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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:553735..556459 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01870.1 vs.
Match: EWM23697.1 (rna binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 714.9 bits (1844), Expect = 2.100e-202 Identity = 382/598 (63.88%), Postives = 459/598 (76.76%), Query Frame = 0
Query: 8 VGERMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWTPGMDDWRPVGQMTNFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPEEDEDGEGSEQKREEEGEDSGGGSGRDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVKQSYVADDGTKYRLNPLTNEWEEAGSGEESGEGGEEGEEEGEGEENEEEGNGSMVRQTSVGAPPSGEGGNVSKRKKSKKKKKNRGGEGWDKASNKWVYVTGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPTGAPKGDASVAYVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCQAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVKLMNGRFFAGRKLQSSYWDGSTDYTKAVFRAERPHATTGAEEEG-----GGQGEEEGSGEAGSTFVFTTEDEEAAEEDRRLAEFGDELDNQELPPEFQLEVAPE 601
V ER+WNYLAPSGDKKGPFPES LIRML+++LPGLDTSS+CWTPGM++WRP+GQMTNF +VLEAE AAWYY+DK+G+QQGP++ K++A LL GE+DGLSLVWHQ+LAGGW+PLSEV+ELRQ++RL M P E + + + + E G + G G D +DERQVF +EMP S+A S K VKQSYVADDGTKYRLN TNEWEE S +ES E E E+ +EGN +Q A S E G + +R K+KKKNRGGEGWD+ASNKWVY+TGLPSDAT EELE+HFKQVGILA+DPETQ+PR+K+YRDP+GAPKGDASVA+VRPESVELAVEILN G+LRPGWP+ ITKAVF QK+ + E PVK+R++NEAK KVARAA KQALSW+EADD+GLGGKALRIVVVKNMF P+ C++ F+E+L++DLE EC++LGPLEKMT+FERHPEGV+VIKFGTAFAAEQCVKLMNGRFFAGRKLQS YWDGSTDYTKA ++ +R T + + G +G + T ED E EE++RLA+FG ELDNQ+LP EFQLEVA E
Sbjct: 8 VSERVWNYLAPSGDKKGPFPESTLIRMLVKKLPGLDTSSFCWTPGMEEWRPIGQMTNFSSVLEAESAAWYYLDKNGQQQGPTDVKNVADLLHDGEVDGLSLVWHQDLAGGWRPLSEVDELRQLLRLFM-PSELGEEQSDKVQNIEPGSGAKAGGGADLNITMDERQVFQAEEMPGMSMAVTSTNKKTDDG--GVKQSYVADDGTKYRLNIDTNEWEEVESDDES---------EDEMEKVNQEGNDEPSQQNC--AASSTEYGTLERR---KRKKKNRGGEGWDRASNKWVYITGLPSDATAEELEAHFKQVGILAIDPETQRPRIKMYRDPSGAPKGDASVAFVRPESVELAVEILNEGMLRPGWPLNITKAVFHQKA--STAGEKSKTEPVKKRRLNEAKAKVARAAAKQALSWSEADDSGLGGKALRIVVVKNMFEPSDCESAEFIEDLRKDLEIECTALGPLEKMTIFERHPEGVIVIKFGTAFAAEQCVKLMNGRFFAGRKLQSFYWDGSTDYTKANYK-DRQTTTRTSWDHGKVTFISSEGNDRAYEGREPTEFTLAEDGEDTEEEKRLADFGAELDNQDLPEEFQLEVASE 585
