NO19G01950.1, NO19G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01950.1
Unique NameNO19G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length552
Alignment locationchr19:571392..572406 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:571392..572406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01950.1 vs.
Match: EWM23667.1 (hypothetical protein Naga_100030g15 [Nannochloropsis gaditana])

HSP 1 Score: 168.7 bits (426), Expect = 1.700e-38
Identity = 105/186 (56.45%), Postives = 126/186 (67.74%), Query Frame = 0 
Query:    1 MEAVDGLLAKLAADGDFQDDLHQPQVRLAMKHWTGENRLPPEQAEKLMGDFRVLAVLDKIKALQTACQRAGLPVPLDKVLRRETSLGMPLSAPPASSPSSSTSTSTPSSSIKATTPRQANEDKKVTATRRRKA---TAPATAPPPIAPTAPVQRVQVPETLPGWVRLLSPLLIIGLVLVYAFASCL 184
            MEAV+GLLAKLA+D DFQDDL QPQVR+A+KHWT ENRLPP QAEKLM D+RVLAVL K+K+LQTACQRAG+ VPLD VLR+E SLG   S    S  S+S S S P          Q  +  K  + RR +    +A A+A   +AP  P+  VQVPET+ GW  LLSPL+++GL L Y    CL
Sbjct:    1 MEAVNGLLAKLASDSDFQDDLRQPQVRVALKHWTNENRLPPLQAEKLMKDYRVLAVLQKLKSLQTACQRAGMAVPLDAVLRQEGSLGSLRSTGARSLTSTSYSASVPEG-------EQPGKGAKTVSRRRGRGAGESAGASAASSVAPARPI--VQVPETVAGWAYLLSPLVMLGLGLAYFVYMCL 177
The following BLAST results are available for this feature:
BLAST of NO19G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23667.11.700e-3856.45hypothetical protein Naga_100030g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01950NO19G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01950.1NO19G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01950.1.cds1NO19G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01950.1.cds2NO19G01950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01950.1 ID=NO19G01950.1|Name=NO19G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
ATGGAGGCCGTGGACGGGCTCTTGGCCAAACTGGCCGCCGACGGAGACTT
CCAAGATGACTTGCACCAGCCGCAGGTCCGATTGGCGATGAAGCACTGGA
CGGGCGAGAACCGTCTTCCCCCGGAACAGGCGGAGAAGCTGATGGGAGAC
TTCCGGGTCCTCGCGGTCTTGGACAAGATCAAGGCTCTCCAGACCGCCTG
TCAACGGGCAGGCCTCCCAGTACCCTTGGACAAGGTCTTGCGGAGGGAGA
CGTCTTTAGGCATGCCCCTCTCGGCGCCCCCAGCTTCTTCTCCCTCCTCT
TCCACTTCTACCTCGACCCCCTCTTCCTCAATTAAAGCAACAACTCCCCG
TCAAGCGAATGAGGACAAGAAGGTCACGGCTACACGTCGACGAAAAGCCA
CTGCCCCTGCGACCGCACCCCCGCCGATTGCCCCGACGGCCCCGGTGCAA
CGCGTCCAAGTGCCCGAGACGCTGCCAGGATGGGTGCGCCTTTTGAGCCC
TCTCCTGATTATTGGGCTGGTCCTGGTGTACGCGTTTGCTTCTTGTTTGT
GA
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protein sequence of NO19G01950.1

