NO19G01830.1, NO19G01830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01830.1
Unique Name	NO19G01830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2157
Alignment location	chr19:543577..545733 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:543577..545733 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G01830.1 vs.
Match: EWM23685.1 (hypothetical protein Naga_100030g28 [Nannochloropsis gaditana])

HSP 1 Score: 528.9 bits (1361), Expect = 2.500e-146
Identity = 362/722 (50.14%), Postives = 453/722 (62.74%), Query Frame = 0

Query:    1 MSTSAAFDLPGVEAQVEGVLASTGVEDARKLWEETLSAWADEYSRLLDEASPPLSAESRRPYEEGLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEALKAKGGGGTEGIETVAHLKAMLNVPEEEEEEGKEEVHKQKEGQQDGKVDEAAAESSTMMEVDELQPATPTAEEEAETAVAPVDDAVARVLAAVAGAEAADFHLPAPDSHQSQIDTMNEVSTETKAGIAAAAIMPETARIATASSTAGPTAATATLLPPPSQLPPPQSTDLEPPPLLFTTEALLNMEDAYGTGLSDSTLESVKALLADPTILDIIEGQWLIQAMKQQLASTIVTHLDDKHAEAAQRLALRHAQAQQQLSSLPSIPPSFHKQLEQERHALALACERERRQVGAQLSIELWQLLEAQQAVLGEGEGGAGLPEVKVTRDRAAVATQQQVLRVVTANMQLYHFHQRRQALTEEVEKHAELTRQLQGPPAPPPAAAGGGGDSASPLVLPPPTKVEVLPSPFFLQSSSSPSSSSP--LPSNLRGGGNDSSKRERVS--RWETAVPLTAEDKVKGGIKGKRNHRGGEESCGEGGGRGGGGGGRGSRQSRAKIEGRGNTRERGAAAAAAAAAATSAASPRVRSPPRRSSRRNGGREKGGERGKGGGRESEEPNLPPNEDNRTILRKMMRHFK 719
            +S    +D+  V+AQV+ +LAS GVEDARK +EETLS+WADEYSR+L+EAS PLS   R+PYEE LVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEK  +LWVEYGRFCRERGKFANAQKVYLRAVEVL +K+ERD+IW+EFLEALKAKGG GT+GIETVA LKAML +PEEEE++     H+ K       VDE +AES          P  P+++  ++    PV  ++ R +   A       +LP    + + + +   V   +  G      +    ++  A STA P    A+     +++ P Q  + EPPPLLF+TEALLNM+DAYG GL + TL +VK LL DP +LD++EGQWL+QAMKQQLASTI+  L+ KH EA +RLALRHAQ Q   +S+PS+  S   QLEQER ALA ACERER Q+  QLS E WQ+LEAQQ++LGEG GGAGLP +++TRDR A+A QQ+VLRVVTANMQLYHFH++RQ +TE++    +L  +LQ       AA+G   +S         T     PS     SSS+P + SP  LPS  R  G+  SKR   S  RWE    +                   E++  EG G G   GGR  +Q RA+        +RG +    +A          RSPPRRSSRR G     G   + G    E+    P+ DNR ILR+MM HFK
Sbjct:    3 ISAVVDYDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLEALKAKGGPGTDGIETVAQLKAMLGIPEEEEQK-----HEIKG------VDEVSAESG---------PGDPSSDASSD----PVSGSIIRGMEKPASGN----NLPDNAVNDAPVFSEPSVLESSPDGKRETLTLGSQMQMVPAQSTA-PELVDASA----AKIAPAQPAETEPPPLLFSTEALLNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTILAGLEAKHTEARERLALRHAQLQ---ASIPSV--SLSSQLEQERQALATACERERAQLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLRVVTANMQLYHFHRKRQRMTEDLAHQTDLLHELQ------CAASGVESESGKSTATRAETS---KPS-----SSSAPDAPSPDSLPSGERSNGSSRSKRGTSSGTRWEPVASV-------------------EKTVEEGKG-GQSEGGRPRKQMRAR-------GDRGHSPHVESANVG-------RSPPRRSSRRGG----HGSAYRDGAESKEKATSAPSADNRAILRRMMEHFK 634

The following BLAST results are available for this feature:

BLAST of NO19G01830.1 vs.

