NO19G01930.1, NO19G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01930.1
Unique NameNO19G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length561
Alignment locationchr19:565552..566112 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:565552..566112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01930.1 vs.
Match: EWM23701.1 (hypothetical protein Naga_100030g19 [Nannochloropsis gaditana])

HSP 1 Score: 214.9 bits (546), Expect = 2.100e-52
Identity = 123/170 (72.35%), Postives = 137/170 (80.59%), Query Frame = 0 
Query:   21 RSRRLGPLRAA--EGEDKP--EKRELDRLFEEAEKANQSSAFGDAVKTTVDRLPLPSLGGPKATSPEPDRPFRFPAYGFLFLSMMLGISFTGSLAELAGGKPLLGLMGTTAVVAIAGPGFVASFVVAVKRYKEEEKEDNARLEEEERQEAQARRRALQGPVPLEALKKKE 187
            RS    P+ A+  E E  P  EKRELDRLFEE EKANQS+   +A+K+TV RLPLPS G  KA   EPDRPFRFPAYGFL +SM+LGISFTGSL ELAGGKPLLG   T AV+A AGPGFVASFVVAVKRY EE++EDNARLEEEERQ+  AR+RALQGPVPLEALK+KE
Sbjct:   52 RSGNFAPIYASADESESGPATEKRELDRLFEEVEKANQSNGLKEAIKSTVSRLPLPSAGS-KAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGGKPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARLEEEERQDELARQRALQGPVPLEALKEKE 220
The following BLAST results are available for this feature:
BLAST of NO19G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23701.12.100e-5272.35hypothetical protein Naga_100030g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01930NO19G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01930.1NO19G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01930.1.cds1NO19G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01930.1 ID=NO19G01930.1|Name=NO19G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
ATGTCGAGGAGCAGCCACTGCGGGACCAAGACCAGCAGCAGCTGCATCAG
CTACAGCAGCAGGAGTAGGAGGCTAGGACCGCTGCGTGCTGCTGAAGGCG
AGGACAAGCCGGAGAAGCGGGAGCTGGACCGTCTGTTTGAAGAGGCAGAA
AAGGCGAATCAAAGCAGTGCGTTCGGGGATGCCGTAAAAACCACCGTGGA
CCGGCTGCCGCTGCCAAGTTTGGGGGGTCCTAAAGCAACCAGCCCAGAGC
CCGACCGGCCCTTCCGCTTTCCGGCCTACGGCTTCCTCTTCTTATCCATG
ATGCTGGGAATCAGCTTCACGGGATCGCTCGCGGAGCTCGCGGGTGGCAA
ACCACTTTTGGGGCTGATGGGCACAACCGCTGTGGTGGCGATTGCGGGTC
CTGGCTTTGTTGCCTCGTTCGTGGTGGCAGTGAAGCGTTACAAGGAAGAG
GAGAAAGAGGATAATGCTCGGTTGGAAGAAGAGGAGCGTCAGGAGGCGCA
AGCTCGGCGACGGGCGCTGCAGGGACCTGTGCCGCTAGAGGCCTTGAAGA
AGAAGGAGTAA
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protein sequence of NO19G01930.1

>NO19G01930.1-protein ID=NO19G01930.1-protein|Name=NO19G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSRSSHCGTKTSSSCISYSSRSRRLGPLRAAEGEDKPEKRELDRLFEEAE
KANQSSAFGDAVKTTVDRLPLPSLGGPKATSPEPDRPFRFPAYGFLFLSM
MLGISFTGSLAELAGGKPLLGLMGTTAVVAIAGPGFVASFVVAVKRYKEE
EKEDNARLEEEERQEAQARRRALQGPVPLEALKKKE*
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mRNA from alignment at chr19:565552..566112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01930.1 ID=NO19G01930.1|Name=NO19G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=561bp|location=Sequence derived from alignment at chr19:565552..566112+ (Nannochloropsis oceanica)
ATGTCGAGGAGCAGCCACTGCGGGACCAAGACCAGCAGCAGCTGCATCAG
CTACAGCAGCAGGAGTAGGAGGCTAGGACCGCTGCGTGCTGCTGAAGGCG
AGGACAAGCCGGAGAAGCGGGAGCTGGACCGTCTGTTTGAAGAGGCAGAA
AAGGCGAATCAAAGCAGTGCGTTCGGGGATGCCGTAAAAACCACCGTGGA
CCGGCTGCCGCTGCCAAGTTTGGGGGGTCCTAAAGCAACCAGCCCAGAGC
CCGACCGGCCCTTCCGCTTTCCGGCCTACGGCTTCCTCTTCTTATCCATG
ATGCTGGGAATCAGCTTCACGGGATCGCTCGCGGAGCTCGCGGGTGGCAA
ACCACTTTTGGGGCTGATGGGCACAACCGCTGTGGTGGCGATTGCGGGTC
CTGGCTTTGTTGCCTCGTTCGTGGTGGCAGTGAAGCGTTACAAGGAAGAG
GAGAAAGAGGATAATGCTCGGTTGGAAGAAGAGGAGCGTCAGGAGGCGCA
AGCTCGGCGACGGGCGCTGCAGGGACCTGTGCCGCTAGAGGCCTTGAAGA
AGAAGGAGTAA
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Coding sequence (CDS) from alignment at chr19:565552..566112+

>NO19G01930.1 ID=NO19G01930.1|Name=NO19G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr19:565552..566112+ (Nannochloropsis oceanica)
ATGTCGAGGAGCAGCCACTGCGGGACCAAGACCAGCAGCAGCTGCATCAG
CTACAGCAGCAGGAGTAGGAGGCTAGGACCGCTGCGTGCTGCTGAAGGCG
AGGACAAGCCGGAGAAGCGGGAGCTGGACCGTCTGTTTGAAGAGGCAGAA
AAGGCGAATCAAAGCAGTGCGTTCGGGGATGCCGTAAAAACCACCGTGGA
CCGGCTGCCGCTGCCAAGTTTGGGGGGTCCTAAAGCAACCAGCCCAGAGC
CCGACCGGCCCTTCCGCTTTCCGGCCTACGGCTTCCTCTTCTTATCCATG
ATGCTGGGAATCAGCTTCACGGGATCGCTCGCGGAGCTCGCGGGTGGCAA
ACCACTTTTGGGGCTGATGGGCACAACCGCTGTGGTGGCGATTGCGGGTC
CTGGCTTTGTTGCCTCGTTCGTGGTGGCAGTGAAGCGTTACAAGGAAGAG
GAGAAAGAGGATAATGCTCGGTTGGAAGAAGAGGAGCGTCAGGAGGCGCA
AGCTCGGCGACGGGCGCTGCAGGGACCTGTGCCGCTAGAGGCCTTGAAGA
AGAAGGAGTAA
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Synonyms
Publications