 (gene) Nannochloropsis oceanica

Overview
NameNO19G01990
Unique NameNO19G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2145
Alignment locationchr19:579396..581540 -

Link to JBrowse

Properties
Property NameValue
DescriptionTransmembrane protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:579396..581540 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016559peroxisome fission
Vocabulary: Cellular Component
TermDefinition
GO:0005779integral component of peroxisomal membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008733PEX11
Homology
BLAST of NO19G01990 vs. NCBI_GenBank
Match: EWM23691.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 469.2 bits (1206), Expect = 1.400e-128
Identity = 279/420 (66.43%), Postives = 320/420 (76.19%), Query Frame = 0
Query:    1 MARRITMSCCTGGSCGGSSTLAGAAA-PFLVQVATGGAESLTRPLDVAYWLGLQDSFTTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPSDMERLRKHRLVRLLGAAP 420
            MA R+  SCC  G    +  L   A  P +V+V+  GAE LTRPLD+AYWLGLQDS++TK+P+SLKSVVALIR+LEGRDKVTKTIQYACRFLWWYHK + P D+ RG RFEKMFRASQ ARKCFHLFRT EELEKLQAL +D+K+P WRR L+M+RAAAMA+YW+YDNTCF I  KLS+FDQRTA+ARDGAAW+LANLIS+GLALYDLD+N K+R RLEDK  ALLKAR          S  H V  G AAE   +G                          +   N  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GDTVA+ DVEE LEEMA+A+VKRFDLVGD++R SCDF+VACN+PGFDLPL  LG+RLHDG+IGTAGL+SA+ AVYKAYP+DM RLRK RL+RLL   P
Sbjct:    1 MASRVPASCCRRGPYKDNRALTEVATPPCIVRVSPNGAEGLTRPLDLAYWLGLQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKAR----------SSNHVV--GGAAEERAMGR-----------------------DGKVEANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVYKAYPADMGRLRKRRLMRLLPTGP 385          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: GAX97950.1 (Hypothetical protein PINS_005783 [Pythium insidiosum])

HSP 1 Score: 98.2 bits (243), Expect = 6.400e-17
Identity = 74/343 (21.57%), Postives = 130/343 (37.90%), Query Frame = 0
Query:   59 KVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPS 402
            K PL+L + + +   LEGRDK+ K IQY  R + +Y  +  P  +  G RF ++F+ +Q +RK F L ++    +K   +  D     W++ L ++++  M  ++ YDN  F    K   +D   A  R G  W  AN+    +A+ +L+ + +  + ++D    +LK      R                                                                                                +E +  ++      RF     ML+ +CD +V+ N+ G  LP R+ G +LHDG+IG  G +SA++ +Y  +P+
Sbjct:    4 KAPLTLDTAIKVAFCLEGRDKINKFIQYGSRAMAFYLLSMDPKSD-MGKRFSELFKVTQQSRKAFRLGKSVTFYKKAMQIMDDKTLSPWQKYLQLIQSWGMVGFFVYDNMAFLAKAKFMPWDANEAAKRGGILWFCANVAGFMIAMNNLNADLEKEKCIQD----VLKTEEDPAR------------------------------------------------------------------------------------------------IESLRAQVQTLRQNRFKKFLAMLKVTCDLIVSSNTSGVRLPERVWGTKLHDGIIGPIGCVSALTVLYNTWPT 245          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: OWZ12924.1 (hypothetical protein PHMEG_00013834 [Phytophthora megakarya])

