NO19G01810.1, NO19G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01810.1
Unique NameNO19G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr19:540497..542101 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:540497..542101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01810.1 vs.
Match: EWM23666.1 (hypothetical protein Naga_100030g30 [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 1.200e-68
Identity = 210/552 (38.04%), Postives = 298/552 (53.99%), Query Frame = 0 
Query:    1 MLHFLLFLPVAAAQRQQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDG---------GEEWVFSDPFQLFEQFFAGGGGGG----GLEDLVADYYDEGEDEMGGKEERVVFEEEERYVLGGHEYLRTQRVFNNGRIEVETTELPSRGVG----GRGGRGGGGE------GGGRREKLHQRPSPLSPPGIRAGEIVSTVLYVLRMEETLEVGEHLLSSNGLYACYVDPREGRLVVSRNMPGGERVWESEEEDDKDE--DKGDPEKVLAKQQRRRGRQQLLQNSRLAATVSRQGRVELWALGG-GPLSGGTLLLWRSTEEVGGPYLDDDLSDYEYVLSLSGKDGNLVLRSIARLQQQHQEGEEGEAEKEEEEECIWASRGCPGERMDSQQVLQALGRRVLVPLLRQWRSG----FKALVAFTK-HCLPGLKKGAVRLQGLMKKAGSTLKNVVANRWQQQQQQQQQ 522
            M+H L+     AAQ   ++   +  YE L L P+A PADVKKAYR LAL+ HPDKV+ + KE AA +FA IAEAYE LSD  RR++YDLAR++ E+     +Q R  H  H + GF +    +     +S  G  D           E+W+F+DPFQLFE FFA     G    G +   A Y       +    E  V+E+ E +  GG +++R +RV+ +GRIE+ET E PS   G      GGR   GE      GG + +   +   P S         +      LR  E L+VG+ LLS  G + C++D +  +LVV+ N+  G+ +WES    +  E  ++GD  K          R   L  S L+A VSRQGRVE+W     G + G   L+W+ST++ GGP +D+DLS  EYVL+LS  DGNL L  +A+  +    G+EG      +EEC+WASRGCPG    ++Q L+  GR+V+ P+ R   +G     K L AF + H  P L++G + +  L KKA S L++ VA R + ++++Q Q
Sbjct:   34 MIHVLIAHLRTAAQTHPEYAHTN-LYEALGLNPNATPADVKKAYRTLALKNHPDKVQVDDKEAAASVFAEIAEAYEILSDPVRRQQYDLARRQVEEASNLGKQGRDHH--HSDRGFGYEDYWDEDVEAWSAQGRRDAYFAHQDHGRDEKWIFTDPFQLFESFFADTREWGDLRWGWDHEAAGYAGYPSGNVVSDWESDVYEDIEWHSFGGQDFIRIERVYGDGRIEMETKEAPSSSSGRARVDLGGRKKTGEWAHEERGGHKGDSFERFHRPFSSSW--GTSTMGVARQALRTGERLKVGDQLLSPEGTHVCFLDHKYEKLVVAENLEDGDILWESNGRGEGWETWEEGDSLK-------EGARPHSLHESHLSAVVSRQGRVEIWREERVGSIGGRKELVWQSTKDAGGPSVDEDLSSLEYVLTLSDVDGNLALYCVAK--EGRALGDEG-----GDEECVWASRGCPGMGRTARQALEEFGRQVVFPVFRLGVAGLTSLLKQLRAFVRDHGFPNLRRGWMYVYRLTKKAASKLRHAVAERRRVERKKQSQ 566
The following BLAST results are available for this feature:
BLAST of NO19G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23666.11.200e-6838.04hypothetical protein Naga_100030g30 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01810NO19G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01810.1NO19G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01810.1.cds1NO19G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01810.1 ID=NO19G01810.1|Name=NO19G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGCGGGTGGCGGTGGAGGGGGTGGGTTGGAGGATCTGGT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAAAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGTGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGAAGGCG
GGGAGCACGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG
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protein sequence of NO19G01810.1

>NO19G01810.1-protein ID=NO19G01810.1-protein|Name=NO19G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MLHFLLFLPVAAAQRQQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQ
YHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRF
REQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLF
EQFFAGGGGGGGLEDLVADYYDEGEDEMGGKEERVVFEEEERYVLGGHEY
LRTQRVFNNGRIEVETTELPSRGVGGRGGRGGGGEGGGRREKLHQRPSPL
SPPGIRAGEIVSTVLYVLRMEETLEVGEHLLSSNGLYACYVDPREGRLVV
SRNMPGGERVWESEEEDDKDEDKGDPEKVLAKQQRRRGRQQLLQNSRLAA
TVSRQGRVELWALGGGPLSGGTLLLWRSTEEVGGPYLDDDLSDYEYVLSL
SGKDGNLVLRSIARLQQQHQEGEEGEAEKEEEEECIWASRGCPGERMDSQ
QVLQALGRRVLVPLLRQWRSGFKALVAFTKHCLPGLKKGAVRLQGLMKKA
GSTLKNVVANRWQQQQQQQQQYHRKKWKKQQGRK*
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mRNA from alignment at chr19:540497..542101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01810.1 ID=NO19G01810.1|Name=NO19G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr19:540497..542101+ (Nannochloropsis oceanica)
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGCGGGTGGCGGTGGAGGGGGTGGGTTGGAGGATCTGGT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAAAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGTGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGAAGGCG
GGGAGCACGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG
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Coding sequence (CDS) from alignment at chr19:540497..542101+

>NO19G01810.1 ID=NO19G01810.1|Name=NO19G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr19:540497..542101+ (Nannochloropsis oceanica)
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGCGGGTGGCGGTGGAGGGGGTGGGTTGGAGGATCTGGT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAAAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGTGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGAAGGCG
GGGAGCACGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG
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Synonyms
Publications