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01870.1 ID=NO19G01870.1|Name=NO19G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2417bp
CCCGGTAGTATAGTGGTCAGAATCCCTCCCTGTCACGGAGGAGGCCGGGG
TTAAGACACTTTCCGCCTCTTCACAAGAGTCCGAGGTGGATGTCTCCCGT
TCGATTCCCCGCCGAGGAGATGAACAGCTTTGTTTTTGACTTCCGGTAGA
GTTACATTTCTCGTCTCTCTCCATTTTTTTCTCGTTCCTGCATCTTTTCA
TTCATCTGAGTACGTAGCGCGCTAGATCACTCCTGGCTTTACCTATGTAT
TTCCCAATCCAGTTCTTCATGGAGCGACAGCAACACATTCAAACAAGTTG
TGAAATAATGGCCCATACACCTGCAGATTGAGGCGAATTATGGAGTTATA
CACTTCTCATAAAAAAGCATTCTCGCACCTCTCACCTTCCCCTCTCACCT
ATCCACACACGTCCATTCTTTTAGGGTTTTGATGCTTTGCTGCCCGGGGA
CTCTGCTTGCGCCTTCCCCGCGGGTATCCTTTTCGCCGCCGTGCTCACCA
TACCCAGTTCATCACATCATCCGGATTCCTCTGCTCACCAACGACACCAA
TATAAATCATAGAAACAAGCATGACAGAGGCGGAGAAGCTGGTCGGGGAG
CGTATGTGGAACTATTTGGCGCCTTCTGGGGACAAGAAGGGCCCCTTCCC
CGAGTCCATTCTCATACGAATGCTGTTGCGGAGGCTGCCTGGACTAGATA
CCTCGTCGTATTGCTGGACACCTGGCATGGACGACTGGCGGCCGGTGGGG
CAAATGACAAATTTTAAGGCCGTCCTCGAGGCGGAGGGCGCGGCCTGGTA
TTATGTGGACAAGGACGGGGAGCAGCAAGGCCCATCGGAGGCCAAACATA
TGGCAGCACTGCTGCAAGGTGGCGAAATTGATGGCTTGAGCTTGGTCTGG
CACCAGAATTTGGCTGGAGGGTGGAAGCCTCTCTCGGAGGTAGAGGAGCT
CCGGCAAGTGGTGCGCCTGTTGATGCGGCCGGAAGAAGATGAAGATGGGG
AAGGCAGTGAACAAAAAAGAGAGGAGGAGGGAGAGGATAGTGGAGGGGGT
AGCGGTAGGGATGGTGCGTCCGTGGTGGACGAGCGACAGGTATTTTACGG
AGACGAGATGCCCACCCGCTCGCTTGCCGCAGCCTCGGCTGCTGCGAAGA
GGTCAAGGAGCGCTCTTAGCGTGAAGCAATCGTACGTGGCAGATGATGGC
ACAAAGTATCGGCTGAATCCTCTGACGAATGAGTGGGAGGAGGCTGGTTC
GGGAGAGGAGAGTGGGGAGGGTGGAGAGGAAGGTGAAGAGGAAGGCGAGG
GAGAGGAAAACGAGGAGGAGGGGAACGGCAGCATGGTGCGACAGACCTCG
GTGGGGGCACCTCCAAGCGGCGAGGGCGGGAATGTATCAAAGAGGAAGAA
GTCAAAGAAGAAGAAGAAGAATCGTGGTGGAGAGGGGTGGGACAAGGCGT
CCAACAAGTGGGTGTACGTGACGGGCCTGCCCTCGGACGCGACGGTTGAG
GAGCTAGAATCGCATTTCAAGCAGGTCGGCATCTTGGCGGTGGACCCCGA
GACACAGCAACCTCGTGTGAAGATCTATCGTGACCCCACGGGCGCACCGA
AGGGCGATGCTTCGGTGGCGTACGTCCGGCCCGAGTCAGTGGAACTGGCC
GTGGAGATTCTGAATGGGGGCTTGCTCCGACCAGGCTGGCCCATGACCAT
CACCAAGGCCGTATTTCAGCAAAAGTCAGTTGGTAATGATGGTGTGGAGG
GAGGTGGAGGAGGACCCGTAAAGCGGCGGAAGGTAAATGAAGCCAAAATC
AAAGTGGCGCGGGCGGCTGTCAAACAGGCACTTTCTTGGGCCGAGGCGGA
CGATACGGGATTAGGGGGCAAAGCACTGCGCATCGTGGTGGTAAAGAACA
TGTTTCATCCCACTCAGTGCCAGGCGCCGGGATTTGTGGAGGAGCTGCAG
GAGGATTTGGAAGGGGAATGCTCCTCGTTGGGACCGCTAGAGAAGATGAC
