NO19G01900.1, NO19G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01900.1
Unique NameNO19G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr19:561773..563160 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:561773..563160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01900.1 vs.
Match: EWM23664.1 (PUB domain protein [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 9.200e-101
Identity = 234/419 (55.85%), Postives = 290/419 (69.21%), Query Frame = 0 
Query:    1 MEYLKSALGMKQGKGHVSGSMA----PSIPPAASPTART-------FDVTFGPTDTQLGMTITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGNPVGNYESLEVALCAMERPVIFSFRCPADSICVPD--RMTSPSSNRSNGSDADEQRRRTMLAAAEERSKAYERKMGKAGIGNTRG-NKKSGEGLEKFAAKDDKWTRAHVEHIKRFEAEQAAALGYNPYESQSMSRAQAQARIELSAPVSSTASARPSIVPPVPPSSSLPHGGPS--PSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAMARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSAVTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILNDTED 404
            M YLK ALG+K+ KG+V G+      PS P  ++PT  T       +D  F   D  LGMTI   + G PVV S+V+GGAA++ GV  GD V+SVDGNPV +YESLEVALCAMERPV FSF     S  V    R T P S+ S     D +RRR +L AAEERS+A++RK+ KAG GN RG +KKSGEGL++F A DD+ T+A V  IK+FEA Q AALGYNPYES SMSRAQA ARIEL+ P  S +++R S    + P +S PH  PS  P+S+S + S       PF+ PLSQEE ESPEAF+A EEAD AMA MLD+PL +WR A ST++ IL NVL  P QEK+RRVRLQN  F +KV AV G++D+L AAGF Y  ED+ETFL+LP PA EVPL+ RV+Y+R++Q+L DT+D
Sbjct:    1 MNYLKGALGLKKDKGNVLGNEVNTSRPSGPSNSAPTRETRSGSFSTYDAVFDGNDALLGMTIACSQTGIPVVGSLVSGGAASRKGVHIGDIVMSVDGNPVTSYESLEVALCAMERPVTFSFHRSGKSDLVQPVARPTLPPSDESG----DVERRRRILTAAEERSRAWDRKVQKAG-GNHRGASKKSGEGLDRFGANDDEATKAQVAQIKKFEAAQTAALGYNPYESHSMSRAQALARIELAGPTPSGSNSRTSAAA-LSPLNSQPHPPPSWTPTSLSPSLSGDRR---PFVAPLSQEELESPEAFQAGEEADSAMALMLDRPLPAWRTAASTVLTILGNVLADPAQEKFRRVRLQNAAFQSKVVAVPGAVDMLHAAGFCYTMEDQETFLSLPGPALEVPLRARVIYYRIQQVLEDTQD 410
The following BLAST results are available for this feature:
BLAST of NO19G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23664.19.200e-10155.85PUB domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01900NO19G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01900.1NO19G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01900.1.cds1NO19G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01900.1.cds2NO19G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01900.1 ID=NO19G01900.1|Name=NO19G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGGAAAGGCCATGT
AAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATCGCCCACAGCAA
GAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGCTGGGTATGACT
ATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGTGTAGTCGCAGG
GGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTGGGTACTAAGCG
TTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGGTGGCCCTGTGC
GCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCAGCAGACTCGAT
TTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCGGAGCAATGGGT
CCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGGCTGCCGAGGAG
CGTAGTAAGGCATATGAGCGGAAGATGGGCAAAGCGGGAATCGGTAATAC
GAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTTCGCGGCCAAGG
ACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGCGGTTCGAAGCT
GAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCTCAGAGCATGTC
GCGAGCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTGTCTTCCA
CTGCGTCGGCACGACCGTCTATAGTGCCACCGGTGCCCCCATCATCGTCC
TTGCCACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTTCCTCCTC
ACCCGAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAGGAGGAGT
ACGAGAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGTGGCAATG
GCGAGGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCGTCTCTAC
CATTATCCGTATCCTGGTCAACGTCTTGGAACACCCTTTCCAGGAAAAGT
ACAGGAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGTATCCGCC
GTTACTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGTATGTCTC
AGAGGATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCCGAGGTGC
CATTGCAGACCCGCGTCTTGTACCACCGACTGAAACAAATCTTGAATGAT
ACGGAGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGA
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protein sequence of NO19G01900.1

>NO19G01900.1-protein ID=NO19G01900.1-protein|Name=NO19G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MEYLKSALGMKQGKGHVSGSMAPSIPPAASPTARTFDVTFGPTDTQLGMT
ITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGNPVGNYESLEVALC
AMERPVIFSFRCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEE
