NO19G01740, NO19G01740 (gene) Nannochloropsis oceanica

Overview
NameNO19G01740
Unique NameNO19G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2275
Alignment locationchr19:523702..525976 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:523702..525976 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G01740 vs. NCBI_GenBank
Match: EWM23675.1 (hypothetical protein Naga_100030g37 [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 2.000e-75
Identity = 243/454 (53.52%), Postives = 279/454 (61.45%), Query Frame = 0 
Query:    1 MGRATAAAAVVTLVACL-GSSTITSASAFVVMPFSPRLIMPPSSLSMRPAASERSACISRPANKIVGALQAGAGSDNDNNGGNKDDLYYQRFMGMNEGEPTDDLRVAAEIADMDPSTIDSLRRSISVDGKVNMSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNLQKGSPDLMMSGPKVYIIPQNQGEAPLEIKSLAPGQRRSQKGVIAEIPGRSFPKRPRRVDLSEKMAEAKRAIQEAPTRLTELQVQNIRNGAAMNPNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGYSSGREQQGSRS---------RMMNSRRASPASEFKFPPLPAWSKDWRVWVGGIAAVSFFTALVNSLSYRSELMVMHESERWEGGRD 445
            MGRA A+A V+T++ CL G+S   SA AFV+ PF+       S    R        C  +PA  +   +QA +GS  ++  GNKDDLYYQRFMGMNEGEPTDD+RVAAEIADMDPS IDSLRR   +D KV +S               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXX  +  +G+PD+M +GPKVYIIPQNQ EAPLEI+S+APGQRR+QKGVIAEIPGRSFPKRPRRVDLSEKMAE KR+IQEAPTRLTE+QVQN+RNGAA+NPN                                                               G S G +++GS S            N  R SPAS+ +   LPAWS+DWRVWVGGIAAVSFF ALVNSLSYRSEL+VM +     G RD
Sbjct:    1 MGRAEASAVVLTIMTCLSGTSASISAPAFVMQPFTCH--SRESLQLFRVRTRGAVPCFPQPAKSV---MQAASGSGENSGSGNKDDLYYQRFMGMNEGEPTDDVRVAAEIADMDPSIIDSLRRGTPMDDKVKVS---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMKKKAPSFSTRGXXXXXXXXXXXSGSPLRGTPDMMSTGPKVYIIPQNQEEAPLEIRSVAPGQRRNQKGVIAEIPGRSFPKRPRRVDLSEKMAEVKRSIQEAPTRLTEVQVQNLRNGAAINPNNPAGSGNPGVGAQGSPNQQGGNNMKNAGANSGQSQFSFPSFPVQPMPQQKSQQPFSSLAGAGTGRSRGSKRRGSLSGEFDAQGGMGRRNRNRGSPASQLQ---LPAWSRDWRVWVGGIAAVSFFMALVNSLSYRSELVVM-DGSGLRGNRD 430
The following BLAST results are available for this feature:
BLAST of NO19G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23675.12.000e-7553.52hypothetical protein Naga_100030g37 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01740.1NO19G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599232gene_7575Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g37gene6781Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01740.1NO19G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01740 ID=NO19G01740|Name=NO19G01740|organism=Nannochloropsis oceanica|type=gene|length=2275bp
ACAGGAAGCTCGTCCTAGGCTTTGTAGAGAAGCCGACTGCGTGCGTCGGC
TATCCTGCAAAAGTGCCTCCACACGAGCACAACCCACATCACAAATTATG
GGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTTGGG
CAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTTCCC
CGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCATCC
GAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGCCCT
GCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGGACG
ACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACGGAC
GACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGATCGA
TTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGCCAT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGTGGG
AATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGGTGC
CGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTTCGA
CTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGAGGA
GGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTCAGG
GCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGGAGA
TAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATTGCG
GAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTTGTC
GGAGAAGgtacgtttcggctgcgtgtatgaaactttggaacggggaaaat
cgaaagaaagggatgtccacctgagtgagcgtaaggtcgagaggtcgaat
tttacgaaaaagggagataaagttgtgaagttacgagtatgcatgcattt
ctgcacccgttcataagtgtaagcgattgaaactatgtgtctttacctct
tctcgttccccccttttcctttcttttcctttccaccccaaacagATGGC
CGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCCGCCTCACGGAACTGC
AAGTCCAGAATATCCGAAATGGCGCTGCCATGAACCCCAATTTTAACAAC
CCTAACGGCCAAAACAACAACAATCAAAACAACAATAACAACGTCAACAA
TAACAGCAATGGGCAGCAGCAGCAGCAACAGAACCAGTTTACCTTTCCGA
GCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCCAAATCCTCCCCTCCG
TCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTACTCTTCAGGGAGGGA
ACAACAAGGATCAAGGAGTCGCATGATGAATAGTAGGAGAGCTTCTCCGG
CGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGGAGTAAAGATTGGAGA
GTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTTCACGGCTTTGGTGAA
TTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGCATGAAAGTGAACGAT
GGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGGAAATTGGGGCAGCAG
CAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGTGGCCTGAATATGAGT
GAGAAAATTTGGAGAAGACGACGGGGGGCTACTATCGAATGAAAATGACG
GGAAAAAGAAAGGGAAGGGGATGGCTGTGTAGGTAGTAGCAGAATGAAGA
AGAAGGGAACGCGAAAGGGAAGCAGCGGCAGCAGGTGCAGCAGTGGTGGA
AACGCATCAGCATAGTGGTTTCCTGAAAGTAGAGAGAGTTGTAGAAGAAG
CAGACGCGCATTGTATACTTTGACAGCAGAAGATTTGAGAACGAGGTGAA
TAAAGAGGACCACGAAAGCTTACAGAAGGAACAGAAATGAAAAAAACAAG
GTGAACATGAATCATACAACAGGTGAAAGTATGTGGTCGGATCCAACAAA
CGCGCAGACTCTTTCATTCACCGGCACACCTTGCAGCTCTTTCCATGGAT
GGAACAGTCAATCAATCTAATCCCCATTATACGCGCATGGTTACTTGTGA
CTTGACTCTTGGCAGCAGTAGAAGAAGGAAGAAAGAGAAGATAGATGAAG
ACGAAGTTGTGCGAAGTACTGTCCT
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protein sequence of NO19G01740.1

>NO19G01740.1-protein ID=NO19G01740.1-protein|Name=NO19G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MGRATAAAAVVTLVACLGSSTITSASAFVVMPFSPRLIMPPSSLSMRPAA
SERSACISRPANKIVGALQAGAGSDNDNNGGNKDDLYYQRFMGMNEGEPT
DDLRVAAEIADMDPSTIDSLRRSISVDGKVNMSPSSSSSSSSSSNPFYIG
GNSGGSSGSISSGIGSGAGGFLDSMKKKSAASFSTLGGGAGGGGGGMGGG
GGMNSNLQKGSPDLMMSGPKVYIIPQNQGEAPLEIKSLAPGQRRSQKGVI
AEIPGRSFPKRPRRVDLSEKMAEAKRAIQEAPTRLTELQVQNIRNGAAMN
PNFNNPNGQNNNNQNNNNNVNNNSNGQQQQQQNQFTFPSFPSQQPVQQQP
KSSPPSSGRSRSKRRGYSSGREQQGSRSRMMNSRRASPASEFKFPPLPAW
SKDWRVWVGGIAAVSFFTALVNSLSYRSELMVMHESERWEGGRDAFMLER
KLGQQQPCVGDAVERMVA*
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Synonyms
Publications