NO19G01900, NO19G01900 (gene) Nannochloropsis oceanica

Overview
NameNO19G01900
Unique NameNO19G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1388
Alignment locationchr19:561773..563160 +

Link to JBrowse

Properties
Property NameValue
DescriptionPUB domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:561773..563160 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036339PUB-like_dom_sf
IPR036034PDZ_sf
IPR001478PDZ
IPR018997PUB_domain
Homology
BLAST of NO19G01900 vs. NCBI_GenBank
Match: EWM23664.1 (PUB domain protein [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 1.600e-100
Identity = 233/419 (55.61%), Postives = 289/419 (68.97%), Query Frame = 0
Query:    1 MEYLKSALGMKQGKGHVSG----SMAPSIPPAASPTAR-------TFDVTFGPTDTQLGMTITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGNPVGNYESLEVALCAMERPVIFSFRCPADSICVPD--RMTSPSSNRSNGSDADEQRRRTMLAAAEERSKAYERKMGKAGIGNTRG-NKKSGEGLEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAXXRIELSAPVSSTASARPSIVPPVPPSSSLPHGGPS--PSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILNDTED 404
            M YLK ALG+K+ KG+V G    +  PS P  ++PT         T+D  F   D  LGMTI   + G PVV S+V+GGAA++ GV  GD V+SVDGNPV +YESLEVALCAMERPV FSF     S  V    R T P S+ S     D +RRR +L AAEERS+A++RK+ KAG GN RG +KKSGEGL++F A DD+ T+A V  IK+FEA Q AALGYNPYES SMSRAQA  RIEL+ P  S +++R S    + P +S PH  PS  P+S+S + S       PF+ PLSQEE ESPEAF+A EEAD AMA MLD+PL +WR A ST++ IL NVL  P QEK+RRVRLQN  F +KV AV G++D+L AAGF Y  ED+ETFL+LP PA EVPL+ RV+Y+R++Q+L DT+D
Sbjct:    1 MNYLKGALGLKKDKGNVLGNEVNTSRPSGPSNSAPTRETRSGSFSTYDAVFDGNDALLGMTIACSQTGIPVVGSLVSGGAASRKGVHIGDIVMSVDGNPVTSYESLEVALCAMERPVTFSFHRSGKSDLVQPVARPTLPPSDES----GDVERRRRILTAAEERSRAWDRKVQKAG-GNHRGASKKSGEGLDRFGANDDEATKAQVAQIKKFEAAQTAALGYNPYESHSMSRAQALARIELAGPTPSGSNSRTS-AAALSPLNSQPHPPPSWTPTSLSPSLSGDRR---PFVAPLSQEELESPEAFQAGEEADSAMALMLDRPLPAWRTAASTVLTILGNVLADPAQEKFRRVRLQNAAFQSKVVAVPGAVDMLHAAGFCYTMEDQETFLSLPGPALEVPLRARVIYYRIQQVLEDTQD 410          
BLAST of NO19G01900 vs. NCBI_GenBank
Match: CBJ30220.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.6 bits (205), Expect = 1.600e-12
Identity = 103/392 (26.28%), Postives = 165/392 (42.09%), Query Frame = 0
Query:   44 DTQLGMTITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGN-PVGNYESLEVALCAMERPVIFSF------------------------RCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEERSKAYERKMGKAGIGNTRGNKKSGEG---LEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAXXRIELSAPVSSTASARPSIVPPVPPSSSLPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKAN---EEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILNDTEDS 405
            +  LG++++    G   V  V  GGAA + GVR  D + ++DGN     +E L   + A+ RPV+  F                        R    +    D +  P       ++A  +RR   L AAE R+K + +++ K   G      KSG G     +F    +  TR  VE  K+ EA  A+++GYNPYE++ M    A  R  +S    S A A      P+                         G         +EE+   EA  A+    E + A+  +L+Q       AV+T+++++ N+      +K++R+RL N  F +KV  + G L+++ AAGF   ++ +E  L    P   VPL+  V   +L Q     +DS
Sbjct:    2 EQHLGISLSPGPNGESRVTGVSNGGAAAKAGVRVNDTIAAIDGNASPAAHEDLVDVVRAIGRPVVIGFHRSGGGGKEAKGAGATAQEPGPFQRAQDAARRKMDEIKGPPQPPPMTAEAKAERREAALKAAESRTKDWNKRLNK---GRQASQTKSGTGGVTENQFEDSGNAETRRMVELAKQQEARTASSMGYNPYEARLMGNTAA--RAAISGAGDSGAGA------PLXXXXXXXXXXXXXXXXXXXXXXXNLG--------EKEEWIGEEAAMADAVAAEIEGALGAVLEQEPGVSLTAVTTMLKMMKNMTAKSSDDKFKRIRLGNANFNSKVGGIDGGLEVMTAAGFSLQTDGDEPVLQ-HGPCDPVPLRLTVAIRKLAQAEAMLKDS 373          
BLAST of NO19G01900 vs. NCBI_GenBank
Match: EJK63297.1 (hypothetical protein THAOC_16049 [Thalassiosira oceanica])

