NO19G01810, NO19G01810 (gene) Nannochloropsis oceanica

Overview
NameNO19G01810
Unique NameNO19G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr19:540497..542101 +

Link to JBrowse

Properties
Property NameValue
DescriptionDnaJ homolog subfamily C member 3 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:540497..542101 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO19G01810 vs. NCBI_GenBank
Match: EWM23666.1 (hypothetical protein Naga_100030g30 [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 9.200e-61
Identity = 181/540 (33.52%), Postives = 253/540 (46.85%), Query Frame = 0
Query:    1 MLHFLLFLPVAAAQRQQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDG---------GEEWVFSDPFQLFEQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----LGGHEYLRTQRVFNNGRIEVETTELPSR----------GVXXXXXXXXXXXXXXXREKLHQRPSPLSPPGIRAGEIVSTVLYVLRMEETLEVGEHLLSSNGLYACYVDPREGRLVVSRNMPGGERVWESEXXXXXXXXXXXXXXXXXXXXXXXXXQQLLQNSRLAATVSRQGRVELWALGG-GPLSGGTLLLWRSTEEVGGPYLDDDLSDYEYVLSLSGKDGNLVLRSIARLQQXXXXXXXXXXXXXXXXXCIWASRGCPGERMDSQQVLQALGRRVLVPLLRQWRSG----FKALVAFTK-HCLPGLKKGAVRLQGLMKKAGSTLKNVVANR 512
            M+H L+     AAQ   ++    + YE L L P+A PADVKKAYR LAL+ HPDKV+ + KE AA +FA IAEAYE LSD  RR++YDLAR++ E+     +Q R  H  H + GF +    +     +S  G  D           E+W+F+DPFQLFE F                                        +     GG +++R +RV+ +GRIE+ET E PS           G                 +   +   P S         +      LR  E L+VG+ LLS  G + C++D +  +LVV+ N+  G+ +WES                             L  S L+A VSRQGRVE+W     G + G   L+W+ST++ GGP +D+DLS  EYVL+LS  DGNL L  +A+                    C+WASRGCPG    ++Q L+  GR+V+ P+ R   +G     K L AF + H  P L++G + +  L KKA S L++ VA R
Sbjct:   34 MIHVLIAHLRTAAQTHPEY-AHTNLYEALGLNPNATPADVKKAYRTLALKNHPDKVQVDDKEAAASVFAEIAEAYEILSDPVRRQQYDLARRQVEEASNLGKQGRDHH--HSDRGFGYEDYWDEDVEAWSAQGRRDAYFAHQDHGRDEKWIFTDPFQLFESFFADTREWGDLRWGWDHEAAGYAGYPSGNVVSDWESDVYEDIEWHSFGGQDFIRIERVYGDGRIEMETKEAPSSSSGRARVDLGGRKKTGEWAHEERGGHKGDSFERFHRPFSSSW--GTSTMGVARQALRTGERLKVGDQLLSPEGTHVCFLDHKYEKLVVAENLEDGDILWESN-----GRGEGWETWEEGDSLKEGARPHSLHESHLSAVVSRQGRVEIWREERVGSIGGRKELVWQSTKDAGGPSVDEDLSSLEYVLTLSDVDGNLALYCVAK-------EGRALGDEGGDEECVWASRGCPGMGRTARQALEEFGRQVVFPVFRLGVAGLTSLLKQLRAFVRDHGFPNLRRGWMYVYRLTKKAASKLRHAVAER 556          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_022522403.1 (dnaJ homolog subfamily B member 6 [Astyanax mexicanus])

HSP 1 Score: 79.0 bits (193), Expect = 5.100e-11
Identity = 55/110 (50.00%), Postives = 65/110 (59.09%), Query Frame = 0
Query:   23 DSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGHQFHFEGGFDFGGTE----EMGGGR 129
            D +Y VL +  +A P D+KKAYRKLAL++HPDK  PE KEEA R F  I+EAYE LSD N+R  YD    R  +E       RG +  HF GGF F   E    E  GGR
Sbjct:    3 DEYYSVLGVARNASPDDIKKAYRKLALKWHPDK-NPENKEEAERRFKVISEAYEVLSDENKRSAYD----RYGKEGLTGGGARGHYDDHFGGGFTFRNPEDVFREFFGGR 107          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: NP_956599.1 (dnaJ homolog subfamily B member 6 [Danio rerio] >AAH49536.1 DnaJ (Hsp40) homolog, subfamily B, member 6 [Danio rerio])

