NO19G01880, NO19G01880 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01880
Unique Name	NO19G01880
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4796
Alignment location	chr19:556655..561450 -

Link to JBrowse

Properties


Property Name	Value
Description	Citrate synthase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:556655..561450 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0016740	transferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036969	Citrate_synthase_sf
IPR002020	Citrate_synthase-like

Vocabulary: **Biological Process**
Term	Definition
GO:0006091	generation of precursor metabolites and energy

Homology

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_007217210.1 (citrate synthase, glyoxysomal [Prunus persica] >ONI17609.1 hypothetical protein PRUPE_3G169400 [Prunus persica])

HSP 1 Score: 460.7 bits (1184), Expect = 5.500e-126
Identity = 240/441 (54.42%), Postives = 312/441 (70.75%), Query Frame = 0

Query:   12 VILEYRGQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVP 445
            ++ E  G+R+++ V + G I+A DLK  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ S++LEVA+LL+YG LPS  QL  +   + Q  +A+   ++ ++Q I HDAH M  +VS ++A S    DANPAL GQDVYKS+ +R+ Q+  +LG  PT+AA   LR  G  P +          P N  +Y E+FL +L  LG       +P+PR+ R +D++ ++HA+HE+NCSTAA RHL SSG DV+T +AGATGALYGPLHGGA EAVL+ML EIGTVE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y+P
Sbjct:   59 IVDERTGKRYQVQVSEEGTIKAADLKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAERSTFLEVAYLLMYGNLPSESQLADWEFAISQ-HSAVPQGILDIIQAIPHDAHPMGVLVSAMSALSVFHPDANPALRGQDVYKSKQVRDKQIARILGKAPTIAAAAYLRLAG-RPAVL---------PANNLSYAENFLYMLDSLGN---RSYKPNPRLARVVDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWRESLDDP--DTKIMRPQQVYTGNWLRHYIP 483

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_004951381.1 (citrate synthase 3, peroxisomal [Setaria italica])

HSP 1 Score: 460.3 bits (1183), Expect = 7.200e-126
Identity = 239/450 (53.11%), Postives = 316/450 (70.22%), Query Frame = 0

Query:    8 ADQLVILEYR-GQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            A  L +++ R G+RH + V ++G +RA D K  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ SS++EVA+LL+YG LP+  QL  +   + Q  +A+   L+ ++Q++ HDAH M  + S ++  S    DANPAL GQD+YKS+ +R+ Q++ +LG  PT+AA   LR  G  P +          P+N  +Y E+FL +L  LG       +P+PR+ RALDI+ ++HA+HE+NCSTAAVRHL SSG DVFT ++G  GALYGPLHGGA EAVL+ML EIG+VE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YF+ RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y P+  R
Sbjct:   42 AGALTVVDGRTGKRHEVKVSEDGTVRATDFKKITAVKDDKGLKIYDPGYLNTAPVRSTICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGNLPTQSQLASWEFAISQ-HSAVPQGLLDIIQSMPHDAHPMGVLASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPIL----------PSNTLSYSENFLYMLDSLGN---KSYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVFTALSGGVGALYGPLHGGANEAVLKMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAIALEKAALSDEYFIKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWKESLDDP--DTKIMRPQQVYTGVWLRHYTPVRER 475

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_009350010.1 (PREDICTED: citrate synthase, glyoxysomal [Pyrus x bretschneideri])

HSP 1 Score: 460.3 bits (1183), Expect = 7.200e-126
Identity = 238/441 (53.97%), Postives = 311/441 (70.52%), Query Frame = 0

Query:   12 VILEYRGQRHRLPVKN-GCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVP 445
            ++ E  G+R+++ V + G ++A DLK  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ S++LEVA+LL+YG LPS  Q   +   V Q  +A+   ++ ++Q I HDAH M  +VS ++A S    DANPAL GQ++YKS+ +R+ Q+  +LG  PT+AA   LR  G  P +          P N  +Y E+FL +L  LG       +P+PR+ R LD++ ++HA+HE+NCSTAA RHL SSG DV+T +AGATGALYGPLHGGA EAVL+ML EIGTVE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y+P
Sbjct:   59 IVDERTGKRYQVQVSDEGTVKATDLKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSTFLEVAYLLMYGNLPSESQYADWEFAVSQ-HSAVPQGILDIIQAIPHDAHPMGVLVSAMSALSVFHPDANPALRGQEIYKSKQVRDKQIARILGKAPTIAAAAYLRLAGRPPVL----------PANNLSYSENFLYMLDSLGN---RSYKPNPRLARVLDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLKMLNEIGTVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWRESLDDP--DTKIMRPQQVYTGNWLRHYIP 483