HSP 1 Score: 91.7 bits (226), Expect = 6.000e-15
Identity = 80/357 (22.41%), Postives = 136/357 (38.10%), Query Frame = 0
Query:   57 TTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPSDMERLRKHRLVR 414
            T+K P+SL + + L   LEGRDK++K +QY  R L +Y  +  P  +  G R   +++  QT+RK F L ++    +KLQ LS +    + +R L  ++   M  Y+  DN  F    K+  FD      R G  W  AN+     A+ +L+ + +  + + D    +L +   A R                                                                                                VE +  ++      RF  +  +L+ +CD +V+ N+ G  L  R+ G +LHDGVIG+ G +SA   +Y  +PS  +++++   V+
Sbjct:    2 TSKAPVSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDV-GQRLHALYKVMQTSRKAFRLGKSVTYYKKLQTLSDNKSLTEGQRYLQFVQNVGMLGYFMTDNLAFASKAKVLRFDAEELARRGGIMWFCANVAGFFNAVDNLNADVEKEKCVRD----ILASEEDATR------------------------------------------------------------------------------------------------VEALQTQLETLRNGRFKKLLAVLKVTCDLIVSSNTSGVRLAERITGSKLHDGVIGSVGCVSAAVVLYNTWPSAPKKVKEETEVK 257          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: CBN78625.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-14
Identity = 56/187 (29.95%), Postives = 89/187 (47.59%), Query Frame = 0
Query:   52 LQDSFTTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFL-WWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQAL---------SSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKAR 229
            + D+   K  +SL+S VA +R L+GRDK TK +QY  RFL WW        D     R  K++R +Q +RK F + +  +E+ KL+ +         SS T    +   LM +R  AM  +W +DN  +  I +   F    A      +WS+++ +++ L +  L +  K RR       A +  R
Sbjct:   12 IDDALAVKEAVSLESFVATLRKLDGRDKFTKLMQYGARFLAWWLSAR----DPDLSQRVFKLYRTTQRSRKAFRMLKILDEVVKLRQILRTAGGNSASSRTAFLGYAETLMSVRCLAMGAFWTFDNLNYLTITETVNFGVAKATRGFSRSWSVSSALAIMLGIDSLRKTEKKRREALSAYAAAVSER 194          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: CCA19221.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 89.4 bits (220), Expect = 3.000e-14
Identity = 80/349 (22.92%), Postives = 130/349 (37.25%), Query Frame = 0
Query:   66 SVVALIRTLEGRDKVTKTIQYACRFLWWY----HKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLAN----LISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPSDMERL 407
            +++++  TLEGRDK+TK +QY  R L WY    H N M      G  F  +++A+Q ARK F L ++     KL  +     T Q+ R L +++   M  +  YDN  F     +   D+  A+ + G  W +AN    L +V L   ++D+ + +R RL                                                            S  SN                                          V+   ++ +L+  ++  V        +L+ +CD VV+ N+ G  +P R++G +LHDG+IG  G +SAI  +Y  +P     L
Sbjct:   14 AIISVASTLEGRDKLTKLLQYGSRALSWYCFASHTNKM------GMGFSNLYKATQQARKVFRLGKSALLYAKLGTILEKKDTSQYERNLELIQQCGMMGFLAYDNIIFLSKANVVKLDEGKAVRQGGLLWFIANVAAFLRTVNLIKLNIDEENANRERL------------------------------------------------------------SFLSNADQTE-------------------------------------VSQAQLDALLQTRSKNLV-------SLLKITCDLVVSSNTSGVRIPERVMGTKLHDGIIGPVGCLSAILFLYNMWPKPQANL 252          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: ETI41008.1 (hypothetical protein F443_13717 [Phytophthora parasitica P1569] >ETK81101.1 hypothetical protein L915_13376 [Phytophthora parasitica] >ETL87790.1 hypothetical protein L917_13081 [Phytophthora parasitica] >ETO69679.1 hypothetical protein F444_13775 [Phytophthora parasitica P1976] >ETP10782.1 hypothetical protein F441_13646 [Phytophthora parasitica CJ01A1] >ETP38932.1 hypothetical protein F442_13568 [Phytophthora parasitica P10297])

HSP 1 Score: 89.0 bits (219), Expect = 3.900e-14
Identity = 79/344 (22.97%), Postives = 125/344 (36.34%), Query Frame = 0
Query:   58 TKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPS 402
            TK PLSL + + L   LEGRDK++K +QY  R L +Y  +  P  +  G R   +++  Q +RK F L ++    +KLQ LSS     + +R L  ++   M  Y+  DN  F    K+  FD      R G  W  AN+     AL  L+ + +  + + D    +L +     R  T  +   ++ +G                                                                                                RF  +  +L+  CD +V+ N+ G  L  R+ G +LHDG+IG+ G +SA   +Y  +PS
Sbjct:    3 TKAPLSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDV-GQRLHALYKVMQQSRKAFRLGKSVTYYKKLQTLSSSKSLTETQRYLQFIQNLGMLGYFLADNVAFASKAKVLRFDADDLARRGGVMWFCANVAGFFNALESLNADVEKEKCVRD----ILASEEDTARVETLQNQLETLRSG------------------------------------------------------------------------------------------------RFKKLLSVLKVMCDLIVSSNTSGVRLAERITGTKLHDGIIGSVGCVSAAVVLYNTWPS 245          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: XP_008894594.1 (hypothetical protein PPTG_03656 [Phytophthora parasitica INRA-310] >ETL34532.1 hypothetical protein L916_13256 [Phytophthora parasitica] >ETM41023.1 hypothetical protein L914_13167 [Phytophthora parasitica] >ETN20720.1 hypothetical protein PPTG_03656 [Phytophthora parasitica INRA-310] >KUF91860.1 50S ribosomal protein L19 [Phytophthora nicotianae] >KUG01661.1 Peroxisomal membrane protein 11 [Phytophthora nicotianae])