HSP 1 Score: 78.6 bits (192), Expect = 6.700e-11
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   23 DSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQ---HRGGH-QFHFEGGFDFGGTEEM 125
            + +Y +L +T  A P D+KKAYRKLAL++HPDK  P  KEEA + F  I+EAYE LSD N+RR+YD          R+ +Q   +RGGH    + GGF F   E++
Sbjct:    3 EDYYHILGVTKSASPDDIKKAYRKLALKWHPDK-NPNDKEEAEKRFKEISEAYEVLSDENKRRDYD----------RYGKQGLSNRGGHYDDEYMGGFTFRNPEDV 97          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_009301640.1 (dnaJ homolog subfamily B member 6 isoform X1 [Danio rerio] >XP_009301641.1 dnaJ homolog subfamily B member 6 isoform X1 [Danio rerio])

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-10
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 0
Query:   23 DSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQ---HRGGH-QFHFEGGFDFGGTEEMGGGRYSE-WGGWDGGEEWVFSDPFQLF 151
            + +Y +L +T  A P D+KKAYRKLAL++HPDK  P  KEEA + F  I+EAYE LSD N+RR+YD          R+ +Q   +RGGH    + GGF F   E++    + E +GG D   ++   D F+ F
Sbjct:    3 EDYYHILGVTKSASPDDIKKAYRKLALKWHPDK-NPNDKEEAEKRFKEISEAYEVLSDENKRRDYD----------RYGKQGLSNRGGHYDDEYMGGFTFRNPEDV----FREFFGGHDPFADFFADDTFEGF 120          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_021333110.1 (dnaJ homolog subfamily B member 6 isoform X2 [Danio rerio])

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-10
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 0
Query:   23 DSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQ---HRGGH-QFHFEGGFDFGGTEEMGGGRYSE-WGGWDGGEEWVFSDPFQLF 151
            + +Y +L +T  A P D+KKAYRKLAL++HPDK  P  KEEA + F  I+EAYE LSD N+RR+YD          R+ +Q   +RGGH    + GGF F   E++    + E +GG D   ++   D F+ F
Sbjct:    3 EDYYHILGVTKSASPDDIKKAYRKLALKWHPDK-NPNDKEEAEKRFKEISEAYEVLSDENKRRDYD----------RYGKQGLSNRGGHYDDEYMGGFTFRNPEDV----FREFFGGHDPFADFFADDTFEGF 120          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_021882150.1 (hypothetical protein BCR41DRAFT_421590 [Lobosporangium transversale] >ORZ18355.1 hypothetical protein BCR41DRAFT_421590 [Lobosporangium transversale])

HSP 1 Score: 75.9 bits (185), Expect = 4.300e-10
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0
Query:   16 QQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYD 89
            +     + ++YE+L L P A   DVKKAYRK AL +HPDK+KP  KEEA++ F  I+EAYE LSD  +R  YD
Sbjct:    2 ESDDSNKPNYYELLCLDPSATKEDVKKAYRKQALLFHPDKMKPHMKEEASQHFQLISEAYEVLSDDKKRELYD 74          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: KTG06590.1 (hypothetical protein cypCar_00010352 [Cyprinus carpio])

HSP 1 Score: 75.5 bits (184), Expect = 5.700e-10
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRFREQHRGGH-QFHFEGGFDFGGTE----EMGGGR 129
            +YEVL +T +A   D+KKAYRK AL++HPDK  P  KE+A ++F  I+EAYE LSD N+RR YD   + D         HRGGH    F GGF F   +    E  GGR
Sbjct:    4 YYEVLGVTRNASHDDIKKAYRKKALKWHPDK-NPNNKEQADKMFKEISEAYEVLSDENKRRRYDTYGKED-------LSHRGGHYDEDFMGGFTFRNPDDVFREFFGGR 104          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: GAV07164.1 (hypothetical protein RvY_17039 [Ramazzottius varieornatus])

