NO19G01830, NO19G01830 (gene) Nannochloropsis oceanica

Overview
NameNO19G01830
Unique NameNO19G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2157
Alignment locationchr19:543577..545733 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:543577..545733 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR003107HAT
Homology
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BLAST of NO19G01830 vs. NCBI_GenBank
Match: EWM23685.1 (hypothetical protein Naga_100030g28 [Nannochloropsis gaditana])

HSP 1 Score: 469.5 bits (1207), Expect = 1.800e-128
Identity = 274/529 (51.80%), Postives = 336/529 (63.52%), Query Frame = 0 
Query:    1 MSTSAAFDLPGVEAQVEGVLASTGVEDARKLWEETLSAWADEYSRLLDEASPPLSAESRRPYEEGLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEALKAKGGGGTEGIETVAHLKAMLNVPEEXXXXXXXXXXXXXXXXXXXXXXXXXAESSTMMEVDELQ----PATPTAEEEAETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSHQSQIDTMNEVSTET------KAGIAAAAIMPETARIATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALLNMEDAYGTGLSDSTLESVKALLADPTILDIIEGQWLIQAMKQQLASTIVTHLDDKHAEAAQRLALRHAQAQQQLSSLPSIPPSFHKQLEQERHALALACERERRQVGAQLSIELWQLLEAQQAVLGEGEGGAGLPEVKVTRDRAAVATQQQVLRVVTANMQLYHFHQRRQALTEEVEKHAELTRQLQ 520
            +S    +D+  V+AQV+ +LAS GVEDARK +EETLS+WADEYSR+L+EAS PLS   R+PYEE LVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEK  +LWVEYGRFCRERGKFANAQKVYLRAVEVL +K+ERD+IW+EFLEALKAKGG GT+GIETVA LKAML +PEE                          +   +  VDE+     P  P+++  ++                               S  S +++  +   ET         + A +  PE    + A                                     EALLNM+DAYG GL + TL +VK LL DP +LD++EGQWL+QAMKQQLASTI+  L+ KH EA +RLALRHAQ Q   +S+PS+  S   QLEQER ALA ACERER Q+  QLS E WQ+LEAQQ++LGEG GGAGLP +++TRDR A+A QQ+VLRVVTANMQLYHFH++RQ +TE++    +L  +LQ
Sbjct:    3 ISAVVDYDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLEALKAKGGPGTDGIETVAQLKAMLGIPEE------------------------EEQKHEIKGVDEVSAESGPGDPSSDASSDPVSGSIIRGMEKPASGNNLPDNAVNDAPVF-SEPSVLESSPDGKRETLTLGSQMQMVPAQSTAPELVDASAA------------------KIAPAQPAETEPPPLLFSTEALLNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTILAGLEAKHTEARERLALRHAQLQ---ASIPSV--SLSSQLEQERQALATACERERAQLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLRVVTANMQLYHFHRKRQRMTEDLAHQTDLLHELQ 483
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BLAST of NO19G01830 vs. NCBI_GenBank
Match: XP_008616089.1 (hypothetical protein SDRG_11812 [Saprolegnia diclina VS20] >EQC30496.1 hypothetical protein SDRG_11812 [Saprolegnia diclina VS20])

HSP 1 Score: 72.8 bits (177), Expect = 4.900e-9
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:   67 VDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEALKAKGG 156
            + LWLA+A  E  LRQ+KQA KVFE A T   G  +  LW  Y  FC ER KF+NA+K+ LRA++ +  ++E+  +W   LEA  A  G
Sbjct:   49 IGLWLAFAELEMELRQFKQATKVFELAVTKWPG--SFDLWKRYIGFCLEREKFSNAKKLVLRALDTIHGETEQAALW-NLLEACPATQG 134
[Close]
BLAST of NO19G01830 vs. NCBI_GenBank
Match: XP_012208304.1 (hypothetical protein SPRG_13886 [Saprolegnia parasitica CBS 223.65] >KDO20992.1 hypothetical protein SPRG_13886 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.8 bits (177), Expect = 4.900e-9
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:   67 VDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEALKAKGG 156
            + LWLA+A  E  LRQ+KQA KVFE A T   G  +  LW  Y  FC ER KF+NA+K+ LRA++ +  ++E+  +W   LEA  A  G
Sbjct:   63 IGLWLAFAELEMELRQFKQATKVFELAVTKWPG--SFDLWKRYIGFCLEREKFSNAKKLVLRALDTIHGEAEQAALWG-LLEACTATQG 148
[Close]
BLAST of NO19G01830 vs. NCBI_GenBank
Match: OQR89818.1 (hypothetical protein THRCLA_09565, partial [Thraustotheca clavata])