HSP 1 Score: 89.0 bits (219), Expect = 3.900e-14
Identity = 79/344 (22.97%), Postives = 125/344 (36.34%), Query Frame = 0
Query:   58 TKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPS 402
            TK PLSL + + L   LEGRDK++K +QY  R L +Y  +  P  +  G R   +++  Q +RK F L ++    +KLQ LSS     + +R L  ++   M  Y+  DN  F    K+  FD      R G  W  AN+     AL  L+ + +  + + D    +L +     R  T  +   ++ +G                                                                                                RF  +  +L+  CD +V+ N+ G  L  R+ G +LHDG+IG+ G +SA   +Y  +PS
Sbjct:    3 TKAPLSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDV-GQRLHALYKVMQQSRKAFRLGKSVTYYKKLQTLSSSKSLTETQRYLQFIQNLGMLGYFLADNVAFASKAKVLRFDADDLARRGGVMWFCANVAGFFNALESLNADVEKEKCVRD----ILASEEDTARVETLQNQLETLRSG------------------------------------------------------------------------------------------------RFKKLLSVLKVMCDLIVSSNTSGVRLAERITGTKLHDGIIGSVGCVSAAVVLYNTWPS 245          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: XP_012195417.1 (hypothetical protein SPRG_01660 [Saprolegnia parasitica CBS 223.65] >KDO33781.1 hypothetical protein SPRG_01660 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 89.0 bits (219), Expect = 3.900e-14
Identity = 75/331 (22.66%), Postives = 126/331 (38.07%), Query Frame = 0
Query:   66 SVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVY 397
            +++AL   LEGRDK+TK  QY+ R L +Y     P     G +   +F+A+Q+ARK F + ++F    K+ A   +     ++R L +++   M  ++ +DN  FF   K+   D   A+ R G  W  AN+    LA Y+  Q   D+                        +  H+  A   A+  +  +                                                                       D + +L E+      R+  +  +L+++CD +V+ N+ G  LP R+LG +LHDG+IG  G +SA   +Y
Sbjct:    4 TLLALSNDLEGRDKLTKLTQYSTRALAYYILAADP-KSVLGQQLTALFKATQSARKAFRVGKSFNYGNKISATLHNKAVAPYQRNLQLVQDVGMCTFFLFDNAAFFGANKVLNVDAAEAMKRGGYFWFCANVAGFVLA-YEALQKETDKE-----------------------TDLHNTLAAKKADNSLTPD-----------------------------------------------------------------------DAQALLAEIDAVQSARWKKMLTLLKSTCDLIVSSNTAGVRLPERILGKKLHDGIIGAVGCVSASVVLY 238          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: XP_008607015.1 (hypothetical protein SDRG_03169 [Saprolegnia diclina VS20] >EQC39743.1 hypothetical protein SDRG_03169 [Saprolegnia diclina VS20])

