NO19G01870, NO19G01870 (gene) Nannochloropsis oceanica

Overview
NameNO19G01870
Unique NameNO19G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2725
Alignment locationchr19:553735..556459 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:553735..556459 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR025640DUF4339
IPR000504RRM_dom
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Homology
BLAST of NO19G01870 vs. NCBI_GenBank
Match: EWM23697.1 (rna binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 672.2 bits (1733), Expect = 1.500e-189
Identity = 367/600 (61.17%), Postives = 428/600 (71.33%), Query Frame = 0
Query:    8 VGERMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSV---GAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYTKAVFRAERPHATT----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAEFGDELDNQELPPEFQLEVAPE 601
            V ER+WNYLAPSGDKKGPFPES LIRML+++LPGLDTSS+CWTPGM++WRP+GQMTNF +VLEAE AAWYY+DK+G+QQGP++ K++A LL  GE+DGLSLVWHQ+LAGGW+PLSEV+ELRQ++RL M P                          D    +DERQVF  +EMP  S+A  S   K       VKQSYVADDGTKYRLN  TNEWEE  S  XXXXXXXXXXXXXXXXX       S     ++          GG                 EGWD+ASNKWVY+TGLPSDAT EELE+HFKQVGILA+DPETQ+PR+K+YRDP+GAPKGDASVA+VRPESVELAVEILN G+LRPGWP+ ITKAVF QK+  +   E     PVK+R++NEAK KVARAA KQALSW+EADD+GLGGKALRIVVVKNMF P+ C++  F+E+L++DLE EC++LGPLEKMT+FERHPEGV+VIKFGTAFAAEQCVKLMNGRFFAGRKLQS YWDGSTDYTKA ++  +    T    G                                   RLA+FG ELDNQ+LP EFQLEVA E
Sbjct:    8 VSERVWNYLAPSGDKKGPFPESTLIRMLVKKLPGLDTSSFCWTPGMEEWRPIGQMTNFSSVLEAESAAWYYLDKNGQQQGPTDVKNVADLLHDGEVDGLSLVWHQDLAGGWRPLSEVDELRQLLRLFM-PSELGEEQSDKVQNIEPGSGAKAGGGADLNITMDERQVFQAEEMPGMSMAVTSTNKKTDDG--GVKQSYVADDGTKYRLNIDTNEWEEVESDDXXXXXXXXXXXXXXXXXSQQNCAASSTEYGTLERRKRKKKNRGG-----------------EGWDRASNKWVYITGLPSDATAEELEAHFKQVGILAIDPETQRPRIKMYRDPSGAPKGDASVAFVRPESVELAVEILNEGMLRPGWPLNITKAVFHQKA--STAGEKSKTEPVKKRRLNEAKAKVARAAAKQALSWSEADDSGLGGKALRIVVVKNMFEPSDCESAEFIEDLRKDLEIECTALGPLEKMTIFERHPEGVIVIKFGTAFAAEQCVKLMNGRFFAGRKLQSFYWDGSTDYTKANYKDRQTTTRTSWDHGKVTFISSEGNDRAYEGREPTEFTLAEDGEDTEEEKRLADFGAELDNQDLPEEFQLEVASE 585          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: CBJ28191.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 289.7 bits (740), Expect = 2.100e-74
Identity = 227/573 (39.62%), Postives = 299/573 (52.18%), Query Frame = 0
Query:   12 MWNYL-APSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEG-------------------------------------------------------WD-KASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQA-PGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            MW YL   +  + GP  ES+++++L  R+         W+ GM +W+P+ Q+  F+   E     W Y+ ++ EQ+GP  A  ++ LL+ GE+DG+++ W   + G WKPL EV ELR +++                            XXX                                         ++ADDGTK+  +    +W+E    XXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXX                                                         W+ KA+N WVYV GLP D  VEE+  HF + GI+A DP TQQP++KIY+D  G PKGD SV Y + ESVE+A+ +L+ G LRPG  + ++KAVFQQK    D          KR KVN+A++KVARAA +QALSWAE DDTG     L+IVVV+NMFHP+  +A   F EEL+ DL  E   LGP+EK+TVF ++ +G VV+KFGTA+AA +CVK+ +GRFF GRKL   +WDG T+YT