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-7
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0 
Query:   67 VDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWA 145
            + LWLA+A  E  LRQ+KQA KVFE A        + +LW  Y  FC +R KF+NA+K+ +RA++ LV+ SE + +W+
Sbjct:   48 IGLWLAFAELEMELRQFKQATKVFEMAIAK--WPASIELWKRYVSFCLDREKFSNAKKLVMRALD-LVASSEHESLWS 122
[Close]
BLAST of NO19G01830 vs. NCBI_GenBank
Match: OQR81783.1 (hypothetical protein ACHHYP_16423, partial [Achlya hypogyna])

HSP 1 Score: 66.6 bits (161), Expect = 3.500e-7
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0 
Query:   67 VDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEALKAKGG 156
            + LWLA+A  E  LRQ+KQA KVFE A        + +LW  Y  FC +R KF+NA+K+ LRA++     +E + +W + L A  A  G
Sbjct:   49 IALWLAFAELEMELRQFKQATKVFELAVAK--WPSSIELWKRYISFCLDREKFSNAKKLVLRALDTTNKPTEHEALW-DLLRACPATLG 134
The following BLAST results are available for this feature:
BLAST of NO19G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM23685.11.800e-12851.80hypothetical protein Naga_100030g28 [Nannochlorops... [more]
XP_008616089.14.900e-946.07hypothetical protein SDRG_11812 [Saprolegnia dicli... [more]
XP_012208304.14.900e-946.07hypothetical protein SPRG_13886 [Saprolegnia paras... [more]
OQR89818.11.600e-744.87hypothetical protein THRCLA_09565, partial [Thraus... [more]
OQR81783.13.500e-741.57hypothetical protein ACHHYP_16423, partial [Achlya... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004523NSK004523Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01830.1NO19G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100030g28gene6773Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01830.1NO19G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01830 ID=NO19G01830|Name=NO19G01830|organism=Nannochloropsis oceanica|type=gene|length=2157bp
ATGAGCACCTCTGCCGCCTTTGACCTGCCCGGTGTCGAGGCACAGGTGGA
GGGTGTGCTGGCCTCAACCGGTGTGGAGGATGCCCGCAAGCTGTGGGAGG
AGACATTGTCGGCGTGGGCGGACGAGTACTCCCGTCTATTGGATGAAGCC
AGCCCCCCCTTGTCCGCCGAGAGTCGTCGCCCCTACGAAGAGGGGCTGGT
GGACCTGTGGCTTGCTTATGCGGCGTTTGAGCGGCGCTTGCGGCAGTGGA
AGCAGGCAGTCAAGGTATTCGAAAGCGCCACTACTGATGTGATTGGAGAG
AAGGCCCCCAAGTTGTGGGTGGAGTACGGACGCTTTTGTCGGGAACGAGG
CAAGTTCGCCAACGCGCAAAAAGTGTACTTGAGGGCGGTGGAGGTACTGG
TGAGCAAGTCTGAGCGGGATGTGATTTGGGCCGAGTTCTTGGAGGCGCTC
AAGGCGAAAGGAGGGGGGGGGACGGAGGGGATTGAGACGGTGGCGCATCT
CAAGGCTATGCTTAATGTGCCTGAGGAAGAGGAGGAGGAAGGAAAGGAAG
AAGTGCACAAGCAAAAGGAGGGACAGCAGGACGGTAAGGTTGACGAGGCG
GCAGCAGAGTCATCCACAATGATGGAGGTAGATGAATTACAGCCGGCAAC
ACCAACGGCAGAGGAAGAAGCAGAGACAGCAGTAGCTCCAGTAGACGATG
CCGTCGCGCGCGTCCTAGCTGCTGTGGCGGGGGCTGAGGCTGCTGACTTT
CACCTTCCTGCACCAGACAGTCATCAGTCACAGATCGACACGATGAACGA
GGTTTCAACAGAAACAAAAGCAGGAATCGCAGCAGCAGCGATAATGCCAG
AAACAGCAAGGATAGCAACAGCATCATCAACAGCAGGACCAACAGCAGCA
ACCGCCACACTCCTTCCTCCGCCCTCCCAGCTACCACCACCCCAATCAAC
AGACCTTGAGCCACCCCCTTTGCTCTTCACCACTGAAGCCCTTCTCAATA
TGGAAGACGCCTATGGGACAGGCCTCAGCGACTCCACCCTCGAGTCAGTT
AAGGCCCTGCTGGCCGACCCCACCATCCTGGACATCATAGAAGGCCAATG
GCTCATCCAAGCCATGAAGCAGCAACTCGCCTCCACTATCGTGACCCATT
TGGACGACAAACACGCCGAAGCCGCTCAACGCCTCGCCCTCCGCCACGCG
CAAGCCCAACAACAGCTTTCCTCCCTCCCCTCGATCCCTCCCTCTTTCCA
CAAGCAGCTCGAGCAAGAGCGACACGCACTAGCCCTCGCCTGCGAAAGAG
AGCGACGCCAAGTAGGTGCACAACTTTCAATCGAACTATGGCAGCTCCTT
GAAGCCCAACAGGCCGTGTTGGGGGAAGGAGAAGGAGGGGCTGGGCTACC
CGAGGTGAAGGTAACGAGGGATCGAGCAGCAGTAGCCACGCAGCAGCAGG
TCCTGAGGGTCGTCACAGCCAACATGCAGCTCTATCACTTCCATCAAAGG
AGGCAAGCACTAACGGAAGAAGTAGAAAAGCACGCTGAGCTTACCCGACA
GCTACAGGGTCCTCCTGCTCCTCCTCCTGCTGCTGCCGGTGGTGGTGGTG
ACTCGGCCTCCCCCTTGGTCCTACCCCCACCCACCAAGGTGGAAGTACTC
CCCTCTCCCTTCTTCCTCCAGTCCTCCTCCTCCCCCTCCTCCTCCTCTCC
TCTCCCGAGTAACCTACGTGGAGGAGGGAATGACAGCAGTAAGCGGGAGC
GGGTTTCGAGGTGGGAAACCGCCGTCCCTTTGACAGCTGAAGACAAAGTC
AAGGGAGGTATTAAAGGAAAAAGAAATCATAGAGGAGGGGAAGAAAGTTG
TGGGGAAGGAGGAGGAAGAGGGGGAGGAGGAGGAGGGAGAGGAAGCAGAC
AAAGCAGGGCAAAAATAGAAGGGAGGGGCAACACACGCGAGCGCGGCGCT
GCTGCAGCTGCTGCAGCTGCTGCTGCTACTTCTGCTGCGAGTCCTCGGGT
ACGGTCGCCACCGCGGAGGAGCAGTCGAAGGAATGGGGGTAGGGAGAAGG
GGGGAGAAAGAGGCAAGGGAGGTGGGAGGGAGAGTGAAGAGCCTAACTTA
CCGCCTAATGAAGACAATAGGACGATTCTTCGGAAGATGATGCGGCACTT
CAAATAA
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protein sequence of NO19G01830.1