BLAST of NO19G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23685.1	2.500e-146	50.14	hypothetical protein Naga_100030g28 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G01830	NO19G01830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01830.1	NO19G01830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01830.1.cds1	NO19G01830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:543577..545733+
coding sequence from alignment at chr19:543577..545733+

mRNA sequence

>NO19G01830.1 ID=NO19G01830.1|Name=NO19G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp
ATGAGCACCTCTGCCGCCTTTGACCTGCCCGGTGTCGAGGCACAGGTGGA
GGGTGTGCTGGCCTCAACCGGTGTGGAGGATGCCCGCAAGCTGTGGGAGG
AGACATTGTCGGCGTGGGCGGACGAGTACTCCCGTCTATTGGATGAAGCC
AGCCCCCCCTTGTCCGCCGAGAGTCGTCGCCCCTACGAAGAGGGGCTGGT
GGACCTGTGGCTTGCTTATGCGGCGTTTGAGCGGCGCTTGCGGCAGTGGA
AGCAGGCAGTCAAGGTATTCGAAAGCGCCACTACTGATGTGATTGGAGAG
AAGGCCCCCAAGTTGTGGGTGGAGTACGGACGCTTTTGTCGGGAACGAGG
CAAGTTCGCCAACGCGCAAAAAGTGTACTTGAGGGCGGTGGAGGTACTGG
TGAGCAAGTCTGAGCGGGATGTGATTTGGGCCGAGTTCTTGGAGGCGCTC
AAGGCGAAAGGAGGGGGGGGGACGGAGGGGATTGAGACGGTGGCGCATCT
CAAGGCTATGCTTAATGTGCCTGAGGAAGAGGAGGAGGAAGGAAAGGAAG
AAGTGCACAAGCAAAAGGAGGGACAGCAGGACGGTAAGGTTGACGAGGCG
GCAGCAGAGTCATCCACAATGATGGAGGTAGATGAATTACAGCCGGCAAC
ACCAACGGCAGAGGAAGAAGCAGAGACAGCAGTAGCTCCAGTAGACGATG
CCGTCGCGCGCGTCCTAGCTGCTGTGGCGGGGGCTGAGGCTGCTGACTTT
CACCTTCCTGCACCAGACAGTCATCAGTCACAGATCGACACGATGAACGA
GGTTTCAACAGAAACAAAAGCAGGAATCGCAGCAGCAGCGATAATGCCAG
AAACAGCAAGGATAGCAACAGCATCATCAACAGCAGGACCAACAGCAGCA
ACCGCCACACTCCTTCCTCCGCCCTCCCAGCTACCACCACCCCAATCAAC
AGACCTTGAGCCACCCCCTTTGCTCTTCACCACTGAAGCCCTTCTCAATA
TGGAAGACGCCTATGGGACAGGCCTCAGCGACTCCACCCTCGAGTCAGTT
AAGGCCCTGCTGGCCGACCCCACCATCCTGGACATCATAGAAGGCCAATG
GCTCATCCAAGCCATGAAGCAGCAACTCGCCTCCACTATCGTGACCCATT
TGGACGACAAACACGCCGAAGCCGCTCAACGCCTCGCCCTCCGCCACGCG
CAAGCCCAACAACAGCTTTCCTCCCTCCCCTCGATCCCTCCCTCTTTCCA
CAAGCAGCTCGAGCAAGAGCGACACGCACTAGCCCTCGCCTGCGAAAGAG
AGCGACGCCAAGTAGGTGCACAACTTTCAATCGAACTATGGCAGCTCCTT
GAAGCCCAACAGGCCGTGTTGGGGGAAGGAGAAGGAGGGGCTGGGCTACC
CGAGGTGAAGGTAACGAGGGATCGAGCAGCAGTAGCCACGCAGCAGCAGG
TCCTGAGGGTCGTCACAGCCAACATGCAGCTCTATCACTTCCATCAAAGG
AGGCAAGCACTAACGGAAGAAGTAGAAAAGCACGCTGAGCTTACCCGACA
GCTACAGGGTCCTCCTGCTCCTCCTCCTGCTGCTGCCGGTGGTGGTGGTG
ACTCGGCCTCCCCCTTGGTCCTACCCCCACCCACCAAGGTGGAAGTACTC
CCCTCTCCCTTCTTCCTCCAGTCCTCCTCCTCCCCCTCCTCCTCCTCTCC
TCTCCCGAGTAACCTACGTGGAGGAGGGAATGACAGCAGTAAGCGGGAGC
GGGTTTCGAGGTGGGAAACCGCCGTCCCTTTGACAGCTGAAGACAAAGTC
AAGGGAGGTATTAAAGGAAAAAGAAATCATAGAGGAGGGGAAGAAAGTTG
TGGGGAAGGAGGAGGAAGAGGGGGAGGAGGAGGAGGGAGAGGAAGCAGAC
AAAGCAGGGCAAAAATAGAAGGGAGGGGCAACACACGCGAGCGCGGCGCT
GCTGCAGCTGCTGCAGCTGCTGCTGCTACTTCTGCTGCGAGTCCTCGGGT
ACGGTCGCCACCGCGGAGGAGCAGTCGAAGGAATGGGGGTAGGGAGAAGG
GGGGAGAAAGAGGCAAGGGAGGTGGGAGGGAGAGTGAAGAGCCTAACTTA
CCGCCTAATGAAGACAATAGGACGATTCTTCGGAAGATGATGCGGCACTT
CAAATAA

