NO19G01950, NO19G01950 (gene) Nannochloropsis oceanica

Overview
NameNO19G01950
Unique NameNO19G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1015
Alignment locationchr19:571392..572406 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:571392..572406 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO19G01950 vs. NCBI_GenBank
Match: EWM23667.1 (hypothetical protein Naga_100030g15 [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 1.300e-33
Identity = 93/184 (50.54%), Postives = 109/184 (59.24%), Query Frame = 0 
Query:    1 MEAVDGLLAKLAADGDFQDDLHQPQVRLAMKHWTGENRLPPEQAEKLMGDFRVLAVLDKIKALQTACQRAGLPVPLDKVLRRETSLGMPLSAXXXXXXXXXXXXXXXXXXXXXXXXXQANEDKKVTATRRRKATAPATAPPPIAPTAPVQR-VQVPETLPGWVRLLSPLLIIGLVLVYAFASCL 184
            MEAV+GLLAKLA+D DFQDDL QPQVR+A+KHWT ENRLPP QAEKLM D+RVLAVL K+K+LQTACQRAG+ VPLD VLR+E SLG   S                          Q  +  K  + R                  P +  VQVPET+ GW  LLSPL+++GL L Y    CL
Sbjct:    1 MEAVNGLLAKLASDSDFQDDLRQPQVRVALKHWTNENRLPPLQAEKLMKDYRVLAVLQKLKSLQTACQRAGMAVPLDAVLRQEGSLGSLRST-------GARSLTSTSYSASVPEGEQPGKGAKTVSRRXXXXXXXXXXXXXXXXXXPARPIVQVPETVAGWAYLLSPLVMLGLGLAYFVYMCL 177
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BLAST of NO19G01950 vs. NCBI_GenBank
Match: CBJ29309.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 3.700e-9
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:    1 MEAVDGLLAKLAADGDFQDDLHQPQVRLAMKHWTGENRLPPEQAEKLMGD-FRVLAVLDKIKALQTACQRAGLPVPLDKVL 81
            ++ VDG+L  LA D   QDDL    V+ A++HWTG+NR+  + A++LM D +R+ +V  ++  LQ+ C++A + +PL  VL
Sbjct:   23 LDRVDGMLRALARDKLLQDDLRNTDVKRALEHWTGQNRMSQDHADELMEDNYRIQSVCSRMAELQSLCKQASIGLPLSHVL 103
The following BLAST results are available for this feature:
BLAST of NO19G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23667.11.300e-3350.54hypothetical protein Naga_100030g15 [Nannochlorops... [more]
CBJ29309.13.700e-940.74expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004537NSK004537Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01950.1NO19G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100030g15gene6760Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01950.1NO19G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01950 ID=NO19G01950|Name=NO19G01950|organism=Nannochloropsis oceanica|type=gene|length=1015bp
ATGGAGGCCGTGGACGGGCTCTTGGCCAAACTGGCCGCCGACGGAGACTT
CCAAGATGACTTGCACCAGCCGCAGGTCCGATTGgtacgtttcggtctat
cgttgtgcgtgttggtcctctcattttttgctgtgctagttcttgtctgt
gtggttgcgcggatttacgtatgtttgtttggcatggccctttcagcctg
gcgccccatctttccacaagcctttccctttcccgtacggtggtatcgct
actgattcgattactctgtggtgcgtatgtggggtcacattgcgcgtcaa
ccaatgatcttgcgttggaaaatagtccaatcctataaatctcatgagtg
attccgcttctgtggcatccaatcagcagtcctgatcttgtaccttcata
accatgtcgacagaggaatcgtcgctctgagctctgtgggccagacaatt
tcgacctttggcgcccccctaattctcatgatcacctttgtcctcatcaa
cgccaccccccctcccactacgatctgcctcttgacccccccaacagGCG
ATGAAGCACTGGACGGGCGAGAACCGTCTTCCCCCGGAACAGGCGGAGAA
GCTGATGGGAGACTTCCGGGTCCTCGCGGTCTTGGACAAGATCAAGGCTC
TCCAGACCGCCTGTCAACGGGCAGGCCTCCCAGTACCCTTGGACAAGGTC
TTGCGGAGGGAGACGTCTTTAGGCATGCCCCTCTCGGCGCCCCCAGCTTC
TTCTCCCTCCTCTTCCACTTCTACCTCGACCCCCTCTTCCTCAATTAAAG
CAACAACTCCCCGTCAAGCGAATGAGGACAAGAAGGTCACGGCTACACGT
CGACGAAAAGCCACTGCCCCTGCGACCGCACCCCCGCCGATTGCCCCGAC
GGCCCCGGTGCAACGCGTCCAAGTGCCCGAGACGCTGCCAGGATGGGTGC
GCCTTTTGAGCCCTCTCCTGATTATTGGGCTGGTCCTGGTGTACGCGTTT
GCTTCTTGTTTGTGA
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protein sequence of NO19G01950.1

>NO19G01950.1-protein ID=NO19G01950.1-protein|Name=NO19G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MEAVDGLLAKLAADGDFQDDLHQPQVRLAMKHWTGENRLPPEQAEKLMGD
FRVLAVLDKIKALQTACQRAGLPVPLDKVLRRETSLGMPLSAPPASSPSS
STSTSTPSSSIKATTPRQANEDKKVTATRRRKATAPATAPPPIAPTAPVQ
RVQVPETLPGWVRLLSPLLIIGLVLVYAFASCL*
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Synonyms
Publications