NO19G01880, NO19G01880 (gene) Nannochloropsis oceanica

Overview
NameNO19G01880
Unique NameNO19G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4796
Alignment locationchr19:556655..561450 -

Link to JBrowse

Properties
Property NameValue
DescriptionCitrate synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:556655..561450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046912transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR036969Citrate_synthase_sf
IPR002020Citrate_synthase-like
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO19G01880 vs. NCBI_GenBank
Match: EWM23670.1 (citrate synthase [Nannochloropsis gaditana])

HSP 1 Score: 694.9 bits (1792), Expect = 1.700e-196
Identity = 347/461 (75.27%), Postives = 386/461 (83.73%), Query Frame = 0
Query:   12 VILEYRGQRHRLPVKNGCIRAIDLKSASGLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSE-PCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDARGGGHATGYDEQAPLMTSSMRARL 472
            V +E +G+   + V + CI+A  LKS  GLMSYDPGYMNTAVCTS IT+IDGE+GILRYRGYPIEQLA  SS++E AFLLLYGELPS  QL+HFCARVY  Q A+H D+VALLQTIRHDAH MTS++S LAA SAL  +ANPAL GQ VY SR  RE QM TLLG FPTLAA +LLRR+GS  PC+  PS A LLDP  PRAYVEHFL LLGLGKAR  +  PDPRVVRALD ILL HADHELNCSTAAVRHLTSSG DV+T +AGATGALYGPLHGGATEAVLRMLQ+IGT ERIPAF+EAVKAK+ KLMGFGHRVYKN DPRA LVREVAYEVF VYGADPLIH+ATALE AARSDDYFV+RKLYPNIDFYSGL+YKAIGFP+D+FPVLFTMGRMAGWLAHW+ELL GP EE+KIVRPRQ+YLGP ER ++P++AR  GH     E   L+ S+ RARL
Sbjct:   15 VRVESQGRHGVMSVTHNCIKASKLKSTLGLMSYDPGYMNTAVCTSRITFIDGEKGILRYRGYPIEQLASKSSFMETAFLLLYGELPSEAQLKHFCARVYHHQTALHADIVALLQTIRHDAHCMTSVISALAAMSALHPEANPALEGQGVYSSRKTRESQMFTLLGAFPTLAAHVLLRRSGSSVPCLPAPSLATLLDPARPRAYVEHFLVLLGLGKARPGEEGPDPRVVRALDAILLAHADHELNCSTAAVRHLTSSGVDVYTAVAGATGALYGPLHGGATEAVLRMLQQIGTEERIPAFLEAVKAKEAKLMGFGHRVYKNYDPRAVLVREVAYEVFQVYGADPLIHVATALETAARSDDYFVSRKLYPNIDFYSGLVYKAIGFPLDFFPVLFTMGRMAGWLAHWEELLMGPEEEKKIVRPRQIYLGPAERAFLPIEAR--GHVRIAAEPERLLPSTTRARL 473          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_002960966.1 (citrate synthase 3, peroxisomal [Selaginella moellendorffii] >EFJ38505.1 hypothetical protein SELMODRAFT_266549 [Selaginella moellendorffii])

HSP 1 Score: 467.6 bits (1202), Expect = 4.500e-128
Identity = 239/446 (53.59%), Postives = 320/446 (71.75%), Query Frame = 0
Query:   11 LVILEYR-GQRHRLPVKN-GCIRAIDLKSA------SGLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            L +++ R G+++   + + G + A D K        +GL  YDPGY+NTA   S I+YIDG++GILRYRGYPIE+LA++S+YLEVA+LL+YG LP+  QL  + A + Q  +A+   ++A++  + HDAH M ++V ++ A S+   DANPAL GQD+YKS+ +R+ Q++ ++G  PTLAA   LR  G  P          + P+N  +Y E+FL +L     R  + RP+PR+ RALDI+ ++HA+HE+NCSTAA RHL SSG DV+T IAGATGALYGPLHGGA EAVL+ML EIGTVE+IP F+E VK +KRKL GFGHRVYKN DPRA++++ ++ EVF + G DPLI +A ALE AA SDDYFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP+Q Y+G   R Y+PL  R