>NO19G01830.1-protein ID=NO19G01830.1-protein|Name=NO19G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MSTSAAFDLPGVEAQVEGVLASTGVEDARKLWEETLSAWADEYSRLLDEA
SPPLSAESRRPYEEGLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGE
KAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEAL
KAKGGGGTEGIETVAHLKAMLNVPEEEEEEGKEEVHKQKEGQQDGKVDEA
AAESSTMMEVDELQPATPTAEEEAETAVAPVDDAVARVLAAVAGAEAADF
HLPAPDSHQSQIDTMNEVSTETKAGIAAAAIMPETARIATASSTAGPTAA
TATLLPPPSQLPPPQSTDLEPPPLLFTTEALLNMEDAYGTGLSDSTLESV
KALLADPTILDIIEGQWLIQAMKQQLASTIVTHLDDKHAEAAQRLALRHA
QAQQQLSSLPSIPPSFHKQLEQERHALALACERERRQVGAQLSIELWQLL
EAQQAVLGEGEGGAGLPEVKVTRDRAAVATQQQVLRVVTANMQLYHFHQR
RQALTEEVEKHAELTRQLQGPPAPPPAAAGGGGDSASPLVLPPPTKVEVL
PSPFFLQSSSSPSSSSPLPSNLRGGGNDSSKRERVSRWETAVPLTAEDKV
KGGIKGKRNHRGGEESCGEGGGRGGGGGGRGSRQSRAKIEGRGNTRERGA
AAAAAAAAATSAASPRVRSPPRRSSRRNGGREKGGERGKGGGRESEEPNL
PPNEDNRTILRKMMRHFK*
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Synonyms
Publications