NO19G01990.1, NO19G01990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01990.1
Unique Name	NO19G01990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1929
Alignment location	chr19:579396..581540 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:579396..581540 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO19G01990.1 vs.
Match: EWM23691.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 493.4 bits (1269), Expect = 6.800e-136
Identity = 262/420 (62.38%), Postives = 310/420 (73.81%), Query Frame = 0

Query:    1 MARRITMSCCTGGSCGGSSTLAGAAAP-FLVQVATGGAESLTRPLDVAYWLGLQDSFTTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMPTDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRRLMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISVGLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAAEGEIVGEGSTASTVGNGASAKVAGIWSSGASNRSLVNGSGNGVGIDINKELRSRQAVTSTPTTSSSSQPQGGDTVADIDVEEVLEEMARANVKRFDLVGDMLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYPSDMERLRKHRLVRLLGAAP 420
            MA R+  SCC  G    +  L   A P  +V+V+  GAE LTRPLD+AYWLGLQDS++TK+P+SLKSVVALIR+LEGRDKVTKTIQYACRFLWWYHK + P D+ RG RFEKMFRASQ ARKCFHLFRT EELEKLQAL +D+K+P WRR L+M+RAAAMA+YW+YDNTCF I  KLS+FDQRTA+ARDGAAW+LANLIS+GLALYDLD+N K+R RLEDK  ALLKAR          S  H V  G AAE   +G        G+G         S     + + NG+                  +S+ ++SSSSQPQGGDTVA+ DVEE LEEMA+A+VKRFDLVGD++R SCDF+VACN+PGFDLPL  LG+RLHDG+IGTAGL+SA+ AVYKAYP+DM RLRK RL+RLL   P
Sbjct:    1 MASRVPASCCRRGPYKDNRALTEVATPPCIVRVSPNGAEGLTRPLDLAYWLGLQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKAR----------SSNHVV--GGAAEERAMGRDGKVEANGHG--------HSDAHGRKEMENGT---------------LTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVYKAYPADMGRLRKRRLMRLLPTGP 385

The following BLAST results are available for this feature:

BLAST of NO19G01990.1 vs.

BLAST of NO19G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23691.1	6.800e-136	62.38	transmembrane protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G01990	NO19G01990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01990.1	NO19G01990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01990.1.cds1	NO19G01990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G01990.1.cds2	NO19G01990.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:579396..581540-
coding sequence from alignment at chr19:579396..581540-

mRNA sequence

>NO19G01990.1 ID=NO19G01990.1|Name=NO19G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp
GCGCGCAGGGGAAGGGGCACCAGTAGCCATTCCTCTTCTTCTTAAATCGG
CCTCTCCCTTCGTGGTGCAGCAGGCAGGCATACAAGGGCAAGGAGGCGCC
GTCCTGTTCAAAGCGAGATTTGCTTTGTGCGCGCTGTAGTGCATGCGCGA
GGGAGACGAACATTCAAAGCACGAATAGCCGCGACAATAATAATCTGAAA
TGGCTCGGCGTATCACCATGTCATGTTGCACGGGGGGCTCGTGCGGGGGT
AGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCTCGTGCAAGTAGCCAC
GGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACGTGGCTTACTGGCTGG
GATTACAGGATTCCTTCACCACGAAAGTGCCCCTATCTCTCAAATCCGTC
GTGGCACTCATCCGCACCCTGGAAGGCCGCGACAAAGTCACCAAGACGAT
CCAGTACGCTTGCCGGTTCCTGTGGTGGTACCATAAGAACCACATGCCTA
CGGACGAGAGCCGGGGCTCGCGATTTGAGAAGATGTTTCGTGCCTCCCAG
ACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCTTTGAGGAGCTGGAGAA
GCTGCAAGCCTTGTCCTCCGACACCAAGACGCCCCAGTGGCGGCGCCGGC
TGATGATGCTGCGGGCGGCAGCCATGGCGGTCTACTGGTTCTACGACAAC
ACGTGCTTTTTCATCATCGTCAAGCTCTCCACCTTCGACCAGCGTACAGC
CATCGCTCGCGACGGCGCCGCGTGGTCATTGGCCAACCTGATCTCCGTGG
GCCTCGCGCTCTACGACCTGGACCAGAACAGCAAGGATCGGAGGCGCCTT
GAGGACAAGACGGTCGCACTGCTCAAGGCAAGGGCTGGCGCCGGCAGGAC
TAGCACGGGCATCAGCCCCACCCACAGTGTGGCGGCTGGCTCGGCCGCTG
AGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTCGACGGTGGGGAACGGT
GCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTGGAGCTAGCAATAGGAG
TTTGGTGAATGGGAGCGGGAACGGCGTTGGCATTGACATCAACAAGGAGC
TTAGGAGCCGACAGGCCGTCACTTCCACCCCCACGACCAGCAGCAGCAGC
CAGCCACAGGGCGGGGACACTGTGGCGGATATCGACGTTGAAGAGGTTCT
AGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTTGACCTCGTGGGTGACA
TGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTGCAACTCCCCCGGATTC
GACTTGCCACTGAGATTGCTTGGCTACCGGCTCCACGACGGCGTCATTGG
TACGGCGGGCCTCATTTCGGCAATTTCGGCCGTGTACAAGGCTTACCCGT
CTGACATGGAACGTCTGCGGAAACACCGTCTCGTCCGCTTACTTGGTGCG
GCGCCCTGAGAGAGGACGGCTGGCAGCGAATGGGGGGTAGGTGGGTTGTG
TCTAGTCCCTATCTACACAGGCAATCTGATGTCCTGTTATACTCTCTTAG
AGTGTATGTAGATCGCGCTCTCTGCCTGCTTGTTTGTTTGGTGGATATAT
GCCTCTTCAGCGCTGTGGATATGTCCTCGTCCCTTCACGCCCCCTCGCCC
CCTTTTTGTTTACAGAAGCAGTGCGAAAAAACGAACTTCTTCCTTTCGTG
TGTTTAGCTGCAGGCCTTTGTCCATAATAGATTCGATGTCCACGCCAGCC
GTCTCGTCGAGGAGTAAATCTTCTTCCACTGCCTGCATGTCCCTTTCAGC
GTTTGTTTTTCGCCTTTTTAAAGGTATAAATTTGACGCCATTCTTCCTTC
TTTTTTGCCCACTGAATTAATTAAGAAGAGAGCTGAAGAAAAGACATATA
AACAAAAGCAAGTCAGAATAACAGACAAA