Sbjct:   45 LTVVDNRTGKKYEFAISDGGTVNATDFKKIKAEGDDNGLKLYDPGYLNTAPVRSSISYIDGDKGILRYRGYPIEELAEHSTYLEVAYLLMYGYLPTKAQLSDWEATIMQ-HSALPEGVLAVISDLPHDAHPMGTLVGSICALSSFHPDANPALRGQDLYKSKPVRDKQIVRIIGKVPTLAAAAYLRMAGRHP----------VAPSNSLSYAENFLYMLDSMGDR--NYRPNPRLARALDILFILHAEHEMNCSTAAARHLASSGVDVYTAIAGATGALYGPLHGGANEAVLKMLSEIGTVEKIPEFIEGVKNRKRKLSGFGHRVYKNYDPRAKVIKNLSEEVFSIVGRDPLIEVAVALERAALSDDYFVKRKLYPNVDFYSGLIYRALGFPSEFFPVLFAVPRMAGYLAHWKESLDDP--DTKIMRPQQWYIGEWLRKYIPLSNR 475          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_024528054.1 (citrate synthase 3, peroxisomal [Selaginella moellendorffii])

HSP 1 Score: 467.6 bits (1202), Expect = 4.500e-128
Identity = 239/446 (53.59%), Postives = 320/446 (71.75%), Query Frame = 0
Query:   11 LVILEYR-GQRHRLPVKN-GCIRAIDLKSA------SGLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            L +++ R G+++   + + G + A D K        +GL  YDPGY+NTA   S I+YIDG++GILRYRGYPIE+LA++S+YLEVA+LL+YG LP+  QL  + A + Q  +A+   ++A++  + HDAH M ++V ++ A S+   DANPAL GQD+YKS+ +R+ Q++ ++G  PTLAA   LR  G  P          + P+N  +Y E+FL +L     R  + RP+PR+ RALDI+ ++HA+HE+NCSTAA RHL SSG DV+T IAGATGALYGPLHGGA EAVL+ML EIGTVE+IP F+E VK +KRKL GFGHRVYKN DPRA++++ ++ EVF + G DPLI +A ALE AA SDDYFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP+Q Y+G   R Y+PL  R
Sbjct:   45 LTVVDNRTGKKYEFAISDGGTVNATDFKKIKAEGDDNGLKLYDPGYLNTAPVRSSISYIDGDKGILRYRGYPIEELAEHSTYLEVAYLLMYGYLPTKAQLSDWEATIMQ-HSALPEGVLAVISDLPHDAHPMGTLVGSICALSSFHPDANPALRGQDLYKSKPVRDKQIVRIIGKVPTLAAAAYLRMAGRHP----------VAPSNSLSYAENFLYMLDSMGDR--NYRPNPRLARALDILFILHAEHEMNCSTAAARHLASSGVDVYTAIAGATGALYGPLHGGANEAVLKMLSEIGTVEKIPEFIEGVKNRKRKLSGFGHRVYKNYDPRAKVIKNLSEEVFSIVGRDPLIEVAVALERAALSDDYFVKRKLYPNVDFYSGLIYRALGFPSEFFPVLFAVPRMAGYLAHWKESLDDP--DTKIMRPQQWYIGEWLRKYIPLSNR 475          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_003291998.1 (citrate synthase [Dictyostelium purpureum] >EGC31493.1 citrate synthase [Dictyostelium purpureum])

HSP 1 Score: 465.7 bits (1197), Expect = 1.700e-127
Identity = 240/437 (54.92%), Postives = 307/437 (70.25%), Query Frame = 0
Query:   18 GQRHRLPVKNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            G+     +KNG + A + K  S      GLM YDPG+ NTAV TS+ITYIDG++GILRYRGYPIE+LA+ S++LEVA+LL+ G LP+  QL+ +  ++      +H +LV L++T R+DAH M  ++ST+AA      ++NPALAGQD++KS   R  Q+  ++G  PT+AA     R G  P  T         P N   Y E+FL +  L K   +D +P+P + RAL+I+ ++HADHELNCSTAA+RH++SSGTD +T++AGA GALYGPLHGGA EAVL ML  IGT E IP F+  VKAKK+KLMGFGHR+YKN DPRA+++R VAYEVF+  G +PLI +AT LE  A SD+YFV+RKLYPN+DFYSGLIYKA+GFP D FPVLFT+ R  GWLAHW E L  P  E KI RPRQVY G   R YVP++ R
