NO19G01810, NO19G01810 (gene) Nannochloropsis oceanica

Overview
NameNO19G01810
Unique NameNO19G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr19:540497..542101 +

Link to JBrowse

Properties
Property NameValue
DescriptionDnaJ homolog subfamily C member 3 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:540497..542101 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_017493457.1 (PREDICTED: dnaJ homolog subfamily B member 6-like [Rhagoletis zephyria])

HSP 1 Score: 74.7 bits (182), Expect = 9.600e-10
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGHQFHF 113
            +Y+VLK+   A   ++KKAYRKLAL++HPDK  P  KEEA R F  I++AYE LSD N+RR+YD+    D         H GG+ FHF
Sbjct:    5 YYKVLKVQKSASQEEIKKAYRKLALKWHPDK-NPSNKEEAERQFKQISQAYEVLSDENKRRKYDVYGVDD------GSGHGGGNGFHF 85          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_022369839.1 (dnaJ homolog subfamily B member 6 isoform X2 [Enhydra lutris kenyoni])

HSP 1 Score: 74.7 bits (182), Expect = 9.600e-10
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQ--HRGGHQFHFEGGFDFGGT 122
            +YEVL +   A   D+KKAYRKLAL++HPDK  PE KEEA R F  +AEAYE LSDA +R  YD          R+ ++  + GG   HF+  FDFG T
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPDK-NPENKEEAERKFKQVAEAYEVLSDAKKRDIYD----------RYGKEGLNGGGGGIHFDNPFDFGFT 91          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_022369837.1 (dnaJ homolog subfamily B member 6 isoform X1 [Enhydra lutris kenyoni] >XP_022369838.1 dnaJ homolog subfamily B member 6 isoform X1 [Enhydra lutris kenyoni])

HSP 1 Score: 74.7 bits (182), Expect = 9.600e-10
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQ--HRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQ 149
            +YEVL +   A   D+KKAYRKLAL++HPDK  PE KEEA R F  +AEAYE LSDA +R  YD          R+ ++  + GG   HF+  FDFG T       + E+ G      + F DPF+
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPDK-NPENKEEAERKFKQVAEAYEVLSDAKKRDIYD----------RYGKEGLNGGGGGIHFDNPFDFGFTFRNPDDVFREFFGGRDPFSFDFFDPFE 118          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: PNI36026.1 (DNAJB6 isoform 10, partial [Pan troglodytes] >PNJ31261.1 DNAJB6 isoform 10, partial [Pongo abelii])

HSP 1 Score: 74.7 bits (182), Expect = 9.600e-10
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYD 89
            +YEVL +   A P D+KKAYRKLAL++HPDK  PE KEEA R F  +AEAYE LSDA +R  YD
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPDK-NPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_004368452.1 (dnaJ homolog subfamily B member 8 [Trichechus manatus latirostris])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   24 SFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLA 91
            +FYEVL +   A P D+KKAYRKLAL++HPDK  P+ KEEA + F  ++EAYE LSD+ +R  YD A
Sbjct:    3 NFYEVLGVKSSASPEDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRA 68          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_006017876.1 (PREDICTED: dnaJ homolog subfamily B member 8 [Alligator sinensis])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 0
Query:   24 SFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLFEQF 154
            ++Y+VL L  +A   D+KK+YRKLAL++HPDK  P+ KEEA + F A+AEAYE LSD  +R +YD +         +  + RGG           GG     GG YS +     G ++VF +P ++F +F
Sbjct:    3 NYYKVLGLQKNASQDDIKKSYRKLALKWHPDK-NPDNKEEAEKEFKAVAEAYEVLSDPQKRSKYDRS--------TYESRQRGG-----------GGAT---GGYYSPF-----GSDYVFRNPEEIFREF 104          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_006260196.1 (PREDICTED: dnaJ homolog subfamily B member 8 [Alligator mississippiensis] >KYO24836.1 dnaJ-like protein subfamily B member 8 [Alligator mississippiensis])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 0
Query:   24 SFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLFEQF 154
            ++Y+VL L  +A   D+KK+YRKLAL++HPDK  P+ KEEA + F A+AEAYE LSD  +R +YD +     Q        RGG           GG     GG YS +     G ++VF +P ++F +F
Sbjct:    3 NYYKVLGLQKNASQDDIKKSYRKLALKWHPDK-NPDNKEEAEKEFKAVAEAYEVLSDPQKRSKYDRSTNESRQ--------RGG-----------GGAT---GGYYSPF-----GSDYVFRNPEEIFREF 104          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_007951396.1 (PREDICTED: dnaJ homolog subfamily B member 8 [Orycteropus afer afer])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   24 SFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLA 91
            +FYEVL +   A P D+KKAYRKLAL++HPDK  P+ KEEA + F  ++EAYE LSD+ +R  YD A
Sbjct:    3 NFYEVLGVQSSASPEDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRA 68          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_012418900.1 (PREDICTED: dnaJ homolog subfamily B member 6 [Odobenus rosmarus divergens])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRF-REQHRGGHQFHFEGGFDFGGT 122
            +YEVL +   A   D+KKAYRKLAL++HPDK  PE KEEA R F  +AEAYE LSDA +R  YD          R+ +E   GG   HF+  +DFG T
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPDK-NPENKEEAERKFKQVAEAYEVLSDAKKRDMYD----------RYGKEGLNGGGGIHFDPRYDFGFT 90          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_016399411.1 (PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Sinocyclocheilus rhinocerous])