HSP 1 Score: 75.1 bits (183), Expect = 7.400e-10
Identity = 52/134 (38.81%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   25 FYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDL-----ARQRDEQEVRFREQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLFEQF 154
            FY VL++T  A  A++KKAYR+LAL++HPDK  PEQK+ A   F  I++AYE LSD  +R  YD       +   +       +H     FH  GGF+    E              GG  +VF DPF LF +F
Sbjct:    4 FYAVLEITKAATDAEIKKAYRRLALRWHPDK-NPEQKDHAEGKFKLISQAYEVLSDVKKRSIYDKYGHEGLKSAQQNGGAAGPRHASSRHFHAAGGFNDPFAEMF------------GGRGFVFRDPFDLFREF 124          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: PIU41046.1 (molecular chaperone DnaJ [Candidatus Omnitrophica bacterium CG07_land_8_20_14_0_80_42_15])

HSP 1 Score: 75.1 bits (183), Expect = 7.400e-10
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   22 RDSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYD 89
            R  +YEVLK+  +A P ++KKAYR LAL++HPD+V P++K EA   F  I+EAYE LSD  +R  YD
Sbjct:    3 RHDYYEVLKVGKNASPDEIKKAYRNLALKHHPDRVSPDKKNEAEERFKEISEAYEVLSDPQKRSTYD 69          
BLAST of NO19G01810 vs. NCBI_GenBank
Match: XP_016309960.1 (PREDICTED: dnaJ homolog subfamily B member 6-like, partial [Sinocyclocheilus anshuiensis])

HSP 1 Score: 74.7 bits (182), Expect = 9.600e-10
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   23 DSFYEVLKLTPDALPADVKKAYRKLALQYHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYD 89
            D +Y VL +  +A P D+KKAYRKLAL++HPDK  P+ KEEA + F  ++EAYE LSDAN+R  YD
Sbjct:    3 DYYYHVLGVQRNASPDDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKELSEAYEVLSDANKRNVYD 67          
The following BLAST results are available for this feature:
BLAST of NO19G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23666.19.200e-6133.52hypothetical protein Naga_100030g30 [Nannochlorops... [more]
XP_022522403.15.100e-1150.00dnaJ homolog subfamily B member 6 [Astyanax mexica... [more]
NP_956599.16.700e-1146.23dnaJ homolog subfamily B member 6 [Danio rerio] >A... [more]
XP_009301640.11.100e-1042.11dnaJ homolog subfamily B member 6 isoform X1 [Dani... [more]
XP_021333110.11.100e-1042.11dnaJ homolog subfamily B member 6 isoform X2 [Dani... [more]
XP_021882150.14.300e-1052.05hypothetical protein BCR41DRAFT_421590 [Lobosporan... [more]
KTG06590.15.700e-1047.71hypothetical protein cypCar_00010352 [Cyprinus car... [more]
GAV07164.17.400e-1038.81hypothetical protein RvY_17039 [Ramazzottius varie... [more]
PIU41046.17.400e-1053.73molecular chaperone DnaJ [Candidatus Omnitrophica ... [more]
XP_016309960.19.600e-1057.58PREDICTED: dnaJ homolog subfamily B member 6-like,... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004521NSK004521Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01810.1NO19G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641249gene_7581Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g30gene6775Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01810.1NO19G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01810 ID=NO19G01810|Name=NO19G01810|organism=Nannochloropsis oceanica|type=gene|length=1605bp
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGCGGGTGGCGGTGGAGGGGGTGGGTTGGAGGATCTGGT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAAAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGTGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGAAGGCG
GGGAGCACGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG
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protein sequence of NO19G01810.1

>NO19G01810.1-protein ID=NO19G01810.1-protein|Name=NO19G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MLHFLLFLPVAAAQRQQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQ
YHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRF
REQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLF
EQFFAGGGGGGGLEDLVADYYDEGEDEMGGKEERVVFEEEERYVLGGHEY
LRTQRVFNNGRIEVETTELPSRGVGGRGGRGGGGEGGGRREKLHQRPSPL
SPPGIRAGEIVSTVLYVLRMEETLEVGEHLLSSNGLYACYVDPREGRLVV
SRNMPGGERVWESEEEDDKDEDKGDPEKVLAKQQRRRGRQQLLQNSRLAA
TVSRQGRVELWALGGGPLSGGTLLLWRSTEEVGGPYLDDDLSDYEYVLSL
SGKDGNLVLRSIARLQQQHQEGEEGEAEKEEEEECIWASRGCPGERMDSQ
QVLQALGRRVLVPLLRQWRSGFKALVAFTKHCLPGLKKGAVRLQGLMKKA
GSTLKNVVANRWQQQQQQQQQYHRKKWKKQQGRK*
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Synonyms
Publications