Sbjct:   66 MWMYLDGANPTQHGPLTESLMLKLL--RIGTAHKDMMAWSQGMSEWQPLAQIEAFRETSELAATPWLYLGENSEQRGPVSAAALSRLLRQGEVDGMTMAWTTGM-GDWKPLGEVSELRPLLQ---------------------------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMADDGTKFAWDEEKGDWKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLQWNKKATNLWVYVKGLPVDIEVEEVREHFSKCGIIATDPLTQQPKIKIYKDDEGHPKGDGSVCYAKAESVEMAINVLHEGQLRPGVTIEVSKAVFQQKGQSFDN--------TKRLKVNDARVKVARAAAEQALSWAENDDTGATKGGLKIVVVENMFHPSDFEANERFGEELEADLLAEGEKLGPVEKITVFAKNNKGPVVVKFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 600          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: ETK90297.1 (hypothetical protein L915_05920 [Phytophthora parasitica] >ETL43709.1 hypothetical protein L916_05855 [Phytophthora parasitica] >ETL96875.1 hypothetical protein L917_05745 [Phytophthora parasitica] >ETM50034.1 hypothetical protein L914_05863 [Phytophthora parasitica] >ETP20182.1 hypothetical protein F441_06054 [Phytophthora parasitica CJ01A1] >ETP48124.1 hypothetical protein F442_06075 [Phytophthora parasitica P10297])

HSP 1 Score: 253.4 bits (646), Expect = 1.700e-63
Identity = 193/533 (36.21%), Postives = 284/533 (53.28%), Query Frame = 0
Query:   12 MWNYL-APSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYV-------DKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQ-TSVGAPPSGE-------GGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVN-EAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            +W YL A +G +KGP    I+ ++L + +  +      WT  + +W  +  +  F++ L    A WYY+        K+  + GP+  + +  L   GE+DG++LVW Q L  GWKP+ EV  L++ ++                                 ++V  E+QVF  ++  T +L A               + YV D  +K  + P     EE  S               XXXXXXXXXX S   Q  S+G   +G+         XXXXXXXXXXXXXXXXX       N WVYV GLP D TV+E+  HF + G++  D  T +PR+K+Y++  +G   GD SV Y++  SVELAV++L+   +RP WP+ ++ AVFQQK           G  VKR+K+  +++ ++     ++ALSW E +     G  LRIVV+K+MF P + +   +  ELQED+ GECS +G + K+T+F +H +GVVVIKF ++ +A +CV++MNGRFFAGRKL+  +WDG TDYT
Sbjct:    5 LWLYLDAVTGQQKGPVSAPIIKKLLRKGV--IQPQQLVWTQRLSEWTAIASVEPFESYLRVWTAVWYYMAEDPTNPSKESVRTGPNTTQQLVQLFVDGEVDGMTLVWSQQL-DGWKPIGEVPSLKEFLQ-----------------EANEDLDREAELKEQASNVPIEQQVF--EKESTDALVAEDG------------KRYVFDAESKTYVTPEDKIEEELASLQEAMREANAEKQGGXXXXXXXXXXRSTDNQKVSIGEEAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTWVYVNGLPLDVTVQEVHDHFAKCGVIQPDIATGKPRIKLYQNKESGGLNGDGSVCYMKEASVELAVQLLDKSQIRPDWPIDVSPAVFQQKE----------GDFVKRKKLKIDSRARIKMFEKEKALSWNEGEVNEPAG--LRIVVIKHMFTPAEIEDEAYETELQEDIHGECSKIGEVTKITLFAKHVDGVVVIKFASSGSAARCVEIMNGRFFAGRKLECGFWDG-TDYT 490          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: XP_008891458.1 (hypothetical protein PPTG_02190 [Phytophthora parasitica INRA-310] >ETN22172.1 hypothetical protein PPTG_02190 [Phytophthora parasitica INRA-310] >KUF81740.1 HIV Tat-specific factor 1 [Phytophthora nicotianae])