>NO19G01950.1-protein ID=NO19G01950.1-protein|Name=NO19G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MEAVDGLLAKLAADGDFQDDLHQPQVRLAMKHWTGENRLPPEQAEKLMGD
FRVLAVLDKIKALQTACQRAGLPVPLDKVLRRETSLGMPLSAPPASSPSS
STSTSTPSSSIKATTPRQANEDKKVTATRRRKATAPATAPPPIAPTAPVQ
RVQVPETLPGWVRLLSPLLIIGLVLVYAFASCL*
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mRNA from alignment at chr19:571392..572406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01950.1 ID=NO19G01950.1|Name=NO19G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1015bp|location=Sequence derived from alignment at chr19:571392..572406- (Nannochloropsis oceanica)
ATGGAGGCCGTGGACGGGCTCTTGGCCAAACTGGCCGCCGACGGAGACTT
CCAAGATGACTTGCACCAGCCGCAGGTCCGATTGGTACGTTTCGGTCTAT
CGTTGTGCGTGTTGGTCCTCTCATTTTTTGCTGTGCTAGTTCTTGTCTGT
GTGGTTGCGCGGATTTACGTATGTTTGTTTGGCATGGCCCTTTCAGCCTG
GCGCCCCATCTTTCCACAAGCCTTTCCCTTTCCCGTACGGTGGTATCGCT
ACTGATTCGATTACTCTGTGGTGCGTATGTGGGGTCACATTGCGCGTCAA
CCAATGATCTTGCGTTGGAAAATAGTCCAATCCTATAAATCTCATGAGTG
ATTCCGCTTCTGTGGCATCCAATCAGCAGTCCTGATCTTGTACCTTCATA
ACCATGTCGACAGAGGAATCGTCGCTCTGAGCTCTGTGGGCCAGACAATT
TCGACCTTTGGCGCCCCCCTAATTCTCATGATCACCTTTGTCCTCATCAA
CGCCACCCCCCCTCCCACTACGATCTGCCTCTTGACCCCCCCAACAGGCG
ATGAAGCACTGGACGGGCGAGAACCGTCTTCCCCCGGAACAGGCGGAGAA
GCTGATGGGAGACTTCCGGGTCCTCGCGGTCTTGGACAAGATCAAGGCTC
TCCAGACCGCCTGTCAACGGGCAGGCCTCCCAGTACCCTTGGACAAGGTC
TTGCGGAGGGAGACGTCTTTAGGCATGCCCCTCTCGGCGCCCCCAGCTTC
TTCTCCCTCCTCTTCCACTTCTACCTCGACCCCCTCTTCCTCAATTAAAG
CAACAACTCCCCGTCAAGCGAATGAGGACAAGAAGGTCACGGCTACACGT
CGACGAAAAGCCACTGCCCCTGCGACCGCACCCCCGCCGATTGCCCCGAC
GGCCCCGGTGCAACGCGTCCAAGTGCCCGAGACGCTGCCAGGATGGGTGC
GCCTTTTGAGCCCTCTCCTGATTATTGGGCTGGTCCTGGTGTACGCGTTT
GCTTCTTGTTTGTGA
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Coding sequence (CDS) from alignment at chr19:571392..572406-

>NO19G01950.1 ID=NO19G01950.1|Name=NO19G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr19:571392..572406- (Nannochloropsis oceanica)
ATGGAGGCCGTGGACGGGCTCTTGGCCAAACTGGCCGCCGACGGAGACTT
CCAAGATGACTTGCACCAGCCGCAGGTCCGATTGGCGATGAAGCACTGGA
CGGGCGAGAACCGTCTTCCCCCGGAACAGGCGGAGAAGCTGATGGGAGAC
TTCCGGGTCCTCGCGGTCTTGGACAAGATCAAGGCTCTCCAGACCGCCTG
TCAACGGGCAGGCCTCCCAGTACCCTTGGACAAGGTCTTGCGGAGGGAGA
CGTCTTTAGGCATGCCCCTCTCGGCGCCCCCAGCTTCTTCTCCCTCCTCT
TCCACTTCTACCTCGACCCCCTCTTCCTCAATTAAAGCAACAACTCCCCG
TCAAGCGAATGAGGACAAGAAGGTCACGGCTACACGTCGACGAAAAGCCA
CTGCCCCTGCGACCGCACCCCCGCCGATTGCCCCGACGGCCCCGGTGCAA
CGCGTCCAAGTGCCCGAGACGCTGCCAGGATGGGTGCGCCTTTTGAGCCC
TCTCCTGATTATTGGGCTGGTCCTGGTGTACGCGTTTGCTTCTTGTTTGT
GA
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Synonyms
Publications