Sbjct:   46 GKNFEFKIKNGTVNATNFKQLSENKEDGGLMIYDPGFQNTAVVTSYITYIDGDKGILRYRGYPIEELAERSTFLEVAYLLINGNLPNKSQLDGWSHKI-MTHTFLHENLVGLMKTFRYDAHPMGMLISTVAALGTFYPESNPALAGQDIFKSESARNKQIYRIVGKLPTIAACAWRHRIG-RPYNT---------PVNHLGYTENFLYM--LDKLSENDYKPNPVLCRALEILFILHADHELNCSTAAMRHISSSGTDPYTSVAGAAGALYGPLHGGANEAVLDMLVHIGTKENIPQFIADVKAKKKKLMGFGHRIYKNYDPRAKIIRRVAYEVFESLGKEPLIEVATELEKQALSDEYFVSRKLYPNVDFYSGLIYKAMGFPTDMFPVLFTIPRAVGWLAHWVEHLEDP--ETKIYRPRQVYKGEWFRNYVPIEGR 467          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_006448012.1 (citrate synthase, glyoxysomal [Citrus clementina] >XP_006492249.1 PREDICTED: citrate synthase, glyoxysomal [Citrus sinensis] >ESR61252.1 hypothetical protein CICLE_v10014944mg [Citrus clementina] >KDO58597.1 hypothetical protein CISIN_1g010304mg [Citrus sinensis] >GAY51750.1 hypothetical protein CUMW_136650 [Citrus unshiu])

HSP 1 Score: 463.4 bits (1191), Expect = 8.500e-127
Identity = 240/444 (54.05%), Postives = 314/444 (70.72%), Query Frame = 0
Query:   12 VILEYRGQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            V+ E  G+R+++PV + G ++A D K  +      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ SS+LEVA+LL+YG LPS  QL  +   V Q  +A+   ++ ++Q + HDAH M  +VS ++A S    DANPAL GQD+YKS+ +R+ Q+  +LG  PT+AA   LR  G  P +          P+N  +Y E+FL +L     RA   +P+PR+ R LD++ ++HA+HE+NCST+A RHL SSG DV+T +AGA GALYGPLHGGA EAVL+ML EIGTVE IP F+E VK +KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP+QVY G   R Y+PL  R
Sbjct:   58 VVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQ-HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVL----------PSNNLSYSENFLYMLDSLGNRA--YKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDP--DTKIMRPQQVYTGVWMRHYMPLKER 486          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_020438535.1 (citrate synthase [Heterostelium album PN500] >EFA86430.1 citrate synthase [Heterostelium album PN500])

HSP 1 Score: 462.6 bits (1189), Expect = 1.500e-126
Identity = 238/450 (52.89%), Postives = 312/450 (69.33%), Query Frame = 0
Query:    6 VEADQLVILEYR-GQRHRLPVKNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            V+ D + + + R G+ + +P+K+  I A+  +  S      GLM YDPG+ NTAV TS ITYIDG++GILRYRGYPIE+LA+ SS+LEVA+LL+ G LP+  QL+ +  R+      +H +LV +++T R+DAH M  ++ST+AA      +ANPAL GQD++KS  +R  Q++ ++G  PT+AA     R G  P  T         P N   Y E+FL +  L K    D +P+P + RAL+I+ ++HADHELNCSTAA+RH+ SSGTD +T++AGA GALYGP HGGA EAVL MLQ+IG  + +P F+  VKAKK+KLMGFGHR+YKN DPRA+++R VAYEVFD  G +PLI +AT LE  A +D+YF+ RKLYPN+DFYSGLIYKA+GFP D FPVLFT+ R  GWLAHW E    P  E KI RPRQVY G   R YVP++ R