HSP 1 Score: 250.8 bits (639), Expect = 1.100e-62
Identity = 192/533 (36.02%), Postives = 283/533 (53.10%), Query Frame = 0
Query:   12 MWNYL-APSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYV-------DKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQ-TSVGAPPSGE-------GGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVN-EAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            +W YL A +G +KGP    I+ ++L + +  +      WT  + +W  +  +  F++ L    A WYY+        K+  + GP+  + +  L   GE+DG++LVW Q L  GWKP+ EV  L++ ++                                 ++V  E+QVF  ++  T +L A               + YV D  +K  + P     EE  S               XXXXXXXXXX S   Q  S+G   +G+         XXXXXXXXXXXXXXXXX       N WVYV GLP D TV+E+  HF + G++  D  T +PR+K+Y++  +    GD SV Y++  SVELAV++L+   +RP WP+ ++ AVFQQK           G  VKR+K+  +++ ++     ++ALSW E +     G  LRIVV+K+MF P + +   +  ELQED+ GECS +G + K+T+F +H +GVVVIKF ++ +A +CV++MNGRFFAGRKL+  +WDG TDYT
Sbjct:    5 LWLYLDAVTGQQKGPVSAPIIKKLLRKGV--IQPQQLVWTQRLSEWTAIASVEPFESYLRVWTAVWYYMAEDPTNPSKESVRTGPNTTQQLVQLFVDGEVDGMTLVWSQQL-DGWKPIGEVPSLKEFLQ-----------------EANEDLDREAELKEQASNVPIEQQVF--EKESTDALVAEDG------------KRYVFDAESKTYVTPEDKIEEELASLQEAMREANAEKQGGXXXXXXXXXXRSTDNQKVSIGEEAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTWVYVNGLPLDVTVQEVHDHFAKCGVIQPDIATGKPRIKLYQNKESDGLNGDGSVCYMKEASVELAVQLLDKSQIRPDWPIDVSPAVFQQKE----------GDFVKRKKLKIDSRARIKMFEKEKALSWNEGEVNEPAG--LRIVVIKHMFTPAEIEDEAYETELQEDIHGECSKIGEVTKITLFAKHVDGVVVIKFASSGSAARCVEIMNGRFFAGRKLECGFWDG-TDYT 490          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: ETI50419.1 (hypothetical protein F443_06040 [Phytophthora parasitica P1569] >ETO79154.1 hypothetical protein F444_06095 [Phytophthora parasitica P1976])

HSP 1 Score: 250.0 bits (637), Expect = 1.900e-62
Identity = 197/525 (37.52%), Postives = 285/525 (54.29%), Query Frame = 0
Query:   12 MWNYL-APSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYV-------DKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVN-EAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            +W YL A +G +KGP    I+ ++L + +  +      WT  + +W  +  +  F++ L    A WYY+        K+  + GP+  + +  L   GE+DG++LVW Q L  GWKP+ EV  L++ ++                                 ++V  E+QVF  ++  T +L A     KR       K     +D  +  L  L     EA +  XXXXXXXXXXXXXXXXXX     G                 XXXXXXXXXXXXXXXXX       N WVYV GLP D TV+E+  HF + G++  D  T +PR+K+Y++  +G   GD SV Y++  SVELAV++L+   +RP WP+ ++ AVFQQK           G  VKR+K+  +++ ++     ++ALSW E +     G  LRIVV+K+MF P + +   +  ELQED+ GECS +G + K+T+F +H +GVVVIKF ++ +A +CV++MNGRFFAGRKL+  +WDG TDYT