protein sequence of NO19G01830.1

>NO19G01830.1-protein ID=NO19G01830.1-protein|Name=NO19G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MSTSAAFDLPGVEAQVEGVLASTGVEDARKLWEETLSAWADEYSRLLDEA
SPPLSAESRRPYEEGLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGE
KAPKLWVEYGRFCRERGKFANAQKVYLRAVEVLVSKSERDVIWAEFLEAL
KAKGGGGTEGIETVAHLKAMLNVPEEEEEEGKEEVHKQKEGQQDGKVDEA
AAESSTMMEVDELQPATPTAEEEAETAVAPVDDAVARVLAAVAGAEAADF
HLPAPDSHQSQIDTMNEVSTETKAGIAAAAIMPETARIATASSTAGPTAA
TATLLPPPSQLPPPQSTDLEPPPLLFTTEALLNMEDAYGTGLSDSTLESV
KALLADPTILDIIEGQWLIQAMKQQLASTIVTHLDDKHAEAAQRLALRHA
QAQQQLSSLPSIPPSFHKQLEQERHALALACERERRQVGAQLSIELWQLL
EAQQAVLGEGEGGAGLPEVKVTRDRAAVATQQQVLRVVTANMQLYHFHQR
RQALTEEVEKHAELTRQLQGPPAPPPAAAGGGGDSASPLVLPPPTKVEVL
PSPFFLQSSSSPSSSSPLPSNLRGGGNDSSKRERVSRWETAVPLTAEDKV
KGGIKGKRNHRGGEESCGEGGGRGGGGGGRGSRQSRAKIEGRGNTRERGA
AAAAAAAAATSAASPRVRSPPRRSSRRNGGREKGGERGKGGGRESEEPNL
PPNEDNRTILRKMMRHFK*