Sbjct:   35 VKKDSITVTDNRTGKTYNVPIKDLTINALAFREVSETAGDNGLMVYDPGFQNTAVVTSTITYIDGDKGILRYRGYPIEELAERSSFLEVAYLLINGNLPNKVQLDSWSNRI-MTHTFLHENLVGMMKTFRYDAHPMGMLISTVAALGTFYPEANPALVGQDIFKSESVRNKQILRIVGKLPTIAACAWRHRIG-RPYNT---------PVNHLGYTENFLYM--LDKLSEQDYKPNPVLCRALEILFILHADHELNCSTAAMRHIASSGTDPYTSVAGAAGALYGPSHGGANEAVLDMLQQIGAKDNVPQFIADVKAKKKKLMGFGHRIYKNYDPRAKIIRRVAYEVFDSLGKEPLIEVATELEKQALNDEYFIQRKLYPNVDFYSGLIYKAMGFPTDMFPVLFTIPRAVGWLAHWIEHCEDP--ETKIYRPRQVYKGEWFRNYVPIEGR 469          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_005704031.1 (citrate synthase [Galdieria sulphuraria] >EME27511.1 citrate synthase [Galdieria sulphuraria])

HSP 1 Score: 462.2 bits (1188), Expect = 1.900e-126
Identity = 239/437 (54.69%), Postives = 309/437 (70.71%), Query Frame = 0
Query:   12 VILEYRGQRHRLPVKNGCIRAIDLKSASGLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            VI    GQ   L + N  IRA+DL +  G+  YDPG++NTA C S ITYIDG++GILRYRGYPIE+LA+ S+++EV+FLLLYGELP++ +LEHF  RV  R   +   LV +++    ++H M  +VS LAA   L  DANPA++G DVY S  +RE Q++ LLG  PTLAA +   + G       P+          R+Y E+F+ +  L        RP+  +V+ALD + ++HADHELNCSTAAVRHLTSS  DVFT  +GA GALYGPLHGGA EAVLRML+ IG+VE++PAF+EAVK +K +LMGFGHRVYKN DPRA++VR++AY+VF++ G DPLI +AT LE  A  D+YF+ RKLYPN+DFYSGLIYKA+GFP D+F +LF +GR  GWLAHW E L  P  ++KI RP+Q YLG  +R Y+PL  R
Sbjct:   29 VIDNQTGQELTLELHNNTIRAVDL-AKLGVTVYDPGFLNTASCISRITYIDGDKGILRYRGYPIEELAEKSTFMEVSFLLLYGELPTSRELEHFTHRVL-RHTFLKQSLVDIIKATPKESHPMGLLVSMLAAEGTLYPDANPAISGGDVYNSPRVREKQILRLLGTMPTLAAFVYRHKMGRP--FNYPAYG------GSRSYTENFMYM--LDSMEDPSYRPNATLVKALDTLFVLHADHELNCSTAAVRHLTSSDVDVFTAFSGAAGALYGPLHGGANEAVLRMLERIGSVEKVPAFIEAVKNRKARLMGFGHRVYKNYDPRARIVRKLAYQVFEICGKDPLIEIATTLEEHALKDNYFIERKLYPNVDFYSGLIYKAMGFPTDFFTILFAIGRTPGWLAHWLEYLDDP--DKKIARPKQNYLGSDQRSYIPLTQR 451          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: KDP26979.1 (hypothetical protein JCGZ_22095 [Jatropha curcas])

HSP 1 Score: 462.2 bits (1188), Expect = 1.900e-126
Identity = 239/445 (53.71%), Postives = 317/445 (71.24%), Query Frame = 0
Query:   12 VILEYRGQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            V+ E  G+++++PV +NG I+A D K  S      GL  YDPGY+NTA   S I+YIDG+ GILRYRGYPIE+LA+ S++LEV++L+LYG LPS  QL  +   + Q  +A+   ++ ++Q + HDAH M  +VS ++A S    DANPAL GQD+YKS+ +R+ Q+  +LG  PT+AA   LR  G  P +          P++  +Y E+FL +L  LG       +P+PR+ R LD++ ++HA+HE+NCSTAA RHL SSG DV+T +AGA GALYGPLHGGA EAVL+ML EIGTVE IP F+E VK++KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP+QVY G   R Y+PL  R