Sbjct:    5 LWLYLDAVTGQQKGPVSAPIIKKLLRKGV--IQPQQLVWTQRLSEWTAIASVEPFESYLRVWTAVWYYMAEDPTNPSKESVRTGPNTTQQLVQLFVDGEVDGMTLVWSQQL-DGWKPIGEVPSLKEFLQ-----------------EANEDLDREAELKEQASNVPIEQQVF--EKESTDALVAED--GKRYVFDAESKTYVTPEDKIEEELASLQEAMREANAEKXXXXXXXXXXXXXXXXXXQKVSIGE--EAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTWVYVNGLPLDVTVQEVHDHFAKCGVIQPDIATGKPRIKLYQNKESGGLNGDGSVCYMKEASVELAVQLLDKSQIRPDWPIDVSPAVFQQKE----------GDFVKRKKLKIDSRARIKMFEKEKALSWNEGEVNEPAG--LRIVVIKHMFTPAEIEDEAYETELQEDIHGECSKIGEVTKITLFAKHVDGVVVIKFASSGSAARCVEIMNGRFFAGRKLECGFWDG-TDYT 490          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: GAX99000.1 (Hypothetical protein PINS_006839 [Pythium insidiosum])

HSP 1 Score: 240.0 bits (611), Expect = 1.900e-59
Identity = 198/531 (37.29%), Postives = 283/531 (53.30%), Query Frame = 0
Query:    6 KLVGERMWNYLAP-SGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYY-VDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNE------WEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPT-GAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVN-EAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            K   E +W Y+ P SG ++GP P  +L R++  R   +      WT  +++W P G    F++        WYY +D +  QQGP   K + AL   GEIDGL+LVW +++   W P+ E+  L++ V                                  A+   ERQ    ++   R  A        +   L  K+    ++     L  L +E       +E+        XXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXX      SN WVYV GLP D T+EE+  HF + G++  D  T  PR+K+YR+   G  KGDASV +++  SVELAV++L+   +RP W + ++ AVF+QK          G   VK +K   +++ +V R   ++ALSW E DD    G  LRIVV+K++F P + +   +  EL++++E ECS +G + K+T+F +H +GVVV+KF +A +A +C+++MNGRFFAGRKL+S +WDG TDYT
Sbjct:   10 KTAAEELWMYVDPASGQQRGPLPVRLLKRLI--RKGHVTPQHLVWTQRLNEWTPAGTTEPFESYCRVWFTFWYYMLDGNPTQQGPVNTKDLMALFLDGEIDGLTLVWTKDME-QWTPMGELPSLKEFVH--------------------------------EANEDHERQEEVLEQQ--RQAAQEDQVFDDAYVLLDTKKWITPEEKIAEDLEALRDEKLAARQSDESPELAELQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSNTWVYVNGLPLDVTLEEVRDHFAKCGVIQTDLVTGAPRIKLYRNKNLGGLKGDASVCFMKEASVELAVQLLDKSQIRPEWTIDVSPAVFEQK----------GAEYVKHKKPRLDSRARVKRLEQEKALSWNEGDDGDRAG--LRIVVIKHLFTPEEIEDDAYELELKQEIEEECSKMGEITKITLFSKHVDGVVVVKFASAGSAAKCMEVMNGRFFAGRKLESHFWDG-TDYT 490          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: OQR83166.1 (hypothetical protein ACHHYP_15015 [Achlya hypogyna])

HSP 1 Score: 235.7 bits (600), Expect = 3.700e-58
Identity = 170/525 (32.38%), Postives = 265/525 (50.48%), Query Frame = 0