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: KQL27987.1 (hypothetical protein SETIT_016771mg [Setaria italica])

HSP 1 Score: 460.3 bits (1183), Expect = 7.200e-126
Identity = 239/450 (53.11%), Postives = 316/450 (70.22%), Query Frame = 0

Query:    8 ADQLVILEYR-GQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            A  L +++ R G+RH + V ++G +RA D K  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ SS++EVA+LL+YG LP+  QL  +   + Q  +A+   L+ ++Q++ HDAH M  + S ++  S    DANPAL GQD+YKS+ +R+ Q++ +LG  PT+AA   LR  G  P +          P+N  +Y E+FL +L  LG       +P+PR+ RALDI+ ++HA+HE+NCSTAAVRHL SSG DVFT ++G  GALYGPLHGGA EAVL+ML EIG+VE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YF+ RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y P+  R
Sbjct:  112 AGALTVVDGRTGKRHEVKVSEDGTVRATDFKKITAVKDDKGLKIYDPGYLNTAPVRSTICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGNLPTQSQLASWEFAISQ-HSAVPQGLLDIIQSMPHDAHPMGVLASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPIL----------PSNTLSYSENFLYMLDSLGN---KSYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVFTALSGGVGALYGPLHGGANEAVLKMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAIALEKAALSDEYFIKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWKESLDDP--DTKIMRPQQVYTGVWLRHYTPVRER 545

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: BAF08287.1 (Os02g0232400, partial [Oryza sativa Japonica Group])

HSP 1 Score: 459.9 bits (1182), Expect = 9.400e-126
Identity = 237/439 (53.99%), Postives = 309/439 (70.39%), Query Frame = 0

Query:   18 GQRHRLPVKN-GCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            G+R+ + V + G +RA D K  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ SS++EVA+LL+YG LP+  QL  +   + Q  +A+   L+ ++Q + HDAH M ++ S ++  S    DANPAL GQD+YKS+ +R+ Q++ +LG  PT+AA   LR  G  P +          PTN  +Y E+FL +L  LG     + +P+PR+ R LDI+ ++HA+HE+NCSTAA RHL SSG DVFT ++GA GALYGPLHGGA EAVL+ML EIG+VE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SDDYFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y P+  R
Sbjct:   90 GKRYEVKVSDEGTVRATDFKKITTGKDDKGLKIYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGSLPTQSQLAGWEFAISQ-HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPIL----------PTNSLSYSENFLYMLDSLGD---KEYKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGVDVFTALSGAVGALYGPLHGGANEAVLKMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDDYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWKESLDDP--DTKIMRPQQVYTGVWLRHYTPVRER 512

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_002451828.1 (citrate synthase, glyoxysomal isoform X1 [Sorghum bicolor] >EES04804.1 hypothetical protein SORBI_3004G101900 [Sorghum bicolor])

HSP 1 Score: 459.9 bits (1182), Expect = 9.400e-126
Identity = 239/450 (53.11%), Postives = 316/450 (70.22%), Query Frame = 0

Query:    8 ADQLVILEYR-GQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            A  L +++ R G+RH + V ++G +RA D K  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ SS++EVA+LL+YG LP+  QL  +   + Q  +A+   L+ ++Q++ HDAH M  + S ++  S    DANPAL GQD+YKS+ +R+ Q++ +LG  PT+AA   LR  G  P +          P+N  +Y E+FL +L  LG       +P+PR+ RALDI+ ++HA+HE+NCSTAAVRHL SSG DVFT ++G  GALYGPLHGGA EAVL+ML EIG+VE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R+++ EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y P+  R
Sbjct:   45 AGALAVVDGRTGKRHEVKVSEDGTVRATDFKKITAGKDDKGLKIYDPGYLNTAPVRSTICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGNLPTQSQLASWEFAISQ-HSAVPQGLLDIIQSMPHDAHPMGVLASAMSTLSVFHPDANPALKGQDLYKSKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPIL----------PSNTLSYSENFLYMLDSLGN---KSYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVFTALSGGVGALYGPLHGGANEAVLKMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLSEEVFSIVGRDPLIEVAIALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWKESLDDP--DTKIMRPQQVYTGAWLRHYTPVRER 478