Sbjct:   61 VVDERTGKKYQIPVSENGTIKASDFKKISTGKNDKGLKLYDPGYLNTAPVQSSISYIDGDEGILRYRGYPIEELAESSTFLEVSYLILYGNLPSENQLADWEFAISQ-HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALRGQDLYKSKQVRDKQIARILGKAPTIAAAAYLRLAGRPPVL----------PSSNLSYAENFLYMLDSLGN---RSYKPNPRLARVLDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGTVENIPDFIEGVKSRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDP--DTKIMRPQQVYTGVWLRHYMPLKER 489          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_012084988.2 (citrate synthase, glyoxysomal [Jatropha curcas])

HSP 1 Score: 462.2 bits (1188), Expect = 1.900e-126
Identity = 239/445 (53.71%), Postives = 317/445 (71.24%), Query Frame = 0
Query:   12 VILEYRGQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLL-GLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            V+ E  G+++++PV +NG I+A D K  S      GL  YDPGY+NTA   S I+YIDG+ GILRYRGYPIE+LA+ S++LEV++L+LYG LPS  QL  +   + Q  +A+   ++ ++Q + HDAH M  +VS ++A S    DANPAL GQD+YKS+ +R+ Q+  +LG  PT+AA   LR  G  P +          P++  +Y E+FL +L  LG       +P+PR+ R LD++ ++HA+HE+NCSTAA RHL SSG DV+T +AGA GALYGPLHGGA EAVL+ML EIGTVE IP F+E VK++KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP+QVY G   R Y+PL  R
Sbjct:  105 VVDERTGKKYQIPVSENGTIKASDFKKISTGKNDKGLKLYDPGYLNTAPVQSSISYIDGDEGILRYRGYPIEELAESSTFLEVSYLILYGNLPSENQLADWEFAISQ-HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALRGQDLYKSKQVRDKQIARILGKAPTIAAAAYLRLAGRPPVL----------PSSNLSYAENFLYMLDSLGN---RSYKPNPRLARVLDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGTVENIPDFIEGVKSRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDP--DTKIMRPQQVYTGVWLRHYMPLKER 533          
BLAST of NO19G01880 vs. NCBI_GenBank
Match: XP_024185232.1 (citrate synthase, glyoxysomal [Rosa chinensis] >PRQ52006.1 putative transferase [Rosa chinensis])

HSP 1 Score: 461.5 bits (1186), Expect = 3.200e-126
Identity = 241/444 (54.28%), Postives = 315/444 (70.95%), Query Frame = 0
Query:   12 VILEYRGQRHRLPV-KNGCIRAIDLKSAS------GLMSYDPGYMNTAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAPQLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRADANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPSAAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHADHELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEIGTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYGADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPVLFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDAR 449