Query:   11 RMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMT------NFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQ-NLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVN-EAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            + W Y+  SG +KGP  E++L R+L R +  +   ++ W+P + +  P  Q+           VL    A WYY D   +QQGP     ++     G++DGL+LVW    L   W PL +VE L++V++ +                               A +  E+Q+      PT  +   +A  ++         S++A++G+++  +    +W                                                XXXXXXXXXXXXXXXXX         W+YV GLP DATV+E+  HF + G++  D ET +P++K+YR+  TGA  GDA+V +++  SVELA+++L+   LRP WP+ +  A F QK          G   V R+K+  ++K KV +  ++QALSW  AD+     + LRIVV+K+MF P +   P   +EL++D++ EC ++G + ++  FERHP GVV +++  A AAE+C+ +M+GRFF GRK+  +YWDG T+YT
Sbjct:    4 KKWMYIDSSGSQKGPLDEAVLKRLLRRGM--VTGDNFVWSPELAERMPSWQLAKETPIFRTTCVLWQALAQWYYYDHLKQQQGPVTTNDLSTKFLDGDVDGLTLVWSSCQLVEAWTPLGQVEVLKEVLQEI-----------------------NDEVERKEALLATEKQL-----DPTTQVMDVAAEPRK---------SFMAENGSEFIYDAEMRKW--LTPEEKIEEELAMLRDEVADVQGTHETFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKQKTWIYVNGLPLDATVQEVHDHFAKCGVIQKDLETDEPKIKLYRNKETGALNGDAAVCFMKEPSVELAIQLLDKVDLRPKWPLDVKVAEFAQK----------GDAFVPRKKIKLDSKAKVKKYQMEQALSWGAADE----DEGLRIVVLKHMFQPEEFDDPEAGQELKDDIKAECETIGDVSRILFFERHPLGVVQVRYQQAEAAEKCISIMHGRFFGGRKIDCAYWDG-TNYT 472          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: XP_024572868.1 (rna-binding protein [Plasmopara halstedii] >CEG36499.1 rna-binding protein [Plasmopara halstedii])

HSP 1 Score: 231.5 bits (589), Expect = 6.900e-57
Identity = 172/525 (32.76%), Postives = 259/525 (49.33%), Query Frame = 0
Query:   12 MWNYL-APSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYV-------DKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVN-EAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            +W YL A +G++KGP P  I+ ++L + L  +      WT  + +W+ +  +  F A   A    WYY+        K+  + GP   + +  L   G++DG++LVW Q +   WKP+ +V  L++ ++                                 A V  E QVF  +       A A  A    R        YV D  +K  + P     +E  S                          +    T++G   S +       XXXXXXXXXXXX         WVYV GLP D T++E+  HF + G++  D  + +PR+K+Y +  +G   GD S+ Y++  SVELAV++L+   +RP WP+ ++ AVFQQK           G  VKR+KV  + + K+     ++ALSW E +     G   RIVV+K+MF P++ +   + +EL++D+  ECS LG + K+T+F +  +GVVVIKF ++ +A QCV LMNGRFFAGRKL+ S+WDG TDYT
Sbjct:    5 LWLYLDAVTGEQKGPVPSPIIKKLLRKGL--IQPQQLVWTQRLSEWKAIVSVEPFAAYNRAWRTMWYYMAENLTDTSKEVMRAGPVLTQQLVELFTNGDVDGMTLVWSQEV-DDWKPIGDVPLLKEFLQ-----------------EANDEIDRQSELKEQIADVPIEDQVFENES------ADAFIAEDGKR--------YVFDAESKMYVTPEIKIEDELAS-----------LREAVADTIAETQTDTTNAATTIG--ESTDHAEMNASXXXXXXXXXXXXXXXXXXXXXWVYVNGLPLDVTLQEVHDHFAKCGVIQTDIVSGEPRIKLYENKESGGLNGDGSICYMKEASVELAVQLLDKSQIRPEWPIDVSPAVFQQKE----------GEFVKRKKVKIDTRAKIRMFEKEKALSWNEGEINEPTG--FRIVVIKHMFTPSEIEDESYEKELRDDIYDECSKLGEVSKITLFAKREDGVVVIKFTSSGSAAQCVDLMNGRFFAGRKLECSFWDG-TDYT 469          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: OQS06164.1 (hypothetical protein THRCLA_01776 [Thraustotheca clavata])

