NO19G01820, NO19G01820 (gene) Nannochloropsis oceanica

Overview
NameNO19G01820
Unique NameNO19G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr19:542405..543139 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:542405..543139 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO19G01820 vs. NCBI_GenBank
Match: EWM23681.1 (hypothetical protein Naga_100030g29 [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 8.400e-94
Identity = 173/244 (70.90%), Postives = 198/244 (81.15%), Query Frame = 0
Query:    1 MPASSRRGALPATSMILFLAVLLLLQTVVRACLPLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV 245
            M ASSR       S    L  +    T+V  CLP  G+N+GVT  +GT+VC+V S P W +GTSN+SR+AFTP VD+F RLQFSDT+SN+   G+ +LYGPNVAVHVESMGV SFQKLYRQED LGRTF +LTAIINLDRGVVTGITFDNGC LC+NSDRCVENTYDF GE Y+GVGATSDCFLTDAECA N QAD  ACQL++Y+TWTGTDA+GNFLTSSSRRFSL S++SV S+VNGLVKGV
Sbjct:    1 MSASSRGYLAAFLSPRTLLFCIFQCFTLVYGCLPPGGVNSGVTQAQGTYVCIVFSAPAWQEGTSNFSRVAFTPTVDRFTRLQFSDTFSNLTSQGVANLYGPNVAVHVESMGVASFQKLYRQEDSLGRTFSVLTAIINLDRGVVTGITFDNGCPLCDNSDRCVENTYDFTGERYTGVGATSDCFLTDAECALNAQADRNACQLSLYITWTGTDAQGNFLTSSSRRFSLLSAFSVKSFVNGLVKGV 244          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: CBJ29334.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 153.3 bits (386), Expect = 9.800e-34
Identity = 83/204 (40.69%), Postives = 125/204 (61.27%), Query Frame = 0
Query:   42 VTLNRGTHVCVVLSTPEW-VDG-TSNYSRLAFTPNVDKFARLQFSDTYSN---VPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQAD--PRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVN 239
            VT+   T VC+V++   W VD   + YS++   P+ D+F+R     +++    +    I   +G  V VHVESMG  SFQK +R  +   +TFP+ TAII++D G VTGI++D+GC  C +S +C +NTYD+ G+L  G G   DC+  D++C  +   D     CQLTVYV WTGTD+KGNF TS ++R S+++  +V   ++
Sbjct:   49 VTIGEETSVCLVVNGLGWEVDADLTFYSQVLILPDADEFSRFSVKGSWNASRVIEDDPILTTFGTEVGVHVESMGKYSFQKAFRLREE-EKTFPLHTAIISVDEGEVTGISWDDGCHFCGSS-QCEDNTYDYTGQLIGGEGNGQDCYWPDSDCLQDGVEDQVSALCQLTVYVVWTGTDSKGNFFTSFAKRLSMYAGETVEGLIS 250          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: OEU08436.1 (hypothetical protein FRACYDRAFT_249707 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 131.3 bits (329), Expect = 4.000e-27
Identity = 78/205 (38.05%), Postives = 111/205 (54.15%), Query Frame = 0
Query:   34 PLDGMNAGVTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNV---PMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSGVGA---TSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYS 233
            P+ G  A VT+ + T +C+VL++         Y RL F P  D ++R    D+++ +   P   +T ++  N+ VH ES    SFQKLY   +   + FP LTAII +++G VTGIT+DN CV C N D C +NTY F G + +   A      C  +   C  + +A+   C L +YV WTGTD+ G   TSS+ RFS F   S
Sbjct:   56 PVKGYEA-VTIGQPTTICLVLASNGDWSTDMEYMRLNFQPIADDYSRFHVPDSFTQLIGSPKEALTKIFPGNITVHSESQTALSFQKLY--YNGADKVFPFLTAIIAVEKGNVTGITWDNACVFCAN-DECEDNTYGFNGGIATEADAQQPVGGCHSSVVACKDSAEAE---CDLMLYVVWTGTDSNGKDFTSSANRFSAFPKQS 253          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: GAX25681.1 (hypothetical protein FisN_15Lh050 [Fistulifera solaris])