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: KYR02419.1 (citrate synthase [Tieghemostelium lacteum])

HSP 1 Score: 459.9 bits (1182), Expect = 9.400e-126
Identity = 236/437 (54.00%), Postives = 304/437 (69.57%), Query Frame = 0

Query:   18 GQRHRLPVKNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            G+ +   +KNG + A   K  S      GLM YDPG+ NTAV TS+ITYIDG++GILRYRGYPIE+LA+ S++LEVA+LL+ G LP+  QL+ +  ++      +H +LVA+++T R+DAH M  ++ST+AA      ++NPALAGQ+++KS  +R  Q+  ++G  PT+AA     R G  P  T         P N   Y E+FL +  L K    D +P+P + RAL+I+ ++HADHELNCSTAA+RH+ SSGTD +T +AGA GALYGPLHGGA EAVL ML  IGT E IP F+  VK KK+KLMGFGHR+YKN DPRA+++R VAYEVF+  G +PLI +AT LE  A SD+YFV+RKLYPN+DFYSGLIYKA+GFP D FPVLF + R  GWLAHW E L  P  E KI RPRQVY G   R Y+P++ R
Sbjct:   47 GKSYDFKIKNGTLNANLFKEVSETADDNGLMIYDPGFQNTAVVTSYITYIDGDKGILRYRGYPIEELAERSNFLEVAYLLINGNLPNKSQLDQWNNKI-MTHTFLHENLVAMMKTFRYDAHPMGMVISTVAALGTFYPESNPALAGQEIFKSESVRNKQIFRIVGKLPTIAASAWRHRIG-RPYNT---------PVNHLGYTENFLYM--LDKLSEPDYKPNPVLCRALEILFILHADHELNCSTAAMRHIASSGTDPYTAVAGAAGALYGPLHGGANEAVLDMLTHIGTKENIPQFIADVKGKKKKLMGFGHRIYKNYDPRAKIIRRVAYEVFESLGKEPLIEVATELEKQALSDEYFVSRKLYPNVDFYSGLIYKAMGFPTDMFPVLFMIPRAVGWLAHWVEHLEDP--ETKIYRPRQVYKGEWYRNYIPIEGR 468

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_020600132.1 (LOW QUALITY PROTEIN: citrate synthase 3, peroxisomal-like [Phalaenopsis equestris])

HSP 1 Score: 459.9 bits (1182), Expect = 9.400e-126
Identity = 239/473 (50.53%), Postives = 326/473 (68.92%), Query Frame = 0

Query:    8 ADQLVILEYR-GQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDARGGGHATGYDEQAPLMTSSMRARL 472
            A +L++ + R G+R+ L + + G ++A+D K  +      G+  YDPGY+NTA   S ++YIDG+ GILRYRGYPIE+LA+ S++LEVAFLL+YG LPS  QL  +   + Q  +A+   L+ ++QT+ HDAH M  +VS ++  S    DANPAL GQD+Y S+ +R+ Q+  +LG  PT+AA   LR  G  P +          P++  +Y E+FL +L  LG       +P+P++ +ALDI+ ++HA+HE+NCSTAA RHL SSG DV+T +AGA GALYGPLHGGA EAVL+ML EIGTVE IP F++ VK ++RK+ GFGHRVYKN DPRA+++R +A EVF + G DPLI +A ALE AA SDDYFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP+QVY G   R Y P++ RG       +     ++++ R RL
Sbjct:   58 AGKLIVTDSRTGKRYDLEISEEGAVKAVDFKKITTGKDDKGVKIYDPGYLNTAPVRSSVSYIDGDEGILRYRGYPIEELAENSTFLEVAFLLMYGNLPSKSQLADWEFTISQ-HSAVPQGLLDIIQTMPHDAHPMGLLVSAMSTLSVFHPDANPALRGQDLYTSKAVRDKQIARILGKVPTIAAAAYLRLAGRPPVL----------PSSNLSYSENFLYMLDSLGN---RSYKPNPKLAKALDILFILHAEHEMNCSTAAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPDFIDGVKNRRRKMSGFGHRVYKNYDPRAKVIRTLAEEVFSIVGRDPLIEVAVALEKAALSDDYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDP--DTKIMRPQQVYTGVWLRHYQPVEERGFSSPESEEHWQVSVSNATRRRL 514