HSP 1 Score: 231.1 bits (588), Expect = 9.000e-57
Identity = 163/524 (31.11%), Postives = 262/524 (50.00%), Query Frame = 0
Query:   11 RMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMT------NFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQ-NLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            + W Y+   G++KGP  E +L R+L R +  +   +Y W+P + +  P  QM           VL      WYY D+D  Q+GP     +  L   GE+DGL+LVW    L   W P+ +V  L++V++ +                                  +D + +   ++                   +S ++SY+A++G ++  +  T +W                                  + T    P      XXXXXXXXXXXXXXXXX         W+Y+ GLP D T++E+ +HF + G++  D ET  P++K+YR+  TG   GD ++ +++  SVELA+++L+   +RP WP+ +  A F QK  G++ V      P K+ K+ ++K KV +  ++QALSW  AD+     + LRIVV+K+MF P     P   +EL++D++ EC +LG + K+T FE+H  GVV IK+ +  +A +C++LM+GRFF G+K++  YWDG T+Y+
Sbjct:    9 KKWLYVDTQGNQKGPLDEQVLKRLLRRGI--VQGENYVWSPELAEEMPTWQMAKDTPIFQTACVLWQSTPQWYYYDQDKVQKGPLTTTELTNLFLDGEVDGLTLVWSNCKLVDEWTPMGQVNVLKEVLQEI------------------NDEMEKKEALMQTEKQIDPKNIVMDED-------------------ISARKSYLAENGKEFIYDSETRKWLTPEEKIEDDLAILRDEVNEMTSRNESFEDD---KPTLESEPAPRXXXXXXXXXXXXXXXXXXXXXXVASKQKTWIYINGLPLDVTIDEVHTHFSKCGVIQKDLETDTPKIKLYRNKDTGQLNGDGAICFMKEPSVELAIQLLDKVDIRPKWPLDVKVAEFTQK--GDEFV------PRKKAKL-DSKAKVKKFQMEQALSWGAADEE----EGLRIVVLKHMFTPNDFGDPVAGQELKDDIKAECETLGAITKITFFEQHVAGVVQIKYHSPESATKCIELMHGRFFGGKKIECEYWDG-TNYS 476          
BLAST of NO19G01870 vs. NCBI_GenBank
Match: XP_008608057.1 (hypothetical protein SDRG_04173 [Saprolegnia diclina VS20] >EQC38465.1 hypothetical protein SDRG_04173 [Saprolegnia diclina VS20])

HSP 1 Score: 230.3 bits (586), Expect = 1.500e-56
Identity = 170/525 (32.38%), Postives = 264/525 (50.29%), Query Frame = 0
Query:   11 RMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMT------NFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQ-NLAGGWKPLSEVEELRQVVRLLMRPXXXXXXXXXXXXXXXXXXXXXXXXXXDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGXXXXXXXXXXXXXXXXXXXXXXXXGSMVRQTSVGAPPSGEGGXXXXXXXXXXXXXXXXXEGWDKASNK-WVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRD-PTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYT 527
            + W Y+   G +KGP  E +L R+L R L  +   +Y W+P + +  P  Q+           VL      WYY D+  +Q+GP     ++ L   G+IDGL+LVW    L   W P+ +V+ L++V++ +                                  V+ ++     E   + L  +S     S SA   + S++ADDG ++  +    +W                                                XXXXXXXXXXXXXXXXX  W  +  K W+Y+ GLP DAT++E+  HF + G++  D ET +P++K+YR+  +GA  GDASV +++  SVELA+++L+   LRP WP+ +  A F QK        G    P K+ K+ +++ KV +  ++QALSW  AD+     + LRIVV+K+MF P          EL++D++ EC +LG + K+T F++HP GVV +K+    +A+ CV+ M+GRFF+GRK++ +YWDG T+YT