RSKAYERKMGKAGIGNTRGNKKSGEGLEKFAAKDDKWTRAHVEHIKRFEA
EQAAALGYNPYESQSMSRAQAQARIELSAPVSSTASARPSIVPPVPPSSS
LPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAM
ARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSA
VTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILND
TEDSRLKMVSAKS*
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mRNA from alignment at chr19:561773..563160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01900.1 ID=NO19G01900.1|Name=NO19G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at chr19:561773..563160+ (Nannochloropsis oceanica)
ATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGGAAAGGCCATGT
AAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATCGCCCACAGCAA
GAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGCTGGGTATGACT
ATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGTGTAGTCGCAGG
GGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTGGGTACTAAGCG
TTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGGTGGCCCTGTGC
GCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCAGCAGACTCGAT
TTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCGGAGCAATGGGT
CCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGGCTGCCGAGGAG
CGTAGTAAGGCATATGAGCGGAAGATGGGCAAAGCGGGAATCGGTAATAC
GAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTTCGCGGCCAAGG
ACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGCGGTTCGAAGCT
GAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCTCAGAGCATGTC
GCGAGGTAAAACGAAGCATCTTGACGACAGTGCTGGGGTCTTTGAGGGTG
AGGGAGGTCCACACGCTTCGACGTCAAAATCATTATTCATGTCACCATAA
TTCCACACGAGGACCCTTACCTTCAACCTCACACCAAATTATCACGCACA
GCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTGTCTTCCACTGC
GTCGGCACGACCGTCTATAGTGCCACCGGTGCCCCCATCATCGTCCTTGC
CACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTTCCTCCTCACCC
GAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAGGAGGAGTACGA
GAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGTGGCAATGGCGA
GGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCGTCTCTACCATT
ATCCGTATCCTGGTCAACGTCTTGGAACACCCTTTCCAGGAAAAGTACAG
GAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGTATCCGCCGTTA
CTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGTATGTCTCAGAG
GATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCCGAGGTGCCATT
GCAGACCCGCGTCTTGTACCACCGACTGAAACAAATCTTGAATGATACGG
AGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGA
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Coding sequence (CDS) from alignment at chr19:561773..563160+

>NO19G01900.1 ID=NO19G01900.1|Name=NO19G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr19:561773..563160+ (Nannochloropsis oceanica)
ATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGGAAAGGCCATGT
AAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATCGCCCACAGCAA
GAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGCTGGGTATGACT
ATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGTGTAGTCGCAGG
GGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTGGGTACTAAGCG
TTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGGTGGCCCTGTGC
GCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCAGCAGACTCGAT
TTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCGGAGCAATGGGT
CCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGGCTGCCGAGGAG
CGTAGTAAGGCATATGAGCGGAAGATGGGCAAAGCGGGAATCGGTAATAC
GAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTTCGCGGCCAAGG
ACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGCGGTTCGAAGCT
GAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCTCAGAGCATGTC
GCGAGCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTGTCTTCCA
CTGCGTCGGCACGACCGTCTATAGTGCCACCGGTGCCCCCATCATCGTCC
TTGCCACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTTCCTCCTC
ACCCGAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAGGAGGAGT
ACGAGAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGTGGCAATG
GCGAGGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCGTCTCTAC
CATTATCCGTATCCTGGTCAACGTCTTGGAACACCCTTTCCAGGAAAAGT
ACAGGAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGTATCCGCC
GTTACTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGTATGTCTC
AGAGGATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCCGAGGTGC
CATTGCAGACCCGCGTCTTGTACCACCGACTGAAACAAATCTTGAATGAT
ACGGAGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGA
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Synonyms
Publications