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-9
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   23 DSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYD 89
            D +Y VL +  +A P D+KKAYRKLAL++HPDK  P+ KEEA + F  ++EAYE LSDAN+R  YD
Sbjct:    3 DYYYHVLGVQRNASPDDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKELSEAYEVLSDANKRNLYD 67          
The following BLAST results are available for this feature:
BLAST of NO19G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_017493457.19.600e-1050.00PREDICTED: dnaJ homolog subfamily B member 6-like ... [more]
XP_022369839.19.600e-1049.49dnaJ homolog subfamily B member 6 isoform X2 [Enhy... [more]
XP_022369837.19.600e-1043.65dnaJ homolog subfamily B member 6 isoform X1 [Enhy... [more]
PNI36026.19.600e-1062.50DNAJB6 isoform 10, partial [Pan troglodytes] >PNJ3... [more]
XP_004368452.11.300e-956.72dnaJ homolog subfamily B member 8 [Trichechus mana... [more]
XP_006017876.11.300e-939.23PREDICTED: dnaJ homolog subfamily B member 8 [Alli... [more]
XP_006260196.11.300e-940.00PREDICTED: dnaJ homolog subfamily B member 8 [Alli... [more]
XP_007951396.11.300e-956.72PREDICTED: dnaJ homolog subfamily B member 8 [Oryc... [more]
XP_012418900.11.300e-950.00PREDICTED: dnaJ homolog subfamily B member 6 [Odob... [more]
XP_016399411.11.300e-957.58PREDICTED: dnaJ homolog subfamily B member 6-like ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004521NSK004521Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01810.1NO19G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641249gene_7581Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g30gene6775Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01810.1NO19G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01810 ID=NO19G01810|Name=NO19G01810|organism=Nannochloropsis oceanica|type=gene|length=1605bp
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGCGGGTGGCGGTGGAGGGGGTGGGTTGGAGGATCTGGT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAAAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGTGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGAAGGCG
GGGAGCACGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG
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protein sequence of NO19G01810.1

>NO19G01810.1-protein ID=NO19G01810.1-protein|Name=NO19G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MLHFLLFLPVAAAQRQQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQ
YHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRF
REQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLF
EQFFAGGGGGGGLEDLVADYYDEGEDEMGGKEERVVFEEEERYVLGGHEY
LRTQRVFNNGRIEVETTELPSRGVGGRGGRGGGGEGGGRREKLHQRPSPL
SPPGIRAGEIVSTVLYVLRMEETLEVGEHLLSSNGLYACYVDPREGRLVV
SRNMPGGERVWESEEEDDKDEDKGDPEKVLAKQQRRRGRQQLLQNSRLAA
TVSRQGRVELWALGGGPLSGGTLLLWRSTEEVGGPYLDDDLSDYEYVLSL
SGKDGNLVLRSIARLQQQHQEGEEGEAEKEEEEECIWASRGCPGERMDSQ
QVLQALGRRVLVPLLRQWRSGFKALVAFTKHCLPGLKKGAVRLQGLMKKA
GSTLKNVVANRWQQQQQQQQQYHRKKWKKQQGRK*
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Synonyms
Publications