mRNA from alignment at chr19:543577..545733+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G01830.1 ID=NO19G01830.1|Name=NO19G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr19:543577..545733+ (Nannochloropsis oceanica)
ATGAGCACCTCTGCCGCCTTTGACCTGCCCGGTGTCGAGGCACAGGTGGA
GGGTGTGCTGGCCTCAACCGGTGTGGAGGATGCCCGCAAGCTGTGGGAGG
AGACATTGTCGGCGTGGGCGGACGAGTACTCCCGTCTATTGGATGAAGCC
AGCCCCCCCTTGTCCGCCGAGAGTCGTCGCCCCTACGAAGAGGGGCTGGT
GGACCTGTGGCTTGCTTATGCGGCGTTTGAGCGGCGCTTGCGGCAGTGGA
AGCAGGCAGTCAAGGTATTCGAAAGCGCCACTACTGATGTGATTGGAGAG
AAGGCCCCCAAGTTGTGGGTGGAGTACGGACGCTTTTGTCGGGAACGAGG
CAAGTTCGCCAACGCGCAAAAAGTGTACTTGAGGGCGGTGGAGGTACTGG
TGAGCAAGTCTGAGCGGGATGTGATTTGGGCCGAGTTCTTGGAGGCGCTC
AAGGCGAAAGGAGGGGGGGGGACGGAGGGGATTGAGACGGTGGCGCATCT
CAAGGCTATGCTTAATGTGCCTGAGGAAGAGGAGGAGGAAGGAAAGGAAG
AAGTGCACAAGCAAAAGGAGGGACAGCAGGACGGTAAGGTTGACGAGGCG
GCAGCAGAGTCATCCACAATGATGGAGGTAGATGAATTACAGCCGGCAAC
ACCAACGGCAGAGGAAGAAGCAGAGACAGCAGTAGCTCCAGTAGACGATG
CCGTCGCGCGCGTCCTAGCTGCTGTGGCGGGGGCTGAGGCTGCTGACTTT
CACCTTCCTGCACCAGACAGTCATCAGTCACAGATCGACACGATGAACGA
GGTTTCAACAGAAACAAAAGCAGGAATCGCAGCAGCAGCGATAATGCCAG
AAACAGCAAGGATAGCAACAGCATCATCAACAGCAGGACCAACAGCAGCA
ACCGCCACACTCCTTCCTCCGCCCTCCCAGCTACCACCACCCCAATCAAC
AGACCTTGAGCCACCCCCTTTGCTCTTCACCACTGAAGCCCTTCTCAATA
TGGAAGACGCCTATGGGACAGGCCTCAGCGACTCCACCCTCGAGTCAGTT
AAGGCCCTGCTGGCCGACCCCACCATCCTGGACATCATAGAAGGCCAATG
GCTCATCCAAGCCATGAAGCAGCAACTCGCCTCCACTATCGTGACCCATT
TGGACGACAAACACGCCGAAGCCGCTCAACGCCTCGCCCTCCGCCACGCG
CAAGCCCAACAACAGCTTTCCTCCCTCCCCTCGATCCCTCCCTCTTTCCA
CAAGCAGCTCGAGCAAGAGCGACACGCACTAGCCCTCGCCTGCGAAAGAG
AGCGACGCCAAGTAGGTGCACAACTTTCAATCGAACTATGGCAGCTCCTT
GAAGCCCAACAGGCCGTGTTGGGGGAAGGAGAAGGAGGGGCTGGGCTACC
CGAGGTGAAGGTAACGAGGGATCGAGCAGCAGTAGCCACGCAGCAGCAGG
TCCTGAGGGTCGTCACAGCCAACATGCAGCTCTATCACTTCCATCAAAGG
AGGCAAGCACTAACGGAAGAAGTAGAAAAGCACGCTGAGCTTACCCGACA
GCTACAGGGTCCTCCTGCTCCTCCTCCTGCTGCTGCCGGTGGTGGTGGTG
ACTCGGCCTCCCCCTTGGTCCTACCCCCACCCACCAAGGTGGAAGTACTC
CCCTCTCCCTTCTTCCTCCAGTCCTCCTCCTCCCCCTCCTCCTCCTCTCC
TCTCCCGAGTAACCTACGTGGAGGAGGGAATGACAGCAGTAAGCGGGAGC
GGGTTTCGAGGTGGGAAACCGCCGTCCCTTTGACAGCTGAAGACAAAGTC
AAGGGAGGTATTAAAGGAAAAAGAAATCATAGAGGAGGGGAAGAAAGTTG
TGGGGAAGGAGGAGGAAGAGGGGGAGGAGGAGGAGGGAGAGGAAGCAGAC
AAAGCAGGGCAAAAATAGAAGGGAGGGGCAACACACGCGAGCGCGGCGCT
GCTGCAGCTGCTGCAGCTGCTGCTGCTACTTCTGCTGCGAGTCCTCGGGT
ACGGTCGCCACCGCGGAGGAGCAGTCGAAGGAATGGGGGTAGGGAGAAGG
GGGGAGAAAGAGGCAAGGGAGGTGGGAGGGAGAGTGAAGAGCCTAACTTA
CCGCCTAATGAAGACAATAGGACGATTCTTCGGAAGATGATGCGGCACTT
CAAATAA