protein sequence of NO19G01990.1

>NO19G01990.1-protein ID=NO19G01990.1-protein|Name=NO19G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MARRITMSCCTGGSCGGSSTLAGAAAPFLVQVATGGAESLTRPLDVAYWL
GLQDSFTTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMP
TDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRR
LMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISV
GLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAA
EGEIVGEGSTASTVGNGASAKVAGIWSSGASNRSLVNGSGNGVGIDINKE
LRSRQAVTSTPTTSSSSQPQGGDTVADIDVEEVLEEMARANVKRFDLVGD
MLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYP
SDMERLRKHRLVRLLGAAP*

mRNA from alignment at chr19:579396..581540-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G01990.1 ID=NO19G01990.1|Name=NO19G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp|location=Sequence derived from alignment at chr19:579396..581540- (Nannochloropsis oceanica)
GCGCGCAGGGGAAGGGGCACCAGTAGCCATTCCTCTTCTTCTTAAATCGG
CCTCTCCCTTCGTGGTGCAGCAGGCAGGCATACAAGGGCAAGGAGGCGCC
GTCCTGTTCAAAGCGAGATTTGCTTTGTGCGCGCTGTAGTGCATGCGCGA
GGGAGACGAACATTCAAAGCACGAATAGCCGCGACAATAATAATCTGAAA
TGGCTCGGCGTATCACCATGTCATGTTGCACGGGGGGCTCGTGCGGGGGT
AGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCTCGTGCAAGTAGCCAC
GGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACGTGGCTTACTGGCTGG
GATTACAGGATTCCTTCACCACGAAAGTGCCCCTATCTCTCAAATCCGTC
GTGGCACTCATCCGCACCCTGGAAGGCCGCGACAAAGTCACCAAGGTACG
ACGATGATAATGACAGGATGTGATGGTCGAATGAGGATGTGAATGGTGTG
AGAGAGCGAGATCGGATTGTAGTCTTGCGCTATTTTAGACAGCTTTGGTC
CAGATTTTAGGATAATCACGACAAGATTGAGAGGGCAATGCTTGTGCACC
TTACTTACTCCAATTGAATCCATCCCCTCGCCTTTTACTCATCATTACCA
ACTTACACTAGACGATCCAGTACGCTTGCCGGTTCCTGTGGTGGTACCAT
AAGAACCACATGCCTACGGACGAGAGCCGGGGCTCGCGATTTGAGAAGAT
GTTTCGTGCCTCCCAGACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCT
TTGAGGAGCTGGAGAAGCTGCAAGCCTTGTCCTCCGACACCAAGACGCCC
CAGTGGCGGCGCCGGCTGATGATGCTGCGGGCGGCAGCCATGGCGGTCTA
CTGGTTCTACGACAACACGTGCTTTTTCATCATCGTCAAGCTCTCCACCT
TCGACCAGCGTACAGCCATCGCTCGCGACGGCGCCGCGTGGTCATTGGCC
AACCTGATCTCCGTGGGCCTCGCGCTCTACGACCTGGACCAGAACAGCAA
GGATCGGAGGCGCCTTGAGGACAAGACGGTCGCACTGCTCAAGGCAAGGG
CTGGCGCCGGCAGGACTAGCACGGGCATCAGCCCCACCCACAGTGTGGCG
GCTGGCTCGGCCGCTGAGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTC
GACGGTGGGGAACGGTGCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTG
GAGCTAGCAATAGGAGTTTGGTGAATGGGAGCGGGAACGGCGTTGGCATT
GACATCAACAAGGAGCTTAGGAGCCGACAGGCCGTCACTTCCACCCCCAC
GACCAGCAGCAGCAGCCAGCCACAGGGCGGGGACACTGTGGCGGATATCG
ACGTTGAAGAGGTTCTAGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTT
GACCTCGTGGGTGACATGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTG
CAACTCCCCCGGATTCGACTTGCCACTGAGATTGCTTGGCTACCGGCTCC
ACGACGGCGTCATTGGTACGGCGGGCCTCATTTCGGCAATTTCGGCCGTG
TACAAGGCTTACCCGTCTGACATGGAACGTCTGCGGAAACACCGTCTCGT
CCGCTTACTTGGTGCGGCGCCCTGAGAGAGGACGGCTGGCAGCGAATGGG
GGGTAGGTGGGTTGTGTCTAGTCCCTATCTACACAGGCAATCTGATGTCC
TGTTATACTCTCTTAGAGTGTATGTAGATCGCGCTCTCTGCCTGCTTGTT
TGTTTGGTGGATATATGCCTCTTCAGCGCTGTGGATATGTCCTCGTCCCT
TCACGCCCCCTCGCCCCCTTTTTGTTTACAGAAGCAGTGCGAAAAAACGA
ACTTCTTCCTTTCGTGTGTTTAGCTGCAGGCCTTTGTCCATAATAGATTC
GATGTCCACGCCAGCCGTCTCGTCGAGGAGTAAATCTTCTTCCACTGCCT
GCATGTCCCTTTCAGCGTTTGTTTTTCGCCTTTTTAAAGGTATAAATTTG
ACGCCATTCTTCCTTCTTTTTTGCCCACTGAATTAATTAAGAAGAGAGCT
GAAGAAAAGACATATAAACAAAAGCAAGTCAGAATAACAGACAAA

