NO19G01820, NO19G01820 (gene) Nannochloropsis oceanica

Overview
NameNO19G01820
Unique NameNO19G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr19:542405..543139 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:542405..543139 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_009845689.1 (hypothetical protein H257_18348 [Aphanomyces astaci] >ETV64832.1 hypothetical protein H257_18348 [Aphanomyces astaci])

HSP 1 Score: 104.0 bits (258), Expect = 6.800e-19
Identity = 66/174 (37.93%), Postives = 91/174 (52.30%), Query Frame = 0
Query:   68 RLAFTPNVDKFARLQFSDTYSNV---PMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLG-ELY-SGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSY 237
            R  F P VD++ +L+  ++Y++    P       Y     + + SM   S  K Y      G+ +PILTA++++ +G V GI++D+GC LC +S  C  N Y      LY S  G  S C+    EC   T      C L VYV WTGTDA GN+L+S+  R S F  YSVNSY
Sbjct:   53 RAVFAPVVDQYVQLRLYESYTDTRIRPTNSSAAAY-----MTISSMSSRSVYKQYTTAK--GKAYPILTAVVSVKQGEVQGISWDDGCYLC-DSTTCEANLYSTPAIPLYNSAFGDGSTCYKESPECLNTT----GLCDLAVYVGWTGTDANGNYLSSAGMRISQFQKYSVNSY 214          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: GBG31539.1 (Hypothetical Protein FCC1311_077632 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 103.6 bits (257), Expect = 8.900e-19
Identity = 82/233 (35.19%), Postives = 110/233 (47.21%), Query Frame = 0
Query:   17 LFLAVLLLLQTVV----RACLPLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGV-TSFQKLYRQEDPLGRT--FPILTAIINLDRGVVTGITFDNGCVLCNNS-----DRCVENTYDF-LGELYSGVGAT---SDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSV 234
            +FLA +L++  +     +AC+P    +  VTL   T VC+V           N +     P  D+++RL +  TY          L+      H+ESMGV +SF+K Y  E   G    FPILTAIIN+D   VT I++D+GC   + S       CV N Y F        V A    SD  LT   C +        C L VYV WTG D+ GN+  SS RRFS+F  Y +
Sbjct:    1 MFLAAVLVVTALCTRSGQACMP-SNSDGSVTLGETTFVCLV---------RDNAAYALSKPRADRYSRLTYDQTYEENRDDCQEQLF------HIESMGVQSSFRKRYCTEADDGTLLFFPILTAIINVDENGVTDISWDDGCYFTDGSVSESVQTCVANAYGFNTSSPIDSVPAPSQGSDTALTREVCDSEPDG---FCDLAVYVAWTGKDSNGNYFGSSGRRFSVFRDYDL 214          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: CCA20136.1 (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 102.4 bits (254), Expect = 2.000e-18
Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 0
Query:   64 SNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSGVGATS--------DCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            +N  R  FTP  DKF+ +   +++++  +GG  +      +V V S+G  +  K Y  E+     FP LTAII++ +G+V G+T+D+GC  C+  D C+ N       LYS +  TS         C+   + C         AC LT+Y+ WTGTD  GN+L+S+  R S F  +S  SY + +
Sbjct:   51 NNEFRAVFTPTADKFSVISIRESWNDSRIGGNPE----GASVSVSSLGNRTLYKRYAHENV---RFPYLTAIISVKQGLVQGVTWDDGCFFCSR-DACLPN-------LYSSITNTSLQLPHQGFSCYTNTSICNDTVS----ACDLTIYIGWTGTDKDGNYLSSAGLRMSQFQKFSFASYYSSI 216          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: OQS07012.1 (hypothetical protein THRCLA_20230 [Thraustotheca clavata])