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_021315577.1 (citrate synthase, glyoxysomal isoform X2 [Sorghum bicolor])

HSP 1 Score: 459.9 bits (1182), Expect = 9.400e-126
Identity = 239/450 (53.11%), Postives = 316/450 (70.22%), Query Frame = 0

Query:    8 ADQLVILEYR-GQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            A  L +++ R G+RH + V ++G +RA D K  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ SS++EVA+LL+YG LP+  QL  +   + Q  +A+   L+ ++Q++ HDAH M  + S ++  S    DANPAL GQD+YKS+ +R+ Q++ +LG  PT+AA   LR  G  P +          P+N  +Y E+FL +L  LG       +P+PR+ RALDI+ ++HA+HE+NCSTAAVRHL SSG DVFT ++G  GALYGPLHGGA EAVL+ML EIG+VE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R+++ EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY G   R Y P+  R
Sbjct:    4 AGALAVVDGRTGKRHEVKVSEDGTVRATDFKKITAGKDDKGLKIYDPGYLNTAPVRSTICYIDGDEGILRYRGYPIEELAESSSFVEVAYLLMYGNLPTQSQLASWEFAISQ-HSAVPQGLLDIIQSMPHDAHPMGVLASAMSTLSVFHPDANPALKGQDLYKSKQVRDKQIVRVLGKAPTIAAAAYLRLAGRPPIL----------PSNTLSYSENFLYMLDSLGN---KSYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVFTALSGGVGALYGPLHGGANEAVLKMLNEIGSVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLSEEVFSIVGRDPLIEVAIALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWKESLDDP--DTKIMRPQQVYTGAWLRHYTPVRER 437

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BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_021800150.1 (citrate synthase, glyoxysomal [Prunus avium])

HSP 1 Score: 459.9 bits (1182), Expect = 9.400e-126
Identity = 240/441 (54.42%), Postives = 312/441 (70.75%), Query Frame = 0

Query:   12 VILEYRGQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVP 445
            ++ E  G+R+++ V + G I+A DLK  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ S++LEVA+LL+YG LPS  Q   +   V Q  +A+   ++ ++Q I HDAH M  +VS ++A S    DANPAL GQDVYKS+ +R+ Q+  +LG  PT+AA   LR  G  P +          P N  +Y E+FL +L  LG       +P+PR+ R +D++ ++HA+HE+NCSTAA RHL SSG DV+T +AGATGALYGPLHGGA EAVL+ML EIGTVE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAGWLAHW E L  P  + KI+RP+QVY+G   R Y+P
Sbjct:   59 IVDERTGKRYQVQVSEEGTIKAADLKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSTFLEVAYLLMYGNLPSESQSADWEFAVSQ-HSAVPQGILDIIQAIPHDAHPMGVLVSAMSALSVFHPDANPALRGQDVYKSKQVRDKQIARILGKAPTIAAAAYLRLAG-RPAVL---------PANNLSYAENFLYMLDSLGN---RSYKPNPRLARVVDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGWLAHWRESLDDP--DTKIMRPQQVYIGNWLRHYIP 483

The following BLAST results are available for this feature:

BLAST of NO19G01880 vs. NCBI_GenBank

BLAST of NO19G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_007217210.1	5.500e-126	54.42	citrate synthase, glyoxysomal [Prunus persica] >ON...	[more]
XP_004951381.1	7.200e-126	53.11	citrate synthase 3, peroxisomal [Setaria italica]	[more]
XP_009350010.1	7.200e-126	53.97	PREDICTED: citrate synthase, glyoxysomal [Pyrus x ...	[more]
KQL27987.1	7.200e-126	53.11	hypothetical protein SETIT_016771mg [Setaria itali...	[more]
BAF08287.1	9.400e-126	53.99	Os02g0232400, partial [Oryza sativa Japonica Group...	[more]
XP_002451828.1	9.400e-126	53.11	citrate synthase, glyoxysomal isoform X1 [Sorghum ...	[more]
KYR02419.1	9.400e-126	54.00	citrate synthase [Tieghemostelium lacteum]	[more]
XP_020600132.1	9.400e-126	50.53	LOW QUALITY PROTEIN: citrate synthase 3, peroxisom...	[more]
XP_021315577.1	9.400e-126	53.11	citrate synthase, glyoxysomal isoform X2 [Sorghum ...	[more]
XP_021800150.1	9.400e-126	54.42	citrate synthase, glyoxysomal [Prunus avium]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL012	nonsL012	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR034	ncniR034	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR039	ngnoR039	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO19G01880.1	NO19G01880.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599276	gene_7591	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO19G01880.1	NO19G01880.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO19G01880 ID=NO19G01880|Name=NO19G01880|organism=Nannochloropsis oceanica|type=gene|length=4796bp
AAAACACAGCGGGCCAAACCACGCCCTTATCAACTCTCGCCTCATCTCCC
TTATCCTCCTACTGCGAAATCAGTCCTCGGCGTGGGGCTATCGAACAAAG
ACCCAAGAGACGTAAACCAGGCCTTTCATCGCATAGTATTATTCAAAGCA
GCAACAGCACAAAGAGGTCATGTCCAACTCCGTCGTCGAGGCGGATCAAC
TAGTCATCCTAGAGTATCGAGGCCAACGCCACAGGCTGCCTGTCAAGAAT
GGGTGCATAAGAGCCATTGATCTCAAGTCGGCGTCAGGACTTATGTCCTA
CGATCCAGgtacgtaagatgtagatggctcactgtacgcgcgaaatgata
ttggtacgtaggtgagggaatcgaagaacaacagaaccagtatctagatg
atacacacgaccgtatggtgtacaggcttaggcatgtaggtgcgttcaaa
gttttgaacagaaaaagatggaagaggcagatttgacatgtctatacacc
ggctccccccctcattacgcgcaccagcaccctgagtggaaatgatggag
ggaaatcctggctgaataccgaggcatgtactctttccttggctgggcgg
tttccctattcaccatttaagaaccttgctcttcacttgatgatcaaatc
catctatccttcatcatacctcttattcatcacttatgcgccctctcaac
cctgcagGCTATATGAACACGGCTGTCTGCACGAGCCACATCACCTACAT
AGACGGGGAGAGGGGAATTTTGCGGTATCGGGGCTATCCCATCGAGCAGC