Coding sequence (CDS) from alignment at chr19:543577..545733+

>NO19G01830.1 ID=NO19G01830.1|Name=NO19G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at chr19:543577..545733+ (Nannochloropsis oceanica)
ATGAGCACCTCTGCCGCCTTTGACCTGCCCGGTGTCGAGGCACAGGTGGA
GGGTGTGCTGGCCTCAACCGGTGTGGAGGATGCCCGCAAGCTGTGGGAGG
AGACATTGTCGGCGTGGGCGGACGAGTACTCCCGTCTATTGGATGAAGCC
AGCCCCCCCTTGTCCGCCGAGAGTCGTCGCCCCTACGAAGAGGGGCTGGT
GGACCTGTGGCTTGCTTATGCGGCGTTTGAGCGGCGCTTGCGGCAGTGGA
AGCAGGCAGTCAAGGTATTCGAAAGCGCCACTACTGATGTGATTGGAGAG
AAGGCCCCCAAGTTGTGGGTGGAGTACGGACGCTTTTGTCGGGAACGAGG
CAAGTTCGCCAACGCGCAAAAAGTGTACTTGAGGGCGGTGGAGGTACTGG
TGAGCAAGTCTGAGCGGGATGTGATTTGGGCCGAGTTCTTGGAGGCGCTC
AAGGCGAAAGGAGGGGGGGGGACGGAGGGGATTGAGACGGTGGCGCATCT
CAAGGCTATGCTTAATGTGCCTGAGGAAGAGGAGGAGGAAGGAAAGGAAG
AAGTGCACAAGCAAAAGGAGGGACAGCAGGACGGTAAGGTTGACGAGGCG
GCAGCAGAGTCATCCACAATGATGGAGGTAGATGAATTACAGCCGGCAAC
ACCAACGGCAGAGGAAGAAGCAGAGACAGCAGTAGCTCCAGTAGACGATG
CCGTCGCGCGCGTCCTAGCTGCTGTGGCGGGGGCTGAGGCTGCTGACTTT
CACCTTCCTGCACCAGACAGTCATCAGTCACAGATCGACACGATGAACGA
GGTTTCAACAGAAACAAAAGCAGGAATCGCAGCAGCAGCGATAATGCCAG
AAACAGCAAGGATAGCAACAGCATCATCAACAGCAGGACCAACAGCAGCA
ACCGCCACACTCCTTCCTCCGCCCTCCCAGCTACCACCACCCCAATCAAC
AGACCTTGAGCCACCCCCTTTGCTCTTCACCACTGAAGCCCTTCTCAATA
TGGAAGACGCCTATGGGACAGGCCTCAGCGACTCCACCCTCGAGTCAGTT
AAGGCCCTGCTGGCCGACCCCACCATCCTGGACATCATAGAAGGCCAATG
GCTCATCCAAGCCATGAAGCAGCAACTCGCCTCCACTATCGTGACCCATT
TGGACGACAAACACGCCGAAGCCGCTCAACGCCTCGCCCTCCGCCACGCG
CAAGCCCAACAACAGCTTTCCTCCCTCCCCTCGATCCCTCCCTCTTTCCA
CAAGCAGCTCGAGCAAGAGCGACACGCACTAGCCCTCGCCTGCGAAAGAG
AGCGACGCCAAGTAGGTGCACAACTTTCAATCGAACTATGGCAGCTCCTT
GAAGCCCAACAGGCCGTGTTGGGGGAAGGAGAAGGAGGGGCTGGGCTACC
CGAGGTGAAGGTAACGAGGGATCGAGCAGCAGTAGCCACGCAGCAGCAGG
TCCTGAGGGTCGTCACAGCCAACATGCAGCTCTATCACTTCCATCAAAGG
AGGCAAGCACTAACGGAAGAAGTAGAAAAGCACGCTGAGCTTACCCGACA
GCTACAGGGTCCTCCTGCTCCTCCTCCTGCTGCTGCCGGTGGTGGTGGTG
ACTCGGCCTCCCCCTTGGTCCTACCCCCACCCACCAAGGTGGAAGTACTC
CCCTCTCCCTTCTTCCTCCAGTCCTCCTCCTCCCCCTCCTCCTCCTCTCC
TCTCCCGAGTAACCTACGTGGAGGAGGGAATGACAGCAGTAAGCGGGAGC
GGGTTTCGAGGTGGGAAACCGCCGTCCCTTTGACAGCTGAAGACAAAGTC
AAGGGAGGTATTAAAGGAAAAAGAAATCATAGAGGAGGGGAAGAAAGTTG
TGGGGAAGGAGGAGGAAGAGGGGGAGGAGGAGGAGGGAGAGGAAGCAGAC
AAAGCAGGGCAAAAATAGAAGGGAGGGGCAACACACGCGAGCGCGGCGCT
GCTGCAGCTGCTGCAGCTGCTGCTGCTACTTCTGCTGCGAGTCCTCGGGT
ACGGTCGCCACCGCGGAGGAGCAGTCGAAGGAATGGGGGTAGGGAGAAGG
GGGGAGAAAGAGGCAAGGGAGGTGGGAGGGAGAGTGAAGAGCCTAACTTA
CCGCCTAATGAAGACAATAGGACGATTCTTCGGAAGATGATGCGGCACTT
CAAATAA

Synonyms

Publications