Sbjct:   14 KKWLYVDGQGAQKGPLDEQVLKRLLRRGL--VTGDNYVWSPELAELLPTWQLAKETLVFGTTCVLWQTLPQWYYYDQAKQQKGPVTTTDLSTLFLDGDIDGLTLVWSSAQLVSAWTPMGQVDVLKEVLQEI-------------------------------NDEVERKEALLATE---KKLDPSSLVMDSSASA---RTSFLADDGKEFIYDSEMRKWLTPEEKIEEELAMLRDEVDDVKASNDMFDD----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVASKQKTWIYINGLPLDATIQEVHDHFAKCGVIQRDLETDEPKIKLYRNKDSGALNGDASVCFMKEPSVELAIQLLDKVDLRPNWPLDVKVAEFAQK--------GDAFVPRKKAKL-DSRAKVKKFQMEQALSWGAADE----DEGLRIVVLKHMFTPADFDDVEAGNELKDDIKAECETLGDVTKITFFDKHPLGVVQVKYALPESAQSCVERMHGRFFSGRKIECAYWDG-TNYT 481          
The following BLAST results are available for this feature:
BLAST of NO19G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23697.11.500e-18961.17rna binding domain protein [Nannochloropsis gadita... [more]
CBJ28191.12.100e-7439.62conserved unknown protein [Ectocarpus siliculosus][more]
ETK90297.11.700e-6336.21hypothetical protein L915_05920 [Phytophthora para... [more]
XP_008891458.11.100e-6236.02hypothetical protein PPTG_02190 [Phytophthora para... [more]
ETI50419.11.900e-6237.52hypothetical protein F443_06040 [Phytophthora para... [more]
GAX99000.11.900e-5937.29Hypothetical protein PINS_006839 [Pythium insidios... [more]
OQR83166.13.700e-5832.38hypothetical protein ACHHYP_15015 [Achlya hypogyna... [more]
XP_024572868.16.900e-5732.76rna-binding protein [Plasmopara halstedii] >CEG364... [more]
OQS06164.19.000e-5731.11hypothetical protein THRCLA_01776 [Thraustotheca c... [more]
XP_008608057.11.500e-5632.38hypothetical protein SDRG_04173 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004527NSK004527Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01870.1NO19G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567978gene_7589Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g24gene6769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01870.1NO19G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01870 ID=NO19G01870|Name=NO19G01870|organism=Nannochloropsis oceanica|type=gene|length=2725bp
CCCGGTAGTATAGTGGTCAGAATCCCTCCCTGTCACGGAGGAGGCCGGGG
TTAAGACACTTTCCGCCTCTTCACAAGAGTCCGAGGTGGATGTCTCCCGT
TCGATTCCCCGCCGAGGAGATGAACAGCTTTGTTTTTGACTTCCGGTAGA
GTTACATTTCTCGTCTCTCTCCATTTTTTTCTCGTTCCTGCATCTTTTCA
TTCATCTGAGTACGTAGCGCGCTAGATCACTCCTGGCTTTACCTATGTAT
TTCCCAATCCAGTTCTTCATGGAGCGACAGCAACACATTCAAACAAGTTG
TGAAATAATGGCCCATACACCTGCAGATTGAGGCGAATTATGGAGTTATA
CACTTCTCATAAAAAAGCATTCTCGCACCTCTCACCTTCCCCTCTCACCT
ATCCACACACGTCCATTCTTTTAGGGTTTTGATGCTTTGCTGCCCGGGGA
CTCTGCTTGCGCCTTCCCCGCGGGTATCCTTTTCGCCGCCGTGCTCACCA
TACCCAGTTCATCACATCATCCGGATTCCTCTGCTCACCAACGACACCAA
TATAAATCATAGAAACAAGCATGACAGAGGCGGAGAAGCTGGTCGGGGAG
CGTATGTGGAACTATTTGGCGCCTTCTGGGGACAAGAAGgtgcgttgttt
tgagcacttcctttgtccgtcttggtggggggacggtaatggtgtaggca
aggcctctacaggcagcgacaacctcagaagccaaaaatggacttgggca
aaagcttaatgccaggcgtatagtggctgtggtggcgcttgctgcctttc
cacaatgttcctgtagcccatatcactggccctcatcatcctgctcactg
ctcgtccctcgctctgtcttccaacccttctccactcacgaccactcacg
acccttctccactcacgactcccatgcaaatcatccatttaataaagGGC