HSP 1 Score: 65.5 bits (158), Expect = 4.500e-7
Identity = 96/346 (27.75%), Postives = 146/346 (42.20%), Query Frame = 0
Query:   47 LGMTITFDKMGR--PVVESVVAGGAANQNGVREGDWVLSVDGNPVGN--YESLEVALCAMERPVIFSFRCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEERS---KAYERKMGKAGIGNTRGNKKSGEGLEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAXXRIELSAPVSSTASARPSIVPPVPPSSSLPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQE-------KYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPS 379
            LGM +   K  +   ++  V+ G  A   G++ GD V     N      Y+    A  +  RP+ F  R    SI     + + S +    +DA E RR+ ++AAAE R+   KA ++ + K  +   R        L +    + + TR  V  +K+ E   AA LGY+PY +Q+M+  QA      +A V+ T+        P    + L  G  +P S     S P        +PL  E  ES   F  +      + + L             I+R L+N      QE       K+RRVRL NP     +SA  G+++L++  GF     D ET+LA PS
Sbjct:  189 LGMEVEKRKNAQKTAIIAKVMHGSQAELAGLKRGDIVCHPQSNGTEEIMYDQFIAAAKSGRRPLRFDVRRIESSI-----LGNSSGSGKVSADA-ESRRQAVIAAAEARNNKHKALQKPIPK--LSTDRKQANGAVSLHRGEDSEAEETRRAVAKVKQAEKLDAAKLGYDPYTAQAMTSGQAR-----TAQVAMTSGEINVDNAP----AKLSGGSSAPDSAPGIVSKPS-------VPLPAEFEESFGLFVTSNSDHAGVIKSLG------------IMRKLINNAVTKGQEGDEDTSSKFRRVRLSNPKINESISAKAGAVELMILFGFQLSESDGETYLAFPS 498          
The following BLAST results are available for this feature:
BLAST of NO19G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23664.11.600e-10055.61PUB domain protein [Nannochloropsis gaditana][more]
CBJ30220.11.600e-1226.28conserved unknown protein [Ectocarpus siliculosus][more]
EJK63297.14.500e-727.75hypothetical protein THAOC_16049 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004530NSK004530Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01900.1NO19G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599279gene_7592Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g21gene6765Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01900.1NO19G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01900 ID=NO19G01900|Name=NO19G01900|organism=Nannochloropsis oceanica|type=gene|length=1388bp
ATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGGAAAGGCCATGT
AAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATCGCCCACAGCAA
GAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGCTGGGTATGACT
ATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGTGTAGTCGCAGG
GGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTGGGTACTAAGCG
TTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGGTGGCCCTGTGC
GCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCAGCAGACTCGAT
TTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCGGAGCAATGGGT
CCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGGCTGCCGAGGAG
CGTAGTAAGGCATATGAGCGGAAGATGGGCAAAGCGGGAATCGGTAATAC
GAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTTCGCGGCCAAGG
ACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGCGGTTCGAAGCT
GAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCTCAGAGCATGTC
GCGAGgtaaaacgaagcatcttgacgacagtgctggggtctttgagggtg
agggaggtccacacgcttcgacgtcaaaatcattattcatgtcaccataa
ttccacacgaggacccttaccttcaacctcacaccaaattatcacgcaca
gCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTGTCTTCCACTGC
GTCGGCACGACCGTCTATAGTGCCACCGGTGCCCCCATCATCGTCCTTGC
CACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTTCCTCCTCACCC
GAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAGGAGGAGTACGA
GAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGTGGCAATGGCGA
GGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCGTCTCTACCATT
ATCCGTATCCTGGTCAACGTCTTGGAACACCCTTTCCAGGAAAAGTACAG
GAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGTATCCGCCGTTA
CTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGTATGTCTCAGAG
GATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCCGAGGTGCCATT
GCAGACCCGCGTCTTGTACCACCGACTGAAACAAATCTTGAATGATACGG
AGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGA
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protein sequence of NO19G01900.1

>NO19G01900.1-protein ID=NO19G01900.1-protein|Name=NO19G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MEYLKSALGMKQGKGHVSGSMAPSIPPAASPTARTFDVTFGPTDTQLGMT
ITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGNPVGNYESLEVALC
AMERPVIFSFRCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEE
RSKAYERKMGKAGIGNTRGNKKSGEGLEKFAAKDDKWTRAHVEHIKRFEA
EQAAALGYNPYESQSMSRAQAQARIELSAPVSSTASARPSIVPPVPPSSS
LPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAM
ARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSA
VTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILND
TEDSRLKMVSAKS*
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Synonyms
Publications