Coding sequence (CDS) from alignment at chr19:579396..581540-

>NO19G01990.1 ID=NO19G01990.1|Name=NO19G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr19:579396..581540- (Nannochloropsis oceanica)
ATGGCTCGGCGTATCACCATGTCATGTTGCACGGGGGGCTCGTGCGGGGG
TAGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCTCGTGCAAGTAGCCA
CGGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACGTGGCTTACTGGCTG
GGATTACAGGATTCCTTCACCACGAAAGTGCCCCTATCTCTCAAATCCGT
CGTGGCACTCATCCGCACCCTGGAAGGCCGCGACAAAGTCACCAAGACGA
TCCAGTACGCTTGCCGGTTCCTGTGGTGGTACCATAAGAACCACATGCCT
ACGGACGAGAGCCGGGGCTCGCGATTTGAGAAGATGTTTCGTGCCTCCCA
GACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCTTTGAGGAGCTGGAGA
AGCTGCAAGCCTTGTCCTCCGACACCAAGACGCCCCAGTGGCGGCGCCGG
CTGATGATGCTGCGGGCGGCAGCCATGGCGGTCTACTGGTTCTACGACAA
CACGTGCTTTTTCATCATCGTCAAGCTCTCCACCTTCGACCAGCGTACAG
CCATCGCTCGCGACGGCGCCGCGTGGTCATTGGCCAACCTGATCTCCGTG
GGCCTCGCGCTCTACGACCTGGACCAGAACAGCAAGGATCGGAGGCGCCT
TGAGGACAAGACGGTCGCACTGCTCAAGGCAAGGGCTGGCGCCGGCAGGA
CTAGCACGGGCATCAGCCCCACCCACAGTGTGGCGGCTGGCTCGGCCGCT
GAGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTCGACGGTGGGGAACGG
TGCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTGGAGCTAGCAATAGGA
GTTTGGTGAATGGGAGCGGGAACGGCGTTGGCATTGACATCAACAAGGAG
CTTAGGAGCCGACAGGCCGTCACTTCCACCCCCACGACCAGCAGCAGCAG
CCAGCCACAGGGCGGGGACACTGTGGCGGATATCGACGTTGAAGAGGTTC
TAGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTTGACCTCGTGGGTGAC
ATGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTGCAACTCCCCCGGATT
CGACTTGCCACTGAGATTGCTTGGCTACCGGCTCCACGACGGCGTCATTG
GTACGGCGGGCCTCATTTCGGCAATTTCGGCCGTGTACAAGGCTTACCCG
TCTGACATGGAACGTCTGCGGAAACACCGTCTCGTCCGCTTACTTGGTGC
GGCGCCCTGA

Synonyms

Publications