HSP 1 Score: 102.1 bits (253), Expect = 2.600e-18
Identity = 76/231 (32.90%), Postives = 116/231 (50.22%), Query Frame = 0
Query:   16 ILFLAVLLLLQTVVRACLPLDGMNAGVTLNRG--THVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVH--VESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDF--LGELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            I +LAVL  +   + + L  D  N    L +G  T+VC+           ++  R  FTP VD F +L+  ++Y +      + +   + A +  + SM   S  KLY   D  G+ FP  TA+I +  G++ GI++D+GC LC NS  C  N Y    +  + S  G+ + CF     C++       +C L ++V WTGTD  GN+L+S+  R S F  YSV SYV+ L
Sbjct:    4 IAYLAVLAQVHGAIISGLCND-KNTSTPLVKGDQTYVCI---------NINDKYRAVFTPVVDDFVQLRVYNSYKD------SRIENSSFASYLTLSSMTSRSVYKLY--TDQTGKAFPSFTAVITVVDGLIQGISWDDGCYLC-NSTSCASNIYSAPKVPLVNSAFGSGNTCFHNQTACSST----ENSCDLGIFVGWTGTDYNGNYLSSAGMRVSQFQQYSVTSYVDDL 211          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: EJK69514.1 (hypothetical protein THAOC_09222 [Thalassiosira oceanica])

HSP 1 Score: 97.4 bits (241), Expect = 6.400e-17
Identity = 64/172 (37.21%), Postives = 84/172 (48.84%), Query Frame = 0
Query:   72 TPNVDKFARLQFSDTYSNVPMGGITDL-YGPNVAVHV--ESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGEL--YSGVG-ATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYV 238
            TPNV     L    +Y     G I +  Y  + A H+   S    SFQ+ Y         +P LTAII++D+G+V GI +DN C+ C     C+ NTY+F G L     +G   + C +    C      D   C+LT+YV WTGTDA GN L SS  RFS+F    V   V
Sbjct:  134 TPNVS--YALSLPPSYCPAAFGAIAEKNYFQSEATHIFAASQSKLSFQRKYYDTSD-SFLYPYLTAIIDVDQGIVQGIAWDNACIFCEEK-HCLPNTYNFNGTLATQEQIGQPVNGCRVEQLTCLEMKGGDNDVCELTLYVVWTGTDADGNVLLSSDSRFSMFPPNRVQEKV 301          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: OAO14849.1 (hypothetical protein AV274_3554 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 94.7 bits (234), Expect = 4.100e-16
Identity = 68/233 (29.18%), Postives = 104/233 (44.64%), Query Frame = 0
Query:   21 VLLLLQTVVRACLPLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMG-----VTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLC------NNSDRCVENTYDFLGELYSGVGA--TSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            +LL++  V   C+P  GM   +   +  HVC  L+  E         R  F P VD++ R  +S+ Y  V     + +Y        ++ G       S  KLY         F  LTA+IN+++GVV  I++D+GC+ C       NS    E     + E  +   A   ++CF    +CA       + C LT+++ W G+D KG    SS+ R S F S S+ S +N L
Sbjct:    6 LLLIVSVVFSQCVPSTGME-DILRGKEHHVCFTLNGSE---------RSLFHPKVDEYGRYTYSNLYERVRTNTTSPVYVQLSVSSYDASGEKIVTANSVPKLYTGLSHSNHFFTYLTAVINVEKGVVKSISWDDGCLTCFASGCGQNSVITTEGRLHLISESDTRYKAYRGNNCFQVSTDCAEG----KKNCDLTIFLVWEGSDKKGRVFHSSNLRLSRFQSGSLESAINAL 224          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: OAO16665.1 (hypothetical protein AV274_1606 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 94.4 bits (233), Expect = 5.400e-16
Identity = 68/233 (29.18%), Postives = 103/233 (44.21%), Query Frame = 0
Query:   21 VLLLLQTVVRACLPLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMG-----VTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLC------NNSDRCVENTYDFLGELYSGVGA--TSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            +LL++  V   C+P  GM   +   +  HVC  L+  E         R  F P VD++ R  +S+ Y  V     + +Y        ++ G       S  KLY         F  LTA+IN+++GVV  I++D+GC+ C       NS    E     + E  +   A    +CF    +CA       + C LT+++ W G+D KG    SS+ R S F S S+ S +N L
Sbjct:  240 LLLIVSVVFSQCVPSTGME-DILRGKEHHVCFTLNGSE---------RSLFHPKVDEYGRYTYSNLYERVRTNTTSPVYVQLSVSSYDASGEKIVTANSVPKLYTGLSHSNHFFTYLTAVINVEKGVVKSISWDDGCLTCFASGCGQNSVITTEGRLHLISESDTRYKAYRGDNCFQVSTDCAEG----KKNCDLTIFLVWEGSDKKGRVFHSSNLRLSRFQSGSLESAINAL 458          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_024583478.1 (RxLR-like protein [Plasmopara halstedii] >CEG47109.1 RxLR-like protein [Plasmopara halstedii])