HSP 1 Score: 119.8 bits (299), Expect = 1.200e-23
Identity = 71/208 (34.13%), Postives = 113/208 (54.33%), Query Frame = 0
Query:   42 VTLNRGTHVCV-VLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLG----ELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV 245
            + + + T VC  V +T +W  G  +Y RL+F P  D+++R+   ++++++ +   T  Y  +V +   +   + F ++Y  +    R FP LTAII++  G+V G+T+D+ CV C +SD+C E TYDF G    +  SG   T  C +T+ EC          C LT+YV WTGTDA G    SS+ RFS F    ++  V+  +  V
Sbjct:   49 IEIGKQTIVCFHVGNTKDWARGV-DYIRLSFQPEADQYSRMHIPNSFNDLVVESETVFYQRDVTIAAAAQDKSGFLRVY-YDAVEARVFPYLTAIIDVKDGMVRGVTWDDSCVFC-SSDKCAEITYDFNGVQQTQATSG-QPTRGCEITEDECNVLASEGKTLCDLTIYVVWTGTDANGVAFQSSASRFSRFPPQELSDRVSNALPQV 252          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: GAX23050.1 (hypothetical protein FisN_15Hh050 [Fistulifera solaris])

HSP 1 Score: 119.0 bits (297), Expect = 2.000e-23
Identity = 71/208 (34.13%), Postives = 113/208 (54.33%), Query Frame = 0
Query:   42 VTLNRGTHVCV-VLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLG----ELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV 245
            + + + T VC  V +T +W  G  +Y RL+F P  D+++R+   ++++++ +   T  Y  +V +   +   + F ++Y  +    R FP LTAII++  G+V G+T+D+ CV C +SD+C E TYDF G    +  SG   T  C +T+ EC          C LT+YV WTGTDA G    SS+ RFS F    ++  V+  +  V
Sbjct:   44 IEIGKQTIVCFHVGNTKDWARGV-DYIRLSFQPEADQYSRMHIPNSFNDLVVESETVFYQRDVTIAAAAQDKSGFLRVY-YDAVEARVFPYLTAIIDVKDGMVRGVTWDDSCVFC-SSDKCPEITYDFNGVQQTQATSG-QPTRGCEITEDECNVLASEGKTLCDLTIYVVWTGTDANGVAFQSSASRFSRFPPQELSDRVSNALPQV 247          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_008618153.1 (hypothetical protein SDRG_13833 [Saprolegnia diclina VS20] >EQC28505.1 hypothetical protein SDRG_13833 [Saprolegnia diclina VS20])