            V+ E  G+R+++ V + G ++A DLK  S      GL  YDPGY+NTA   S I YIDG+ GILRYRGYPIE+LA+ S+YLEVA+LL+YG LPS  QL  +   V Q  +A+   ++ ++Q I HDAH M  +VS ++A S    DANPAL GQD+Y+S+ +R+ Q+  +LG  PT+AA   LR  G  P +          P+N  +Y E+FL +L     RA   +P+PR+ R LDI+ ++HA+HE+NCSTAA RHL SSG DV+T ++GA GALYGPLHGGA EAVL+ML EIG+VE IP F+E VK++KRK+ GFGHRVYKN DPRA+++R++A EVF + G DPLI +A ALE AA SD+YFV RKLYPN+DFYSGLIY+A+GFP ++FPVLF + RMAG+LAHW E L  P  + KI+RP QVY+G   R Y+PL  R
Sbjct:   52 VVDERTGKRYQVQVSEQGTVKATDLKKISTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSTYLEVAYLLMYGNLPSQSQLADWEFAVTQ-HSAVPQGILDIIQAIPHDAHPMGVLVSAMSALSVFHPDANPALRGQDLYQSKQVRDKQIARILGKAPTIAAAAYLRLAGRPPVL----------PSNNLSYSENFLYMLDSLGDRA--YKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGVDVYTALSGAVGALYGPLHGGANEAVLKMLSEIGSVENIPEFIEGVKSRKRKMSGFGHRVYKNYDPRAKVIRKLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDP--DTKIMRPAQVYVGEWLRHYMPLKER 480          
The following BLAST results are available for this feature:
BLAST of NO19G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23670.11.700e-19675.27citrate synthase [Nannochloropsis gaditana][more]
XP_002960966.14.500e-12853.59citrate synthase 3, peroxisomal [Selaginella moell... [more]
XP_024528054.14.500e-12853.59citrate synthase 3, peroxisomal [Selaginella moell... [more]
XP_003291998.11.700e-12754.92citrate synthase [Dictyostelium purpureum] >EGC314... [more]
XP_006448012.18.500e-12754.05citrate synthase, glyoxysomal [Citrus clementina] ... [more]
XP_020438535.11.500e-12652.89citrate synthase [Heterostelium album PN500] >EFA8... [more]
XP_005704031.11.900e-12654.69citrate synthase [Galdieria sulphuraria] >EME27511... [more]
KDP26979.11.900e-12653.71hypothetical protein JCGZ_22095 [Jatropha curcas][more]
XP_012084988.21.900e-12653.71citrate synthase, glyoxysomal [Jatropha curcas][more]
XP_024185232.13.200e-12654.28citrate synthase, glyoxysomal [Rosa chinensis] >PR... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01880.1NO19G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599276gene_7591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01880.1NO19G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01880 ID=NO19G01880|Name=NO19G01880|organism=Nannochloropsis oceanica|type=gene|length=4796bp
AAAACACAGCGGGCCAAACCACGCCCTTATCAACTCTCGCCTCATCTCCC
TTATCCTCCTACTGCGAAATCAGTCCTCGGCGTGGGGCTATCGAACAAAG
ACCCAAGAGACGTAAACCAGGCCTTTCATCGCATAGTATTATTCAAAGCA
GCAACAGCACAAAGAGGTCATGTCCAACTCCGTCGTCGAGGCGGATCAAC
TAGTCATCCTAGAGTATCGAGGCCAACGCCACAGGCTGCCTGTCAAGAAT
GGGTGCATAAGAGCCATTGATCTCAAGTCGGCGTCAGGACTTATGTCCTA
CGATCCAGgtacgtaagatgtagatggctcactgtacgcgcgaaatgata
ttggtacgtaggtgagggaatcgaagaacaacagaaccagtatctagatg
atacacacgaccgtatggtgtacaggcttaggcatgtaggtgcgttcaaa