HSP 1 Score: 88.2 bits (217), Expect = 6.600e-14
Identity = 75/331 (22.66%), Postives = 125/331 (37.76%), Query Frame = 0
Query:   66 SVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVY 397
            +++ L   LEGRDK+TK  QY+ R + +Y     P     G +   +F+A+Q+ARK F + ++F    K+ A  ++     ++R L +++   M  ++ +DN  FF   K+   D   A+ R G  W  AN+    LA   L Q +       DK   L                 H+  A   A+  +  +                                                                       D + +L E+      R+     +L+++CD +V+ N+ G  LP R+LG +LHDG+IG  G +SA   +Y
Sbjct:    4 TLLTLSNDLEGRDKLTKLTQYSTRAIAYYILAADP-KSVLGQQLTALFKATQSARKAFRVGKSFNYGSKISATLNNKAVAPYQRNLQLVQDVGMCTFFLFDNAAFFGANKVLNIDTAEAMKRGGYFWFCANVAGFVLAYEALKQET-------DKETDL-----------------HNTLAAKKADNSLTPD-----------------------------------------------------------------------DAQALLAEIDAVQSARWKKTLTLLKSTCDLIVSSNTAGVRLPERILGKKLHDGIIGAVGCVSASVVLY 238          
BLAST of NO19G01990 vs. NCBI_GenBank
Match: POM79767.1 (Hypothetical protein PHPALM_2488 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 88.2 bits (217), Expect = 6.600e-14
Identity = 79/351 (22.51%), Postives = 130/351 (37.04%), Query Frame = 0
Query:   58 TKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGXXXXXXXXXXXXXXXXIWSSGASNRSLVNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPSDMERLRK 409
            +K PLSL + + L   LEGRDK++K +QY  R L +Y  +  P  +  G R   +++  Q +RK F L ++    +KLQ LS +    + +R L  ++   M  Y+  DN  F    K+  FD      R G  W  AN+     A+ +L+ + +  + + D    +L +   A R                                                                                                VE +  ++      RF  +  +L+ +CD +V+ N+ G  L  R+ G +LHDG+IG+ G +SA   +Y  +PS  + L K
Sbjct:    3 SKAPLSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDV-GQRLHALYKVMQQSRKAFRLGKSVTYYKKLQTLSGNKSLSEGQRYLQFIQNVGMLGYFITDNMAFASKAKVFRFDAEELSRRGGIMWFCANVAGFFNAVDNLNADVEKEKCVRD----ILASEEDATR------------------------------------------------------------------------------------------------VEALQNQLETLRSGRFKKLLAVLKVTCDLIVSSNTSGVRLSERITGTKLHDGIIGSVGCVSAAVVLYNTWPSAPKTLPK 252          
The following BLAST results are available for this feature:
BLAST of NO19G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23691.11.400e-12866.43transmembrane protein [Nannochloropsis gaditana][more]
GAX97950.16.400e-1721.57Hypothetical protein PINS_005783 [Pythium insidios... [more]
OWZ12924.16.000e-1522.41hypothetical protein PHMEG_00013834 [Phytophthora ... [more]
CBN78625.12.300e-1429.95conserved unknown protein [Ectocarpus siliculosus][more]
CCA19221.13.000e-1422.92conserved hypothetical protein [Albugo laibachii N... [more]
ETI41008.13.900e-1422.97hypothetical protein F443_13717 [Phytophthora para... [more]
XP_008894594.13.900e-1422.97hypothetical protein PPTG_03656 [Phytophthora para... [more]
XP_012195417.13.900e-1422.66hypothetical protein SPRG_01660 [Saprolegnia paras... [more]
XP_008607015.16.600e-1422.66hypothetical protein SDRG_03169 [Saprolegnia dicli... [more]
POM79767.16.600e-1422.51Hypothetical protein PHPALM_2488 [Phytophthora pal... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004540NSK004540Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01990.1NO19G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599303gene_7600Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g13gene6757Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01990.1NO19G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01990 ID=NO19G01990|Name=NO19G01990|organism=Nannochloropsis oceanica|type=gene|length=2145bp