TGTATTTGAGAGGCACCCGGAGGGGGTGGTTGTCATCAAGTTTGGCACGG
CCTTCGCGGCGGAGCAGTGTGTCAAGCTGATGAACGGTCGCTTTTTTGCC
GGACGTAAGCTGCAGTCGTCCTACTGGGACGGTAGCACTGACTACACCAA
GGCAGTTTTCCGAGCCGAGAGGCCGCATGCGACCACGGGTGCCGAGGAAG
AAGGGGGTGGTCAAGGAGAGGAGGAGGGTAGTGGCGAGGCGGGGAGTACC
TTTGTATTCACTACAGAGGACGAGGAGGCGGCGGAGGAGGATAGGCGGCT
GGCGGAGTTTGGGGACGAGCTCGACAACCAGGAGCTGCCACCAGAGTTTC
AACTGGAGGTGGCGCCTGAGTAAGCAGGGAGCCATGTAAAGGGAAAAGAA
GCATGCTAATAGTAATT back to topprotein sequence of NO19G01870.1 >NO19G01870.1-protein ID=NO19G01870.1-protein|Name=NO19G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MTEAEKLVGERMWNYLAPSGDKKGPFPESILIRMLLRRLPGLDTSSYCWT
PGMDDWRPVGQMTNFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQG
GEIDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPEEDEDGEGSEQKR
EEEGEDSGGGSGRDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALS
VKQSYVADDGTKYRLNPLTNEWEEAGSGEESGEGGEEGEEEGEGEENEEE
GNGSMVRQTSVGAPPSGEGGNVSKRKKSKKKKKNRGGEGWDKASNKWVYV
TGLPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPTGAPKGDASVA
YVRPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPV
KRRKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQC
QAPGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQC
VKLMNGRFFAGRKLQSSYWDGSTDYTKAVFRAERPHATTGAEEEGGGQGE
EEGSGEAGSTFVFTTEDEEAAEEDRRLAEFGDELDNQELPPEFQLEVAPE
* back to topmRNA from alignment at chr19:553735..556459- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01870.1 ID=NO19G01870.1|Name=NO19G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2725bp|location=Sequence derived from alignment at chr19:553735..556459- (Nannochloropsis oceanica)
CCCGGTAGTATAGTGGTCAGAATCCCTCCCTGTCACGGAGGAGGCCGGGG
TTAAGACACTTTCCGCCTCTTCACAAGAGTCCGAGGTGGATGTCTCCCGT
TCGATTCCCCGCCGAGGAGATGAACAGCTTTGTTTTTGACTTCCGGTAGA
GTTACATTTCTCGTCTCTCTCCATTTTTTTCTCGTTCCTGCATCTTTTCA
TTCATCTGAGTACGTAGCGCGCTAGATCACTCCTGGCTTTACCTATGTAT
TTCCCAATCCAGTTCTTCATGGAGCGACAGCAACACATTCAAACAAGTTG
TGAAATAATGGCCCATACACCTGCAGATTGAGGCGAATTATGGAGTTATA
CACTTCTCATAAAAAAGCATTCTCGCACCTCTCACCTTCCCCTCTCACCT
ATCCACACACGTCCATTCTTTTAGGGTTTTGATGCTTTGCTGCCCGGGGA
CTCTGCTTGCGCCTTCCCCGCGGGTATCCTTTTCGCCGCCGTGCTCACCA
TACCCAGTTCATCACATCATCCGGATTCCTCTGCTCACCAACGACACCAA
TATAAATCATAGAAACAAGCATGACAGAGGCGGAGAAGCTGGTCGGGGAG