gttttgaacagaaaaagatggaagaggcagatttgacatgtctatacacc
ggctccccccctcattacgcgcaccagcaccctgagtggaaatgatggag
ggaaatcctggctgaataccgaggcatgtactctttccttggctgggcgg
tttccctattcaccatttaagaaccttgctcttcacttgatgatcaaatc
catctatccttcatcatacctcttattcatcacttatgcgccctctcaac
cctgcagGCTATATGAACACGGCTGTCTGCACGAGCCACATCACCTACAT
AGACGGGGAGAGGGGAATTTTGCGGTATCGGGGCTATCCCATCGAGCAGC
TGGCGAAATATTCCAGCTATTTGGAAGTGGCCTTCCTGCTGCTGTACGGC
GAGCTGCCCAGCGCCCCCCAACTCGAGCATTTTTGTGCCCGAGTCTACCA
GCGCCAGGCGGCGATCCACACAGACCTGGTGGCTTTGCTGCAAACCATTC
GCCATGACGCTCACAGTATGACGTCCATCGTTAGCACTCTGGCCGCCTTC
TCTGCCCTCCGTGCCGACGCCAATCCGGCCCTGGCCGGCCAGGACGTCTA
CAAGTCCAGGGTCATGCGAGAAGACCAGATGATCACCCTCTTGGGTATTT
TCCCCACCCTAGCCGCCCAGCTGTTGCTGCGCCGCACTGGGTCAGAGCCG
TGTATCACATTGCCATCGGCCGCAATGCTCCTTGACCCCACAAACCCCCG
CGCCTACGTGGAGCACTTTCTCTGCTTGCTGGGTCTGGGCAAAGCCCGTG
CAAGCGACAGCCGGCCCGACCCGCGCGTGGTGCGAGCCCTGGACATCATC
CTGTTGGTGCACGCCGACCACGAGCTCAACTGCTCCACAGCCGCAGTCCG
TCACCTGACCAGCTCGGGTACGGACGTGTTCACGACAATTGCCGGAGCAA
CCGGCGCGCTTTATGGGCCCTTACACGGTGGGGCGACAGAGGCGGTCCTG
CGCATGCTCCAAGAAATTGGGACGGTGGAGCGCATCCCGGCATTTGTGGA
GGCTGTAAAGGCCAAGAAGCGTAAGCTCATGGGTTTTGGGCATCGCGTGT
ACAAGAATAACGACCCGCGGGCCCAGCTGGTAAGGGAGGTGGCTTACGAG
GTGTTCGACGTCTATGGTGCCGACCCCTTGATCCACCTGGCCACGGCTCT
CGAGGCCGCGGCCCGCTCGGACGATTACTTCGTCGCCCGCAAGCTCTACC
CTAACATCGATTTCTATTCAGGTCTGATTTATAAGGCCATCGGCTTCCCC
GTCGACTATTTTCCCGTGCTGTTCACCATGGGCCGCATGGCGGGCTGGCT
GGCCCACTGGGACGAGCTCTTGGCTGGGCCGTTGGAGGAGCAAAAGATTG
TGCGTCCCCGACAAGTCTACCTTGGTCCCATCGAGCGGCCATACGTTCCG
CTGGATGCACGTGGGGGAGGACACGCGACCGGCTATGATGAGCAAGCGCC
GCTGATGACCTCGTCGATGCGAGCACGGCTGTAACGGCGAGAGTGAGGAA
TAGCGACCAAGTAAAGAACATGTGTGCACATTTAAACTACGTTTTGAAAA
ATCTGCCATTCATGCAAAACTTATTTCATCTCTTTGGTTTTGGCGTCTTT
AAGAGCTGCCGTGTACAGAATCTTGGGCGTAGTATGTATAAACGAATGGG
TGAAATCCGGATGTGCTATTTTTGTGTGGCTCAACCAAGGCCTGACTTTG
ACCTTTCTATTCCAATGTTGCTATTTTCAATCATGCGTAGGAATGAAATA
AACAAATCAGGATGACTGGAGGATGAATGGATGAGTACCAGAGAAGGCGA
GGCAGTGATGCGCGCTGTGCCCATCTGTCGCCGGTATACCACGTATGTAG
TATGTAAATAAACTATAAATAACTAAATAATGAAATAAAATAAATAAATT
AAAAGAAAGGAATAGCGACGTCGACTTCTCTTTCTTACTTCTCACATCTT
CCGATGCATTTTTATATCAGAGCCCTTGCCCTCCATTCTCAAACTTAAGA
TCCTTTATCGGGCGACATTTTTGTGACTCCCATCATCTATGTTCATGCTT
CTTGTCTCGCAGGAAGTATTTCCGGTTCTCCACCACTTAGTCACGCCGGC
TGCCGCCCAAAAGCTGCAAGATGAAGAGGAAAAGGTTAATGATATCAAGG
TAAAGCATGATGCTGGCAATAATGGCCTGCTCAGGGCCAAACCGCTTCGA
CAGCAACCATGTGTCGTACACAATAAGTGCAGAGAACAAGAGAGCGCCAA
ATAAGGAGTAAAAAAACGTCGAGCGCCAGCCCGTCAGCCAAGAAATGAGT
CCCCAAACAATTAAGCCTATCAAACCTGCCATACAAAACCCTCCTAAGAA
GGAGAAGTCCTTGTCACTGTAATAGGTGTAGGCGGTGAGGCCCACAAAGA
TAGCCAGCGTGATGCCAAAAGCCTGCAAGACCAGCTCACCGGATCCCTGA
CGGTAGTATATGGCGCAAATGAGGCCCACCAGAAAGGACTGACAAAGCGT