GCGCGCAGGGGAAGGGGCACCAGTAGCCATTCCTCTTCTTCTTAAATCGG
CCTCTCCCTTCGTGGTGCAGCAGGCAGGCATACAAGGGCAAGGAGGCGCC
GTCCTGTTCAAAGCGAGATTTGCTTTGTGCGCGCTGTAGTGCATGCGCGA
GGGAGACGAACATTCAAAGCACGAATAGCCGCGACAATAATAATCTGAAA
TGGCTCGGCGTATCACCATGTCATGTTGCACGGGGGGCTCGTGCGGGGGT
AGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCTCGTGCAAGTAGCCAC
GGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACGTGGCTTACTGGCTGG
GATTACAGGATTCCTTCACCACGAAAGTGCCCCTATCTCTCAAATCCGTC
GTGGCACTCATCCGCACCCTGGAAGGCCGCGACAAAGTCACCAAGgtacg
acgatgataatgacaggatgtgatggtcgaatgaggatgtgaatggtgtg
agagagcgagatcggattgtagtcttgcgctattttagacagctttggtc
cagattttaggataatcacgacaagattgagagggcaatgcttgtgcacc
ttacttactccaattgaatccatcccctcgccttttactcatcattacca
acttacactagACGATCCAGTACGCTTGCCGGTTCCTGTGGTGGTACCAT
AAGAACCACATGCCTACGGACGAGAGCCGGGGCTCGCGATTTGAGAAGAT
GTTTCGTGCCTCCCAGACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCT
TTGAGGAGCTGGAGAAGCTGCAAGCCTTGTCCTCCGACACCAAGACGCCC
CAGTGGCGGCGCCGGCTGATGATGCTGCGGGCGGCAGCCATGGCGGTCTA
CTGGTTCTACGACAACACGTGCTTTTTCATCATCGTCAAGCTCTCCACCT
TCGACCAGCGTACAGCCATCGCTCGCGACGGCGCCGCGTGGTCATTGGCC
AACCTGATCTCCGTGGGCCTCGCGCTCTACGACCTGGACCAGAACAGCAA
GGATCGGAGGCGCCTTGAGGACAAGACGGTCGCACTGCTCAAGGCAAGGG
CTGGCGCCGGCAGGACTAGCACGGGCATCAGCCCCACCCACAGTGTGGCG
GCTGGCTCGGCCGCTGAGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTC
GACGGTGGGGAACGGTGCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTG
GAGCTAGCAATAGGAGTTTGGTGAATGGGAGCGGGAACGGCGTTGGCATT
GACATCAACAAGGAGCTTAGGAGCCGACAGGCCGTCACTTCCACCCCCAC
GACCAGCAGCAGCAGCCAGCCACAGGGCGGGGACACTGTGGCGGATATCG
ACGTTGAAGAGGTTCTAGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTT
GACCTCGTGGGTGACATGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTG
CAACTCCCCCGGATTCGACTTGCCACTGAGATTGCTTGGCTACCGGCTCC
ACGACGGCGTCATTGGTACGGCGGGCCTCATTTCGGCAATTTCGGCCGTG
TACAAGGCTTACCCGTCTGACATGGAACGTCTGCGGAAACACCGTCTCGT
CCGCTTACTTGGTGCGGCGCCCTGAGAGAGGACGGCTGGCAGCGAATGGG
GGGTAGGTGGGTTGTGTCTAGTCCCTATCTACACAGGCAATCTGATGTCC
TGTTATACTCTCTTAGAGTGTATGTAGATCGCGCTCTCTGCCTGCTTGTT
TGTTTGGTGGATATATGCCTCTTCAGCGCTGTGGATATGTCCTCGTCCCT
TCACGCCCCCTCGCCCCCTTTTTGTTTACAGAAGCAGTGCGAAAAAACGA
ACTTCTTCCTTTCGTGTGTTTAGCTGCAGGCCTTTGTCCATAATAGATTC
GATGTCCACGCCAGCCGTCTCGTCGAGGAGTAAATCTTCTTCCACTGCCT
GCATGTCCCTTTCAGCGTTTGTTTTTCGCCTTTTTAAAGGTATAAATTTG
ACGCCATTCTTCCTTCTTTTTTGCCCACTGAATTAATTAAGAAGAGAGCT
GAAGAAAAGACATATAAACAAAAGCAAGTCAGAATAACAGACAAA
back to top

protein sequence of NO19G01990.1

>NO19G01990.1-protein ID=NO19G01990.1-protein|Name=NO19G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MARRITMSCCTGGSCGGSSTLAGAAAPFLVQVATGGAESLTRPLDVAYWL
GLQDSFTTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMP
TDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRR
LMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISV
GLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAA
EGEIVGEGSTASTVGNGASAKVAGIWSSGASNRSLVNGSGNGVGIDINKE
LRSRQAVTSTPTTSSSSQPQGGDTVADIDVEEVLEEMARANVKRFDLVGD
MLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYP
SDMERLRKHRLVRLLGAAP*
back to top
Synonyms
Publications