HSP 1 Score: 112.5 bits (280), Expect = 1.900e-21
Identity = 80/230 (34.78%), Postives = 120/230 (52.17%), Query Frame = 0
Query:   19 LAVLLLLQTVVRACLPLDGM----NAGVTLNRG--THVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTY--DFLGELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            LAV++ L  VV     + G+    N+   L +G  T++C+           ++  R  FTP VD + +L+  ++YS+     I +   P+  + + S+   S  KLY   D  GR FP LTAII +  G++ GI++D+GC LC+ +  C  N Y    L  L S  G  S C++    C A       AC L +YV WTGTD  GN+L+S+  R S F ++SV+SYV+ L
Sbjct:    5 LAVVVALIAVVADGAIVSGLCNDKNSSTPLVKGDQTYICI---------NVNDMYRAVFTPTVDDYVQLRMYNSYSD---NRIVNASAPSF-LTLSSITTRSVYKLY--TDVTGRAFPTLTAIITVANGIIQGISWDDGCYLCDAAS-CSSNLYASPKLPLLNSAFGDGSTCYMNRTTCTAT----DNACDLGIYVGWTGTDYNGNYLSSAGMRVSQFQAFSVSSYVSDL 214          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_012208869.1 (hypothetical protein SPRG_14351 [Saprolegnia parasitica CBS 223.65] >KDO20413.1 hypothetical protein SPRG_14351 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 110.9 bits (276), Expect = 5.600e-21
Identity = 80/230 (34.78%), Postives = 118/230 (51.30%), Query Frame = 0
Query:   19 LAVLLLLQTVVRACLPLDGM----NAGVTLNRG--THVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGE--LYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            LAV+L L  VV     + G+    N    L +G  T++C+           ++  R  FTP VD + +L+  ++YS+     I +    +  + + SM   S  KLY   D  GR FP LTAII +  G++ GI++D+GC LC+ +  C+ N Y       L S  G  S C++    C A       AC L +YV WTGTD  GN+L+S+  R S F ++SV+SYV+ L
Sbjct:    5 LAVVLALIAVVADGAIISGLCNDKNTSTPLVKGDQTYICI---------NVNDMYRAVFTPTVDDYVQLRMYNSYSD---NRIVNASAASF-LTLSSMTSRSVYKLY--ADVTGRAFPTLTAIITVANGIIQGISWDDGCYLCDAAS-CMSNLYASPKRPLLNSAFGDGSTCYMNRTTCTAT----DNACDLGIYVGWTGTDYNGNYLSSAGMRVSQFQAFSVSSYVSDL 214          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: AIG56500.1 (secreted protein [Achlya hypogyna] >OQR80816.1 hypothetical protein ACHHYP_17180 [Achlya hypogyna])

HSP 1 Score: 109.4 bits (272), Expect = 1.600e-20
Identity = 62/175 (35.43%), Postives = 100/175 (57.14%), Query Frame = 0
Query:   68 RLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTY--DFLGELYSGVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            R  FTP VD + +L+   +Y ++ +  +++       + + SM   +  KLY   D  GR FP LTAII++ +GV+ GI++D+GC LC +S  C+ N Y    +  + S  G+ + C++    C     +   AC + +YV WTGTD  GN+L+S+  R S F ++SV+SYV+ L
Sbjct:   50 RAVFTPTVDSYVQLRMYKSYDDLRIQNVSE----PAYLTLSSMTSRTPYKLY--TDLTGRAFPTLTAIISVAKGVIQGISWDDGCYLC-DSKSCLPNLYAAPRIALVNSAFGSGNTCYMNRTAC----MSTDNACDIGIYVGWTGTDYNGNYLSSAGMRISQFQAFSVSSYVSDL 213          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: XP_008876432.1 (hypothetical protein H310_11507 [Aphanomyces invadans] >ETV94841.1 hypothetical protein H310_11507 [Aphanomyces invadans])

HSP 1 Score: 107.8 bits (268), Expect = 4.700e-20
Identity = 74/227 (32.60%), Postives = 113/227 (49.78%), Query Frame = 0
Query:   29 VRACLPLDGMNAG--------------VTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQ-EDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDF-LGELYS-GVGATSDCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVN 239
            + A L   G+NAG              V     T++C+           ++  R  F P VDK+ +L+  D+Y +      + L   N +    ++   + + +Y+Q     G+ +PILTA++++ +G V GI++D+GC LC+ +  C  N Y      LYS   G  S C+   AEC   T      C L+VYV WTGTDA GN+L+S+  R S F  YSVNSY++
Sbjct:   11 ITASLCASGVNAGNVSGFCNDRNGTTPVVKGDQTYICI---------NINDQYRAVFAPVVDKYVQLRLHDSYID------SRLRPTNSSAAYMTISSMASRSVYKQYTTARGKAYPILTAVVSVKQGEVQGISWDDGCYLCDMAS-CDPNLYSMPTIPLYSTAFGDGSTCYKDHAECTNTT----GLCDLSVYVGWTGTDANGNYLSSAGMRISQFQKYSVNSYIS 217          
BLAST of NO19G01820 vs. NCBI_GenBank
Match: GAY02767.1 (Hypothetical protein PINS_010608 [Pythium insidiosum])