AAATGCAACAAGCAACACCATGTTCCACGGATGCTTTTGCTTGAAGCAGA
ATAGGCCAATTAGGCAGGCAAAGGACAGGACGAGGGCGAGGGTGAAGAGC
TGGGGCGTGGCAAGGACGAAATCGCTGACGCTGCGGTTGAAACAAAACAG
GCAGGCCACCCCCACCGTAGTGAGCAACTGTATGCTCAAAATTGAATACA
CTTTTCGAAGTAAGGCCAGGCGGATTTGGCCTTGAGTGTTTTCCATGAAC
GAGGAGGGAACATGCTCTGCCACTTGTGCCGCCTCGGGATCATAAAACTC
GTCGCCGCCAGCTTTGGGGTAGGGCTGGGTGGGGAGCTGCTGCTGGTGTT
GCGCATGCGGGTGGTGGGAATAAGTCGCCGGTTGCGGCTGCTGTTGATAG
GCCGGGCAGTAAACCGTGGGCATTTCCTGCGAGGCCACTGGGTAGGCATG
CCGCTGGTAGTAGTACGGGGACGATGATGCATCAGGTGCTTCCACTACGC
CGTGCTCCCCGCGCTTGGGGTCATGATAGGACATTTTTATAAGTCGTATT
ATTATTTAGTGCAATATCTGTGGGGTTCGAGGATGGCGGAGGAGGGAGAA
GAATGCTGCGTTAGAGGAATAGAAAGGATACCTTTGAGGAGATACAACGA
AGGCAATACTGCAGCGCACATCGCACGCCTTCTGACTGAGGAGACACAGA
TCTTGAGATTGATGAATACATTCAGCCAGGCCAAGTACACATGGTGTGTG
AGGGAGGTGGACGGGGAGTGAGCTGGAGGAAGGCAGTCCCGCGGCGTTAT
TTGACGCGGTCTGTGCTCGGTGATCAGCGCAGAATGATGATCGTTCGTCG
GCCGTTGAAAGTGGCGGCCCAGATTGGGGCAGTCAACACTGCCATGCCAG
ACCATGCGCGCACCGCTTGCCATTGGATCAATTGAAATTTACAGTTGACG
GTAATAGAAGAATTTCCAAATCTTCCCTTTCCCTCACGCAACTGAGGTGT
AGGGCATCATTTACTGGCCTCTTTTTCTGAGCCAGCAAAACCTCATCAAG
GCGCCCTGTCAGTGCATCAGTGACAAGTCAGGAAAGTATTGTCCGGAATC
AAACATTATACCAGAAAATAAGCTCGCGTCGACTTGTCGCGAGGAAAGCG
TATCAGCTGAAGGATAGTGACCGAAATGCAAAATAAATTCAGCGCCGCCC
CCCTTCTCTCCTACACACACTTAGAACGAAACCGAAACCGAAGCCCCCAC
CCCTTTTCCTGATGCTCTCCTTGGCAGCAGGTTATCTACGGATCCCGACA
GAGTCCCAAAAATTTCCGTTACGGAAAGCATACCAAAGGTTAAAACTAAT
TGGAGTCCATGTTCATTTTGCCATCCCGTTCTCACAAGTTGTTTTGACTA
ATTTAGGGCTATGGCGTGACATGATTGAAAGTTGATGGAAGACAAGGAGG
GATAAGTAAACGGTGCTTTTACAAAAGCTGCTCTTCATGAGATATTGAAC
CCATACGGGCCAGGAGTCATCAATTCGAAATGTGACTCGATGGCACTGGT
AAATGATTGTGATCTACCTGCAGGGAATGGTTCCATATCGTGAGTGTGAA
CTCGACATGGAAAGTCGTTGAACGCGTGAACAACCCTGCCGCCTGCGCGA
CCTTTTGACGGACTTGCAGGGTAGAGTTAGTATTCATGGTAAAATTCTTA
CACTTCAAGGACAAAGCGGTTTAAGAAGTTGCGTGTAATACACCAGGGGT
ATACAAGGATAGTTCCACAAGGAAAAAATAAGCCAGAAAAGGTTGG
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protein sequence of NO19G01880.1

>NO19G01880.1-protein ID=NO19G01880.1-protein|Name=NO19G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MSNSVVEADQLVILEYRGQRHRLPVKNGCIRAIDLKSASGLMSYDPGYMN
TAVCTSHITYIDGERGILRYRGYPIEQLAKYSSYLEVAFLLLYGELPSAP
QLEHFCARVYQRQAAIHTDLVALLQTIRHDAHSMTSIVSTLAAFSALRAD
ANPALAGQDVYKSRVMREDQMITLLGIFPTLAAQLLLRRTGSEPCITLPS
AAMLLDPTNPRAYVEHFLCLLGLGKARASDSRPDPRVVRALDIILLVHAD
HELNCSTAAVRHLTSSGTDVFTTIAGATGALYGPLHGGATEAVLRMLQEI
GTVERIPAFVEAVKAKKRKLMGFGHRVYKNNDPRAQLVREVAYEVFDVYG
ADPLIHLATALEAAARSDDYFVARKLYPNIDFYSGLIYKAIGFPVDYFPV
LFTMGRMAGWLAHWDELLAGPLEEQKIVRPRQVYLGPIERPYVPLDARGG
GHATGYDEQAPLMTSSMRARL*
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Synonyms
Publications