NO19G01820.1, NO19G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01820.1
Unique NameNO19G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr19:542405..543139 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:542405..543139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01820.1 vs.
Match: EWM23681.1 (hypothetical protein Naga_100030g29 [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 8.400e-94
Identity = 173/244 (70.90%), Postives = 198/244 (81.15%), Query Frame = 0 
Query:    1 MPASSRRGALPATSMILFLAVLLLLQTVVRACLPLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV 245
            M ASSR       S    L  +    T+V  CLP  G+N+GVT  +GT+VC+V S P W +GTSN+SR+AFTP VD+F RLQFSDT+SN+   G+ +LYGPNVAVHVESMGV SFQKLYRQED LGRTF +LTAIINLDRGVVTGITFDNGC LC+NSDRCVENTYDF GE Y+GVGATSDCFLTDAECA N QAD  ACQL++Y+TWTGTDA+GNFLTSSSRRFSL S++SV S+VNGLVKGV
Sbjct:    1 MSASSRGYLAAFLSPRTLLFCIFQCFTLVYGCLPPGGVNSGVTQAQGTYVCIVFSAPAWQEGTSNFSRVAFTPTVDRFTRLQFSDTFSNLTSQGVANLYGPNVAVHVESMGVASFQKLYRQEDSLGRTFSVLTAIINLDRGVVTGITFDNGCPLCDNSDRCVENTYDFTGERYTGVGATSDCFLTDAECALNAQADRNACQLSLYITWTGTDAQGNFLTSSSRRFSLLSAFSVKSFVNGLVKGV 244
The following BLAST results are available for this feature:
BLAST of NO19G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23681.18.400e-9470.90hypothetical protein Naga_100030g29 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01820NO19G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01820.1NO19G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01820.1.cds1NO19G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01820.1 ID=NO19G01820.1|Name=NO19G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
ATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGCTACCTCCATGATCCT
CTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCGTCCGCGCATGCCTAC
CCCTGGACGGTATGAACGCGGGCGTGACGCTCAACAGGGGCACACATGTC
TGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGGCACTAGCAACTACTC
CCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTGCGCGACTGCAATTTT
CAGACACCTACTCAAACGTTCCGATGGGGGGCATCACGGATTTATACGGG
CCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGTGACTTCTTTTCAAAA
GCTCTACCGGCAGGAGGACCCTCTGGGCCGGACATTCCCCATCTTGACTG
CCATAATTAATCTGGACCGTGGCGTCGTGACGGGCATCACCTTCGATAAT
GGCTGTGTGCTTTGCAACAATAGCGACCGGTGCGTGGAGAACACGTACGA
TTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCACCTCGGATTGCTTCT
TGACAGACGCCGAGTGCGCGGCCAATACTCAGGCCGACCCCAGGGCCTGT
CAGCTCACTGTATACGTGACGTGGACGGGCACAGATGCCAAGGGTAACTT
CTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTAGTTCTTACTCTGTTA
ATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
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protein sequence of NO19G01820.1

>NO19G01820.1-protein ID=NO19G01820.1-protein|Name=NO19G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPASSRRGALPATSMILFLAVLLLLQTVVRACLPLDGMNAGVTLNRGTHV
CVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYG
PNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDN
GCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQADPRAC
QLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV*
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mRNA from alignment at chr19:542405..543139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01820.1 ID=NO19G01820.1|Name=NO19G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp|location=Sequence derived from alignment at chr19:542405..543139- (Nannochloropsis oceanica)
ATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGCTACCTCCATGATCCT
CTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCGTCCGCGCATGCCTAC
CCCTGGACGGTATGAACGCGGGCGTGACGCTCAACAGGGGCACACATGTC
TGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGGCACTAGCAACTACTC
CCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTGCGCGACTGCAATTTT
CAGACACCTACTCAAACGTTCCGATGGGGGGCATCACGGATTTATACGGG
CCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGTGACTTCTTTTCAAAA
GCTCTACCGGCAGGAGGACCCTCTGGGCCGGACATTCCCCATCTTGACTG
CCATAATTAATCTGGACCGTGGCGTCGTGACGGGCATCACCTTCGATAAT
GGCTGTGTGCTTTGCAACAATAGCGACCGGTGCGTGGAGAACACGTACGA
TTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCACCTCGGATTGCTTCT
TGACAGACGCCGAGTGCGCGGCCAATACTCAGGCCGACCCCAGGGCCTGT
CAGCTCACTGTATACGTGACGTGGACGGGCACAGATGCCAAGGGTAACTT
CTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTAGTTCTTACTCTGTTA
ATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
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Coding sequence (CDS) from alignment at chr19:542405..543139-

>NO19G01820.1 ID=NO19G01820.1|Name=NO19G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr19:542405..543139- (Nannochloropsis oceanica)
ATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGCTACCTCCATGATCCT
CTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCGTCCGCGCATGCCTAC
CCCTGGACGGTATGAACGCGGGCGTGACGCTCAACAGGGGCACACATGTC
TGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGGCACTAGCAACTACTC
CCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTGCGCGACTGCAATTTT
CAGACACCTACTCAAACGTTCCGATGGGGGGCATCACGGATTTATACGGG
CCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGTGACTTCTTTTCAAAA
GCTCTACCGGCAGGAGGACCCTCTGGGCCGGACATTCCCCATCTTGACTG
CCATAATTAATCTGGACCGTGGCGTCGTGACGGGCATCACCTTCGATAAT
GGCTGTGTGCTTTGCAACAATAGCGACCGGTGCGTGGAGAACACGTACGA
TTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCACCTCGGATTGCTTCT
TGACAGACGCCGAGTGCGCGGCCAATACTCAGGCCGACCCCAGGGCCTGT
CAGCTCACTGTATACGTGACGTGGACGGGCACAGATGCCAAGGGTAACTT
CTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTAGTTCTTACTCTGTTA
ATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
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Synonyms
Publications