HSP 1 Score: 91.3 bits (225), Expect = 4.600e-15
Identity = 83/257 (32.30%), Postives = 120/257 (46.69%), Query Frame = 0
Query:   13 TSMILFLAVLLLLQTVVRA-CLPLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVA-VHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGEL----YSGVGAT-----SDCFLTDAE------------------CAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            T+++L  A +  +QT V + C P D  +  V     T+VCV           ++  R  FTP  DKF  L+ SD++++  +G       P+ A V V S+   +  KLY      GR  P +TAII++  GVV G+++D GC  C  +D C  N +    E      SG G T      +C  T+A                     ANT A    C +TVY+ WTGTD  G +L S+S R S FS YS+ S+ + +
Sbjct:    6 TAILLSAARVEAMQTNVSSICSPSD-PSPLVVKGSITYVCV---------NVNDKYRTLFTPIADKFIVLRISDSWNDTRIGA-----NPSGAFVTVSSLKYRTNYKLYSSTSK-GRLSPYMTAIISVKMGVVQGVSWDEGCYFC-TADMCDYNLFSKPEETAMTRLSGQGKTCYTFVDNCSATNASKLSIAVGDGSIAGSNATVSGANTSAQ---CDITVYLGWTGTDKYGEYLGSASLRMSQFSKYSIGSFFSSI 242          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_002296517.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87213.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.5 bits (223), Expect = 7.800e-15
Identity = 75/250 (30.00%), Postives = 112/250 (44.80%), Query Frame = 0
Query:   13 TSMILFLAVLLLLQTVVR------------ACL-PLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQ----FSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGR-TFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSG---VGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYV-NGL 241
            TS++L +A LLL  T               +C+ PL+     V     T VC+ +      +   +Y R +     D+F+  +    F+D  S+ P G        + A H+ +   T+   L R  D   +  +P LTAII++  G++ GI +D+ CV C  S RC+ NTY+F G + +       T  C+LT  EC          C L ++V WTGT   G  L SS  RFS F    +   V NG+
Sbjct:    2 TSLLLTIATLLLNLTPTTHAQSTTTSNNPYSCIDPLNLYTTEVRKGENTTVCLYVGPDGDWNSDISYKRFSVNLVADEFSSYRIPGSFNDIVSSNPFG--------SDATHIFASSQTALSFLRRYYDTTTQHIYPYLTAIIDVRDGLIRGIAWDDACVFCQKS-RCLSNTYNFNGAVATKDQISQPTDGCYLTRNECVTLHAGGSDECDLKLFVVWTGTAVGGKVLLSSDSRFSAFPPNRIQENVKNGV 242          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_009531595.1 (hypothetical protein PHYSODRAFT_352038 [Phytophthora sojae] >EGZ14166.1 hypothetical protein PHYSODRAFT_352038 [Phytophthora sojae])

