NO19G01900, NO19G01900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G01900 vs. NCBI_GenBank
Match: EWM23664.1 (PUB domain protein [Nannochloropsis gaditana]) HSP 1 Score: 375.9 bits (964), Expect = 1.600e-100 Identity = 233/419 (55.61%), Postives = 289/419 (68.97%), Query Frame = 0 Query: 1 MEYLKSALGMKQGKGHVSG----SMAPSIPPAASPTAR-------TFDVTFGPTDTQLGMTITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGNPVGNYESLEVALCAMERPVIFSFRCPADSICVPD--RMTSPSSNRSNGSDADEQRRRTMLAAAEERSKAYERKMGKAGIGNTRG-NKKSGEGLEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAXXRIELSAPVSSTASARPSIVPPVPPSSSLPHGGPS--PSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILNDTED 404 M YLK ALG+K+ KG+V G + PS P ++PT T+D F D LGMTI + G PVV S+V+GGAA++ GV GD V+SVDGNPV +YESLEVALCAMERPV FSF S V R T P S+ S D +RRR +L AAEERS+A++RK+ KAG GN RG +KKSGEGL++F A DD+ T+A V IK+FEA Q AALGYNPYES SMSRAQA RIEL+ P S +++R S + P +S PH PS P+S+S + S PF+ PLSQEE ESPEAF+A EEAD AMA MLD+PL +WR A ST++ IL NVL P QEK+RRVRLQN F +KV AV G++D+L AAGF Y ED+ETFL+LP PA EVPL+ RV+Y+R++Q+L DT+D Sbjct: 1 MNYLKGALGLKKDKGNVLGNEVNTSRPSGPSNSAPTRETRSGSFSTYDAVFDGNDALLGMTIACSQTGIPVVGSLVSGGAASRKGVHIGDIVMSVDGNPVTSYESLEVALCAMERPVTFSFHRSGKSDLVQPVARPTLPPSDES----GDVERRRRILTAAEERSRAWDRKVQKAG-GNHRGASKKSGEGLDRFGANDDEATKAQVAQIKKFEAAQTAALGYNPYESHSMSRAQALARIELAGPTPSGSNSRTS-AAALSPLNSQPHPPPSWTPTSLSPSLSGDRR---PFVAPLSQEELESPEAFQAGEEADSAMALMLDRPLPAWRTAASTVLTILGNVLADPAQEKFRRVRLQNAAFQSKVVAVPGAVDMLHAAGFCYTMEDQETFLSLPGPALEVPLRARVIYYRIQQVLEDTQD 410
BLAST of NO19G01900 vs. NCBI_GenBank
Match: CBJ30220.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.6 bits (205), Expect = 1.600e-12 Identity = 103/392 (26.28%), Postives = 165/392 (42.09%), Query Frame = 0 Query: 44 DTQLGMTITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGN-PVGNYESLEVALCAMERPVIFSF------------------------RCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEERSKAYERKMGKAGIGNTRGNKKSGEG---LEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAXXRIELSAPVSSTASARPSIVPPVPPSSSLPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKAN---EEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILNDTEDS 405 + LG++++ G V V GGAA + GVR D + ++DGN +E L + A+ RPV+ F R + D + P ++A +RR L AAE R+K + +++ K G KSG G +F + TR VE K+ EA A+++GYNPYE++ M A R +S S A A P+ G +EE+ EA A+ E + A+ +L+Q AV+T+++++ N+ +K++R+RL N F +KV + G L+++ AAGF ++ +E L P VPL+ V +L Q +DS Sbjct: 2 EQHLGISLSPGPNGESRVTGVSNGGAAAKAGVRVNDTIAAIDGNASPAAHEDLVDVVRAIGRPVVIGFHRSGGGGKEAKGAGATAQEPGPFQRAQDAARRKMDEIKGPPQPPPMTAEAKAERREAALKAAESRTKDWNKRLNK---GRQASQTKSGTGGVTENQFEDSGNAETRRMVELAKQQEARTASSMGYNPYEARLMGNTAA--RAAISGAGDSGAGA------PLXXXXXXXXXXXXXXXXXXXXXXXNLG--------EKEEWIGEEAAMADAVAAEIEGALGAVLEQEPGVSLTAVTTMLKMMKNMTAKSSDDKFKRIRLGNANFNSKVGGIDGGLEVMTAAGFSLQTDGDEPVLQ-HGPCDPVPLRLTVAIRKLAQAEAMLKDS 373
BLAST of NO19G01900 vs. NCBI_GenBank
Match: EJK63297.1 (hypothetical protein THAOC_16049 [Thalassiosira oceanica]) HSP 1 Score: 65.5 bits (158), Expect = 4.500e-7 Identity = 96/346 (27.75%), Postives = 146/346 (42.20%), Query Frame = 0 Query: 47 LGMTITFDKMGR--PVVESVVAGGAANQNGVREGDWVLSVDGNPVGN--YESLEVALCAMERPVIFSFRCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEERS---KAYERKMGKAGIGNTRGNKKSGEGLEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAXXRIELSAPVSSTASARPSIVPPVPPSSSLPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQE-------KYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPS 379 LGM + K + ++ V+ G A G++ GD V N Y+ A + RP+ F R SI + + S + +DA E RR+ ++AAAE R+ KA ++ + K + R L + + + TR V +K+ E AA LGY+PY +Q+M+ QA +A V+ T+ P + L G +P S S P +PL E ES F + + + L I+R L+N QE K+RRVRL NP +SA G+++L++ GF D ET+LA PS Sbjct: 189 LGMEVEKRKNAQKTAIIAKVMHGSQAELAGLKRGDIVCHPQSNGTEEIMYDQFIAAAKSGRRPLRFDVRRIESSI-----LGNSSGSGKVSADA-ESRRQAVIAAAEARNNKHKALQKPIPK--LSTDRKQANGAVSLHRGEDSEAEETRRAVAKVKQAEKLDAAKLGYDPYTAQAMTSGQAR-----TAQVAMTSGEINVDNAP----AKLSGGSSAPDSAPGIVSKPS-------VPLPAEFEESFGLFVTSNSDHAGVIKSLG------------IMRKLINNAVTKGQEGDEDTSSKFRRVRLSNPKINESISAKAGAVELMILFGFQLSESDGETYLAFPS 498 The following BLAST results are available for this feature:
BLAST of NO19G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G01900 ID=NO19G01900|Name=NO19G01900|organism=Nannochloropsis oceanica|type=gene|length=1388bpback to top protein sequence of NO19G01900.1 >NO19G01900.1-protein ID=NO19G01900.1-protein|Name=NO19G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bpback to top Synonyms
Publications
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