TGGCGAAATATTCCAGCTATTTGGAAGTGGCCTTCCTGCTGCTGTACGGC
GAGCTGCCCAGCGCCCCCCAACTCGAGCATTTTTGTGCCCGAGTCTACCA
GCGCCAGGCGGCGATCCACACAGACCTGGTGGCTTTGCTGCAAACCATTC
GCCATGACGCTCACAGTATGACGTCCATCGTTAGCACTCTGGCCGCCTTC
TCTGCCCTCCGTGCCGACGCCAATCCGGCCCTGGCCGGCCAGGACGTCTA
CAAGTCCAGGGTCATGCGAGAAGACCAGATGATCACCCTCTTGGGTATTT
TCCCCACCCTAGCCGCCCAGCTGTTGCTGCGCCGCACTGGGTCAGAGCCG
TGTATCACATTGCCATCGGCCGCAATGCTCCTTGACCCCACAAACCCCCG
CGCCTACGTGGAGCACTTTCTCTGCTTGCTGGGTCTGGGCAAAGCCCGTG
CAAGCGACAGCCGGCCCGACCCGCGCGTGGTGCGAGCCCTGGACATCATC
CTGTTGGTGCACGCCGACCACGAGCTCAACTGCTCCACAGCCGCAGTCCG
TCACCTGACCAGCTCGGGTACGGACGTGTTCACGACAATTGCCGGAGCAA
CCGGCGCGCTTTATGGGCCCTTACACGGTGGGGCGACAGAGGCGGTCCTG
CGCATGCTCCAAGAAATTGGGACGGTGGAGCGCATCCCGGCATTTGTGGA
GGCTGTAAAGGCCAAGAAGCGTAAGCTCATGGGTTTTGGGCATCGCGTGT
ACAAGAATAACGACCCGCGGGCCCAGCTGGTAAGGGAGGTGGCTTACGAG
GTGTTCGACGTCTATGGTGCCGACCCCTTGATCCACCTGGCCACGGCTCT
CGAGGCCGCGGCCCGCTCGGACGATTACTTCGTCGCCCGCAAGCTCTACC
CTAACATCGATTTCTATTCAGGTCTGATTTATAAGGCCATCGGCTTCCCC
GTCGACTATTTTCCCGTGCTGTTCACCATGGGCCGCATGGCGGGCTGGCT
GGCCCACTGGGACGAGCTCTTGGCTGGGCCGTTGGAGGAGCAAAAGATTG
TGCGTCCCCGACAAGTCTACCTTGGTCCCATCGAGCGGCCATACGTTCCG
CTGGATGCACGTGGGGGAGGACACGCGACCGGCTATGATGAGCAAGCGCC
GCTGATGACCTCGTCGATGCGAGCACGGCTGTAACGGCGAGAGTGAGGAA
TAGCGACCAAGTAAAGAACATGTGTGCACATTTAAACTACGTTTTGAAAA
ATCTGCCATTCATGCAAAACTTATTTCATCTCTTTGGTTTTGGCGTCTTT
AAGAGCTGCCGTGTACAGAATCTTGGGCGTAGTATGTATAAACGAATGGG
TGAAATCCGGATGTGCTATTTTTGTGTGGCTCAACCAAGGCCTGACTTTG
ACCTTTCTATTCCAATGTTGCTATTTTCAATCATGCGTAGGAATGAAATA
AACAAATCAGGATGACTGGAGGATGAATGGATGAGTACCAGAGAAGGCGA
GGCAGTGATGCGCGCTGTGCCCATCTGTCGCCGGTATACCACGTATGTAG
TATGTAAATAAACTATAAATAACTAAATAATGAAATAAAATAAATAAATT
AAAAGAAAGGAATAGCGACGTCGACTTCTCTTTCTTACTTCTCACATCTT
CCGATGCATTTTTATATCAGAGCCCTTGCCCTCCATTCTCAAACTTAAGA
TCCTTTATCGGGCGACATTTTTGTGACTCCCATCATCTATGTTCATGCTT
CTTGTCTCGCAGGAAGTATTTCCGGTTCTCCACCACTTAGTCACGCCGGC
TGCCGCCCAAAAGCTGCAAGATGAAGAGGAAAAGGTTAATGATATCAAGG
TAAAGCATGATGCTGGCAATAATGGCCTGCTCAGGGCCAAACCGCTTCGA
CAGCAACCATGTGTCGTACACAATAAGTGCAGAGAACAAGAGAGCGCCAA
ATAAGGAGTAAAAAAACGTCGAGCGCCAGCCCGTCAGCCAAGAAATGAGT
CCCCAAACAATTAAGCCTATCAAACCTGCCATACAAAACCCTCCTAAGAA
GGAGAAGTCCTTGTCACTGTAATAGGTGTAGGCGGTGAGGCCCACAAAGA
TAGCCAGCGTGATGCCAAAAGCCTGCAAGACCAGCTCACCGGATCCCTGA
CGGTAGTATATGGCGCAAATGAGGCCCACCAGAAAGGACTGACAAAGCGT
AAATGCAACAAGCAACACCATGTTCCACGGATGCTTTTGCTTGAAGCAGA
ATAGGCCAATTAGGCAGGCAAAGGACAGGACGAGGGCGAGGGTGAAGAGC
TGGGGCGTGGCAAGGACGAAATCGCTGACGCTGCGGTTGAAACAAAACAG