HSP 1 Score: 88.6 bits (218), Expect = 3.000e-14
Identity = 66/220 (30.00%), Postives = 101/220 (45.91%), Query Frame = 0
Query:   48 THVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVA-VHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSG--VGATSDCFLTDAECAA-NTQAD-----------------------PRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            T+VC+           ++  R  FTP  DKF  L+ SD++++  +G       P+ A + V S+   +  KLY       R  P +TAII++ +GVV G+++D GC  C  ++ C  N Y    E  +G   G    C+     C+  +T A                           C LT+YV WTGTD  G++L S+S R S FS YS+ S+ + +
Sbjct:   29 TYVCI---------NVNDEYRTLFTPVADKFTVLRISDSWNDTRIGA-----NPSGAFLTVSSLKYRTNYKLYSSAS-TNRISPYMTAIISVKKGVVQGVSWDEGCYFC-TAEMCDYNLYSKPEESATGRLSGQGQTCYSAVESCSGYSTNASDAXXXXXXXXXXXXXXXXXXXXXXXXCDLTIYVGWTGTDKNGDYLGSASLRMSQFSKYSIGSFFSNI 232          
The following BLAST results are available for this feature:
BLAST of NO19G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009845689.16.800e-1937.93hypothetical protein H257_18348 [Aphanomyces astac... [more]
GBG31539.18.900e-1935.19Hypothetical Protein FCC1311_077632 [Aurantiochytr... [more]
CCA20136.12.000e-1833.51conserved unknown protein putative [Albugo laibach... [more]
OQS07012.12.600e-1832.90hypothetical protein THRCLA_20230 [Thraustotheca c... [more]
EJK69514.16.400e-1737.21hypothetical protein THAOC_09222 [Thalassiosira oc... [more]
OAO14849.14.100e-1629.18hypothetical protein AV274_3554 [Blastocystis sp. ... [more]
OAO16665.15.400e-1629.18hypothetical protein AV274_1606 [Blastocystis sp. ... [more]
XP_024583478.14.600e-1532.30RxLR-like protein [Plasmopara halstedii] >CEG47109... [more]
XP_002296517.17.800e-1530.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_009531595.13.000e-1430.00hypothetical protein PHYSODRAFT_352038 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004522NSK004522Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01820.1NO19G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599252gene_7582Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g29gene6774Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01820.1NO19G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01820 ID=NO19G01820|Name=NO19G01820|organism=Nannochloropsis oceanica|type=gene|length=735bp
ATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGCTACCTCCATGATCCT
CTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCGTCCGCGCATGCCTAC
CCCTGGACGGTATGAACGCGGGCGTGACGCTCAACAGGGGCACACATGTC
TGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGGCACTAGCAACTACTC
CCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTGCGCGACTGCAATTTT
CAGACACCTACTCAAACGTTCCGATGGGGGGCATCACGGATTTATACGGG
CCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGTGACTTCTTTTCAAAA
GCTCTACCGGCAGGAGGACCCTCTGGGCCGGACATTCCCCATCTTGACTG
CCATAATTAATCTGGACCGTGGCGTCGTGACGGGCATCACCTTCGATAAT
GGCTGTGTGCTTTGCAACAATAGCGACCGGTGCGTGGAGAACACGTACGA
TTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCACCTCGGATTGCTTCT
TGACAGACGCCGAGTGCGCGGCCAATACTCAGGCCGACCCCAGGGCCTGT
CAGCTCACTGTATACGTGACGTGGACGGGCACAGATGCCAAGGGTAACTT
CTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTAGTTCTTACTCTGTTA
ATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
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protein sequence of NO19G01820.1

>NO19G01820.1-protein ID=NO19G01820.1-protein|Name=NO19G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPASSRRGALPATSMILFLAVLLLLQTVVRACLPLDGMNAGVTLNRGTHV
CVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYG
PNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDN
GCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQADPRAC
QLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV*
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Synonyms
Publications