HSP 1 Score: 105.9 bits (263), Expect = 1.800e-19
Identity = 66/200 (33.00%), Postives = 104/200 (52.00%), Query Frame = 0
Query:   42 VTLNRGTHVCVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYGPNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDNGCVLCNNSDRCVENTYDFLGELYSGVGATS-DCFLTDAECAANTQADPRACQLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGL 241
            VT  + T VCV           ++  R  F P  D+F   + ++++++  +G   D  G  +   + SM + S  KLY  +   G  +P LTAII++ +G V G+++D+GC  C  S+ C  N Y F   + S V      C+   A C+     +  +C LT+Y+ WTGTD+KGN+L+S+  R S F+ YS+ SY   L
Sbjct:   41 VTKGQKTFVCV---------NVNDKYRTVFMPVADQFTVFRIANSWNDTRIG--ADPAGAYLT--ISSMAMRSAYKLYASD--AGHIYPFLTAIISVKKGQVQGVSWDDGCYFC-GSEMCEPNLYRFASNVSSRVAKEGYTCYNNVATCSG---PNATSCDLTIYIGWTGTDSKGNYLSSAGLRMSQFTKYSIGSYFKKL 221          
The following BLAST results are available for this feature:
BLAST of NO19G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23681.18.400e-9470.90hypothetical protein Naga_100030g29 [Nannochlorops... [more]
CBJ29334.19.800e-3440.69conserved unknown protein [Ectocarpus siliculosus][more]
OEU08436.14.000e-2738.05hypothetical protein FRACYDRAFT_249707 [Fragilario... [more]
GAX25681.11.200e-2334.13hypothetical protein FisN_15Lh050 [Fistulifera sol... [more]
GAX23050.12.000e-2334.13hypothetical protein FisN_15Hh050 [Fistulifera sol... [more]
XP_008618153.11.900e-2134.78hypothetical protein SDRG_13833 [Saprolegnia dicli... [more]
XP_012208869.15.600e-2134.78hypothetical protein SPRG_14351 [Saprolegnia paras... [more]
AIG56500.11.600e-2035.43secreted protein [Achlya hypogyna] >OQR80816.1 hyp... [more]
XP_008876432.14.700e-2032.60hypothetical protein H310_11507 [Aphanomyces invad... [more]
GAY02767.11.800e-1933.00Hypothetical protein PINS_010608 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004522NSK004522Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01820.1NO19G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599252gene_7582Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g29gene6774Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01820.1NO19G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01820 ID=NO19G01820|Name=NO19G01820|organism=Nannochloropsis oceanica|type=gene|length=735bp
ATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGCTACCTCCATGATCCT
CTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCGTCCGCGCATGCCTAC
CCCTGGACGGTATGAACGCGGGCGTGACGCTCAACAGGGGCACACATGTC
TGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGGCACTAGCAACTACTC
CCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTGCGCGACTGCAATTTT
CAGACACCTACTCAAACGTTCCGATGGGGGGCATCACGGATTTATACGGG
CCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGTGACTTCTTTTCAAAA
GCTCTACCGGCAGGAGGACCCTCTGGGCCGGACATTCCCCATCTTGACTG
CCATAATTAATCTGGACCGTGGCGTCGTGACGGGCATCACCTTCGATAAT
GGCTGTGTGCTTTGCAACAATAGCGACCGGTGCGTGGAGAACACGTACGA
TTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCACCTCGGATTGCTTCT
TGACAGACGCCGAGTGCGCGGCCAATACTCAGGCCGACCCCAGGGCCTGT
CAGCTCACTGTATACGTGACGTGGACGGGCACAGATGCCAAGGGTAACTT
CTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTAGTTCTTACTCTGTTA
ATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
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protein sequence of NO19G01820.1

>NO19G01820.1-protein ID=NO19G01820.1-protein|Name=NO19G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPASSRRGALPATSMILFLAVLLLLQTVVRACLPLDGMNAGVTLNRGTHV
CVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYG
PNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDN
GCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQADPRAC
QLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV*
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Synonyms
Publications