GCAGGCCACCCCCACCGTAGTGAGCAACTGTATGCTCAAAATTGAATACA
CTTTTCGAAGTAAGGCCAGGCGGATTTGGCCTTGAGTGTTTTCCATGAAC
GAGGAGGGAACATGCTCTGCCACTTGTGCCGCCTCGGGATCATAAAACTC
GTCGCCGCCAGCTTTGGGGTAGGGCTGGGTGGGGAGCTGCTGCTGGTGTT
GCGCATGCGGGTGGTGGGAATAAGTCGCCGGTTGCGGCTGCTGTTGATAG
GCCGGGCAGTAAACCGTGGGCATTTCCTGCGAGGCCACTGGGTAGGCATG
CCGCTGGTAGTAGTACGGGGACGATGATGCATCAGGTGCTTCCACTACGC
CGTGCTCCCCGCGCTTGGGGTCATGATAGGACATTTTTATAAGTCGTATT
ATTATTTAGTGCAATATCTGTGGGGTTCGAGGATGGCGGAGGAGGGAGAA
GAATGCTGCGTTAGAGGAATAGAAAGGATACCTTTGAGGAGATACAACGA
AGGCAATACTGCAGCGCACATCGCACGCCTTCTGACTGAGGAGACACAGA
TCTTGAGATTGATGAATACATTCAGCCAGGCCAAGTACACATGGTGTGTG
AGGGAGGTGGACGGGGAGTGAGCTGGAGGAAGGCAGTCCCGCGGCGTTAT
TTGACGCGGTCTGTGCTCGGTGATCAGCGCAGAATGATGATCGTTCGTCG
GCCGTTGAAAGTGGCGGCCCAGATTGGGGCAGTCAACACTGCCATGCCAG
ACCATGCGCGCACCGCTTGCCATTGGATCAATTGAAATTTACAGTTGACG
GTAATAGAAGAATTTCCAAATCTTCCCTTTCCCTCACGCAACTGAGGTGT
AGGGCATCATTTACTGGCCTCTTTTTCTGAGCCAGCAAAACCTCATCAAG
GCGCCCTGTCAGTGCATCAGTGACAAGTCAGGAAAGTATTGTCCGGAATC
AAACATTATACCAGAAAATAAGCTCGCGTCGACTTGTCGCGAGGAAAGCG
TATCAGCTGAAGGATAGTGACCGAAATGCAAAATAAATTCAGCGCCGCCC
CCCTTCTCTCCTACACACACTTAGAACGAAACCGAAACCGAAGCCCCCAC
CCCTTTTCCTGATGCTCTCCTTGGCAGCAGGTTATCTACGGATCCCGACA
GAGTCCCAAAAATTTCCGTTACGGAAAGCATACCAAAGGTTAAAACTAAT
TGGAGTCCATGTTCATTTTGCCATCCCGTTCTCACAAGTTGTTTTGACTA
ATTTAGGGCTATGGCGTGACATGATTGAAAGTTGATGGAAGACAAGGAGG
GATAAGTAAACGGTGCTTTTACAAAAGCTGCTCTTCATGAGATATTGAAC
CCATACGGGCCAGGAGTCATCAATTCGAAATGTGACTCGATGGCACTGGT
AAATGATTGTGATCTACCTGCAGGGAATGGTTCCATATCGTGAGTGTGAA
CTCGACATGGAAAGTCGTTGAACGCGTGAACAACCCTGCCGCCTGCGCGA
CCTTTTGACGGACTTGCAGGGTAGAGTTAGTATTCATGGTAAAATTCTTA
CACTTCAAGGACAAAGCGGTTTAAGAAGTTGCGTGTAATACACCAGGGGT
ATACAAGGATAGTTCCACAAGGAAAAAATAAGCCAGAAAAGGTTGG

protein sequence of NO19G01880.1

>NO19G01880.1-protein ID=NO19G01880.1-protein|Name=NO19G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MSNSVVEADQLVILEYRGQRHRLPVKNGCIRAIDLKSASGLMSYDPGYMN
TAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAP
QLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRAD
ANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPS
AAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHAD
HELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEI
GTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYG
ADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPV
LFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDARGG
GHATGYDEQAPLMTSSMRARL*

Synonyms

Publications