CCCTTCCCCGAGTCCATTCTCATACGAATGCTGTTGCGGAGGCTGCCTGG
ACTAGATACCTCGTCGTATTGCTGGACACCTGGCATGGACGACTGGCGGC
CGGTGGGGCAAATGACAAATTTTAAGGCCGTCCTCGAGGCGGAGGGCGCG
GCCTGGTATTATGTGGACAAGGACGGGGAGCAGCAAGGCCCATCGGAGGC
CAAACATATGGCAGCACTGCTGCAAGGTGGCGAAATTGATGGCTTGAGCT
TGGTCTGGCACCAGAATTTGGCTGGAGGGTGGAAGCCTCTCTCGGAGGTA
GAGGAGCTCCGGCAAGTGGTGCGCCTGTTGATGCGGCCGGAAGAAGATGA
AGATGGGGAAGGCAGTGAACAAAAAAGAGAGGAGGAGGGAGAGGATAGTG
GAGGGGGTAGCGGTAGGGATGGTGCGTCCGTGGTGGACGAGCGACAGGTA
TTTTACGGAGACGAGATGCCCACCCGCTCGCTTGCCGCAGCCTCGGCTGC
TGCGAAGAGGTCAAGGAGCGCTCTTAGCGTGAAGCAATCGTACGTGGCAG
ATGATGGCACAAAGTATCGGCTGAATCCTCTGACGAATGAGTGGGAGGAG
GCTGGTTCGGGAGAGGAGAGTGGGGAGGGTGGAGAGGAAGGTGAAGAGGA
AGGCGAGGGAGAGGAAAACGAGGAGGAGGGGAACGGCAGCATGGTGCGAC
AGACCTCGGTGGGGGCACCTCCAAGCGGCGAGGGCGGGAATGTATCAAAG
AGGAAGAAGTCAAAGAAGAAGAAGAAGAATCGTGGTGGAGAGGGGTGGGA
CAAGGCGTCCAACAAGTGGGTGTACGTGACGGGCCTGCCCTCGGACGCGA
CGGTTGAGGAGCTAGAATCGCATTTCAAGCAGGTCGGCATCTTGGCGGTG
GACCCCGAGACACAGCAACCTCGTGTGAAGATCTATCGTGACCCCACGGG
CGCACCGAAGGGCGATGCTTCGGTGGCGTACGTCCGGCCCGAGTCAGTGG
AACTGGCCGTGGAGATTCTGAATGGGGGCTTGCTCCGACCAGGCTGGCCC
ATGACCATCACCAAGGCCGTATTTCAGCAAAAGTCAGTTGGTAATGATGG
TGTGGAGGGAGGTGGAGGAGGACCCGTAAAGCGGCGGAAGGTAAATGAAG
CCAAAATCAAAGTGGCGCGGGCGGCTGTCAAACAGGCACTTTCTTGGGCC
GAGGCGGACGATACGGGATTAGGGGGCAAAGCACTGCGCATCGTGGTGGT
AAAGAACATGTTTCATCCCACTCAGTGCCAGGCGCCGGGATTTGTGGAGG
AGCTGCAGGAGGATTTGGAAGGGGAATGCTCCTCGTTGGGACCGCTAGAG
AAGATGACTGTATTTGAGAGGCACCCGGAGGGGGTGGTTGTCATCAAGTT
TGGCACGGCCTTCGCGGCGGAGCAGTGTGTCAAGCTGATGAACGGTCGCT
TTTTTGCCGGACGTAAGCTGCAGTCGTCCTACTGGGACGGTAGCACTGAC
TACACCAAGGCAGTTTTCCGAGCCGAGAGGCCGCATGCGACCACGGGTGC
CGAGGAAGAAGGGGGTGGTCAAGGAGAGGAGGAGGGTAGTGGCGAGGCGG
GGAGTACCTTTGTATTCACTACAGAGGACGAGGAGGCGGCGGAGGAGGAT
AGGCGGCTGGCGGAGTTTGGGGACGAGCTCGACAACCAGGAGCTGCCACC
AGAGTTTCAACTGGAGGTGGCGCCTGAGTAAGCAGGGAGCCATGTAAAGG
GAAAAGAAGCATGCTAATAGTAATT
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protein sequence of NO19G01870.1

>NO19G01870.1-protein ID=NO19G01870.1-protein|Name=NO19G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MTEAEKLVGERMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWT
PGMDDWRPVGQMTNFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQG
GEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPEEDEDGEGSEQKR
EEEGEDSGGGSGRDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALS
VKQSYVADDGTKYRLNPLTNEWEEAGSGEESGEGGEEGEEEGEGEENEEE
GNGSMVRQTSVGAPPSGEGGNVSKRKKSKKKKKNRGGEGWDKASNKWVYV
TGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPTGAPKGDASVA
YVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPV
KRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQC
QAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQC
VKLMNGRFFAGRKLQSSYWDGSTDYTKAVFRAERPHATTGAEEEGGGQGE
EEGSGEAGSTFVFTTEDEEAAEEDRRLAEFGDELDNQELPPEFQLEVAPE
*
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Synonyms
Publications