NO19G01930, NO19G01930 (gene) Nannochloropsis oceanica

Overview
NameNO19G01930
Unique NameNO19G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length561
Alignment locationchr19:565552..566112 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:565552..566112 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO19G01930 vs. NCBI_GenBank
Match: EWM23701.1 (hypothetical protein Naga_100030g19 [Nannochloropsis gaditana])

HSP 1 Score: 185.7 bits (470), Expect = 1.400e-43
Identity = 108/170 (63.53%), Postives = 119/170 (70.00%), Query Frame = 0 
Query:   21 RSRRLGPLRAA--EGEDKP--EKRELDRLFEEAEKANQSSAFGDAVKTTVDRLPLPSLGGPKATSPEPDRPFRFPAYGFLFLSMMLGISFTGSLAELAGGKPLLGLMGTTAVVAIAGPGFVASFVVAVKRYKEXXXXXXXXXXXXXXXXXXXXRRALQGPVPLEALKKKE 187
            RS    P+ A+  E E  P  EKRELDRLFEE EKANQS+   +A+K+TV RLPLPS  G KA   EPDRPFRFPAYGFL +SM+LGISFTGSL ELAGGKPLLG   T AV+A AGPGFVASFVVAVKRY E                    +RALQGPVPLEALK+KE
Sbjct:   52 RSGNFAPIYASADESESGPATEKRELDRLFEEVEKANQSNGLKEAIKSTVSRLPLPS-AGSKAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGGKPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARLEEEERQDELARQRALQGPVPLEALKEKE 220
The following BLAST results are available for this feature:
BLAST of NO19G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23701.11.400e-4363.53hypothetical protein Naga_100030g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004533NSK004533Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01930.1NO19G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100030g19gene6763Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01930.1NO19G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01930 ID=NO19G01930|Name=NO19G01930|organism=Nannochloropsis oceanica|type=gene|length=561bp
ATGTCGAGGAGCAGCCACTGCGGGACCAAGACCAGCAGCAGCTGCATCAG
CTACAGCAGCAGGAGTAGGAGGCTAGGACCGCTGCGTGCTGCTGAAGGCG
AGGACAAGCCGGAGAAGCGGGAGCTGGACCGTCTGTTTGAAGAGGCAGAA
AAGGCGAATCAAAGCAGTGCGTTCGGGGATGCCGTAAAAACCACCGTGGA
CCGGCTGCCGCTGCCAAGTTTGGGGGGTCCTAAAGCAACCAGCCCAGAGC
CCGACCGGCCCTTCCGCTTTCCGGCCTACGGCTTCCTCTTCTTATCCATG
ATGCTGGGAATCAGCTTCACGGGATCGCTCGCGGAGCTCGCGGGTGGCAA
ACCACTTTTGGGGCTGATGGGCACAACCGCTGTGGTGGCGATTGCGGGTC
CTGGCTTTGTTGCCTCGTTCGTGGTGGCAGTGAAGCGTTACAAGGAAGAG
GAGAAAGAGGATAATGCTCGGTTGGAAGAAGAGGAGCGTCAGGAGGCGCA
AGCTCGGCGACGGGCGCTGCAGGGACCTGTGCCGCTAGAGGCCTTGAAGA
AGAAGGAGTAA
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protein sequence of NO19G01930.1

>NO19G01930.1-protein ID=NO19G01930.1-protein|Name=NO19G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSRSSHCGTKTSSSCISYSSRSRRLGPLRAAEGEDKPEKRELDRLFEEAE
KANQSSAFGDAVKTTVDRLPLPSLGGPKATSPEPDRPFRFPAYGFLFLSM
MLGISFTGSLAELAGGKPLLGLMGTTAVVAIAGPGFVASFVVAVKRYKEE
EKEDNARLEEEERQEAQARRRALQGPVPLEALKKKE*
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Synonyms
Publications