CGTATGTGGAACTATTTGGCGCCTTCTGGGGACAAGAAGGTGCGTTGTTT
TGAGCACTTCCTTTGTCCGTCTTGGTGGGGGGACGGTAATGGTGTAGGCA
AGGCCTCTACAGGCAGCGACAACCTCAGAAGCCAAAAATGGACTTGGGCA
AAAGCTTAATGCCAGGCGTATAGTGGCTGTGGTGGCGCTTGCTGCCTTTC
CACAATGTTCCTGTAGCCCATATCACTGGCCCTCATCATCCTGCTCACTG
CTCGTCCCTCGCTCTGTCTTCCAACCCTTCTCCACTCACGACCACTCACG
ACCCTTCTCCACTCACGACTCCCATGCAAATCATCCATTTAATAAAGGGC
CCCTTCCCCGAGTCCATTCTCATACGAATGCTGTTGCGGAGGCTGCCTGG
ACTAGATACCTCGTCGTATTGCTGGACACCTGGCATGGACGACTGGCGGC
CGGTGGGGCAAATGACAAATTTTAAGGCCGTCCTCGAGGCGGAGGGCGCG
GCCTGGTATTATGTGGACAAGGACGGGGAGCAGCAAGGCCCATCGGAGGC
CAAACATATGGCAGCACTGCTGCAAGGTGGCGAAATTGATGGCTTGAGCT
TGGTCTGGCACCAGAATTTGGCTGGAGGGTGGAAGCCTCTCTCGGAGGTA
GAGGAGCTCCGGCAAGTGGTGCGCCTGTTGATGCGGCCGGAAGAAGATGA
AGATGGGGAAGGCAGTGAACAAAAAAGAGAGGAGGAGGGAGAGGATAGTG
GAGGGGGTAGCGGTAGGGATGGTGCGTCCGTGGTGGACGAGCGACAGGTA
TTTTACGGAGACGAGATGCCCACCCGCTCGCTTGCCGCAGCCTCGGCTGC
TGCGAAGAGGTCAAGGAGCGCTCTTAGCGTGAAGCAATCGTACGTGGCAG
ATGATGGCACAAAGTATCGGCTGAATCCTCTGACGAATGAGTGGGAGGAG
GCTGGTTCGGGAGAGGAGAGTGGGGAGGGTGGAGAGGAAGGTGAAGAGGA
AGGCGAGGGAGAGGAAAACGAGGAGGAGGGGAACGGCAGCATGGTGCGAC
AGACCTCGGTGGGGGCACCTCCAAGCGGCGAGGGCGGGAATGTATCAAAG
AGGAAGAAGTCAAAGAAGAAGAAGAAGAATCGTGGTGGAGAGGGGTGGGA
CAAGGCGTCCAACAAGTGGGTGTACGTGACGGGCCTGCCCTCGGACGCGA
CGGTTGAGGAGCTAGAATCGCATTTCAAGCAGGTCGGCATCTTGGCGGTG
GACCCCGAGACACAGCAACCTCGTGTGAAGATCTATCGTGACCCCACGGG
CGCACCGAAGGGCGATGCTTCGGTGGCGTACGTCCGGCCCGAGTCAGTGG
AACTGGCCGTGGAGATTCTGAATGGGGGCTTGCTCCGACCAGGCTGGCCC
ATGACCATCACCAAGGCCGTATTTCAGCAAAAGTCAGTTGGTAATGATGG
TGTGGAGGGAGGTGGAGGAGGACCCGTAAAGCGGCGGAAGGTAAATGAAG
CCAAAATCAAAGTGGCGCGGGCGGCTGTCAAACAGGCACTTTCTTGGGCC
GAGGCGGACGATACGGGATTAGGGGGCAAAGCACTGCGCATCGTGGTGGT
AAAGAACATGTTTCATCCCACTCAGTGCCAGGCGCCGGGATTTGTGGAGG
AGCTGCAGGAGGATTTGGAAGGGGAATGCTCCTCGTTGGGACCGCTAGAG
AAGATGACTGTATTTGAGAGGCACCCGGAGGGGGTGGTTGTCATCAAGTT
TGGCACGGCCTTCGCGGCGGAGCAGTGTGTCAAGCTGATGAACGGTCGCT
TTTTTGCCGGACGTAAGCTGCAGTCGTCCTACTGGGACGGTAGCACTGAC
TACACCAAGGCAGTTTTCCGAGCCGAGAGGCCGCATGCGACCACGGGTGC
CGAGGAAGAAGGGGGTGGTCAAGGAGAGGAGGAGGGTAGTGGCGAGGCGG
GGAGTACCTTTGTATTCACTACAGAGGACGAGGAGGCGGCGGAGGAGGAT
AGGCGGCTGGCGGAGTTTGGGGACGAGCTCGACAACCAGGAGCTGCCACC
AGAGTTTCAACTGGAGGTGGCGCCTGAGTAAGCAGGGAGCCATGTAAAGG
GAAAAGAAGCATGCTAATAGTAATT back to topCoding sequence (CDS) from alignment at chr19:553735..556459- >NO19G01870.1 ID=NO19G01870.1|Name=NO19G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1803bp|location=Sequence derived from alignment at chr19:553735..556459- (Nannochloropsis oceanica)
ATGACAGAGGCGGAGAAGCTGGTCGGGGAGCGTATGTGGAACTATTTGGC
GCCTTCTGGGGACAAGAAGGGCCCCTTCCCCGAGTCCATTCTCATACGAA
TGCTGTTGCGGAGGCTGCCTGGACTAGATACCTCGTCGTATTGCTGGACA
CCTGGCATGGACGACTGGCGGCCGGTGGGGCAAATGACAAATTTTAAGGC
CGTCCTCGAGGCGGAGGGCGCGGCCTGGTATTATGTGGACAAGGACGGGG
AGCAGCAAGGCCCATCGGAGGCCAAACATATGGCAGCACTGCTGCAAGGT
GGCGAAATTGATGGCTTGAGCTTGGTCTGGCACCAGAATTTGGCTGGAGG
GTGGAAGCCTCTCTCGGAGGTAGAGGAGCTCCGGCAAGTGGTGCGCCTGT
TGATGCGGCCGGAAGAAGATGAAGATGGGGAAGGCAGTGAACAAAAAAGA
GAGGAGGAGGGAGAGGATAGTGGAGGGGGTAGCGGTAGGGATGGTGCGTC
CGTGGTGGACGAGCGACAGGTATTTTACGGAGACGAGATGCCCACCCGCT
CGCTTGCCGCAGCCTCGGCTGCTGCGAAGAGGTCAAGGAGCGCTCTTAGC
GTGAAGCAATCGTACGTGGCAGATGATGGCACAAAGTATCGGCTGAATCC
TCTGACGAATGAGTGGGAGGAGGCTGGTTCGGGAGAGGAGAGTGGGGAGG
GTGGAGAGGAAGGTGAAGAGGAAGGCGAGGGAGAGGAAAACGAGGAGGAG
GGGAACGGCAGCATGGTGCGACAGACCTCGGTGGGGGCACCTCCAAGCGG
CGAGGGCGGGAATGTATCAAAGAGGAAGAAGTCAAAGAAGAAGAAGAAGA
ATCGTGGTGGAGAGGGGTGGGACAAGGCGTCCAACAAGTGGGTGTACGTG
ACGGGCCTGCCCTCGGACGCGACGGTTGAGGAGCTAGAATCGCATTTCAA
GCAGGTCGGCATCTTGGCGGTGGACCCCGAGACACAGCAACCTCGTGTGA
AGATCTATCGTGACCCCACGGGCGCACCGAAGGGCGATGCTTCGGTGGCG
TACGTCCGGCCCGAGTCAGTGGAACTGGCCGTGGAGATTCTGAATGGGGG
CTTGCTCCGACCAGGCTGGCCCATGACCATCACCAAGGCCGTATTTCAGC
AAAAGTCAGTTGGTAATGATGGTGTGGAGGGAGGTGGAGGAGGACCCGTA
AAGCGGCGGAAGGTAAATGAAGCCAAAATCAAAGTGGCGCGGGCGGCTGT
CAAACAGGCACTTTCTTGGGCCGAGGCGGACGATACGGGATTAGGGGGCA
AAGCACTGCGCATCGTGGTGGTAAAGAACATGTTTCATCCCACTCAGTGC
CAGGCGCCGGGATTTGTGGAGGAGCTGCAGGAGGATTTGGAAGGGGAATG
CTCCTCGTTGGGACCGCTAGAGAAGATGACTGTATTTGAGAGGCACCCGG
AGGGGGTGGTTGTCATCAAGTTTGGCACGGCCTTCGCGGCGGAGCAGTGT
GTCAAGCTGATGAACGGTCGCTTTTTTGCCGGACGTAAGCTGCAGTCGTC
CTACTGGGACGGTAGCACTGACTACACCAAGGCAGTTTTCCGAGCCGAGA
GGCCGCATGCGACCACGGGTGCCGAGGAAGAAGGGGGTGGTCAAGGAGAG
GAGGAGGGTAGTGGCGAGGCGGGGAGTACCTTTGTATTCACTACAGAGGA
CGAGGAGGCGGCGGAGGAGGATAGGCGGCTGGCGGAGTTTGGGGACGAGC
TCGACAACCAGGAGCTGCCACCAGAGTTTCAACTGGAGGTGGCGCCTGAG
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