NO19G01740.1, NO19G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01740.1
Unique NameNO19G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2037
Alignment locationchr19:523702..525976 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:523702..525976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01740.1 vs.
Match: EWM23675.1 (hypothetical protein Naga_100030g37 [Nannochloropsis gaditana])

HSP 1 Score: 364.8 bits (935), Expect = 4.100e-97
Identity = 266/459 (57.95%), Postives = 313/459 (68.19%), Query Frame = 0 
Query:    1 MGRATAAAAVVTLVACL-GSSTITSASAFVVMPFSPRLIMPPSSLSMRPAASERSACISRPANKIVGALQAGAGSDNDNNGGNKDDLYYQRFMGMNEGEPTDDLRVAAEIADMDPSTIDSLRRSISVDGKVNMSPSSSSSSSSSSNPFYIGGN-SGGSSGSISSGIGSGAGGFLDSMKKKSAASFSTLGGGAGGGGGGMGGGGGMNSNLQKGSPDLMMSGPKVYIIPQNQGEAPLEIKSLAPGQRRSQKGVIAEIPGRSFPKRPRRVDLSEKMAEAKRAIQEAPTRLTELQVQNIRNGAAMNPNFNNPNGQNN-----NNQNNNNNVNNNSNGQQQQQQNQFTFPSFPSQQPVQQQPKSSPPSS------GRSR-SKRRGYSSGR-EQQGSRSRMMNSRRASPASEFKFPPLPAWSKDWRVWVGGIAAVSFFTALVNSLSYRSELMVMHESERWEGGRD 445
            MGRA A+A V+T++ CL G+S   SA AFV+ PF+       S    R        C  +PA  +   +QA +GS  ++  GNKDDLYYQRFMGMNEGEPTDD+RVAAEIADMDPS IDSLRR   +D KV +S SS S ++S    F++G + SGG S S+      G+GGFL+SMKKK A SFST G G+ GG GG     GM+ +  +G+PD+M +GPKVYIIPQNQ EAPLEI+S+APGQRR+QKGVIAEIPGRSFPKRPRRVDLSEKMAE KR+IQEAPTRLTE+QVQN+RNGAA+NPN  NP G  N         N    NN  N      Q+QF+FPSFP Q P+ QQ    P SS      GRSR SKRRG  SG  + QG   R  N  R SPAS+ +   LPAWS+DWRVWVGGIAAVSFF ALVNSLSYRSEL+VM +     G RD
Sbjct:    1 MGRAEASAVVLTIMTCLSGTSASISAPAFVMQPFTCH--SRESLQLFRVRTRGAVPCFPQPAKSV---MQAASGSGENSGSGNKDDLYYQRFMGMNEGEPTDDVRVAAEIADMDPSIIDSLRRGTPMDDKVKVSSSSGSPTAS----FFLGASGSGGGSSSV------GSGGFLESMKKK-APSFSTRGAGSAGGAGG-----GMSGSPLRGTPDMMSTGPKVYIIPQNQEEAPLEIRSVAPGQRRNQKGVIAEIPGRSFPKRPRRVDLSEKMAEVKRSIQEAPTRLTEVQVQNLRNGAAINPN--NPAGSGNPGVGAQGSPNQQGGNNMKNAGANSGQSQFSFPSFPVQ-PMPQQKSQQPFSSLAGAGTGRSRGSKRRGSLSGEFDAQGGMGRR-NRNRGSPASQLQ---LPAWSRDWRVWVGGIAAVSFFMALVNSLSYRSELVVM-DGSGLRGNRD 430
The following BLAST results are available for this feature:
BLAST of NO19G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23675.14.100e-9757.95hypothetical protein Naga_100030g37 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01740NO19G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01740.1NO19G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01740.1.cds1NO19G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01740.1.cds2NO19G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01740.1 ID=NO19G01740.1|Name=NO19G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp
ACAGGAAGCTCGTCCTAGGCTTTGTAGAGAAGCCGACTGCGTGCGTCGGC
TATCCTGCAAAAGTGCCTCCACACGAGCACAACCCACATCACAAATTATG
GGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTTGGG
CAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTTCCC
CGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCATCC
GAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGCCCT
GCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGGACG
ACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACGGAC
GACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGATCGA
TTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGCCAT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGTGGG
AATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGGTGC
CGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTTCGA
CTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGAGGA
GGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTCAGG
GCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGGAGA
TAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATTGCG
GAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTTGTC
GGAGAAGATGGCCGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCCGCC
TCACGGAACTGCAAGTCCAGAATATCCGAAATGGCGCTGCCATGAACCCC
AATTTTAACAACCCTAACGGCCAAAACAACAACAATCAAAACAACAATAA
CAACGTCAACAATAACAGCAATGGGCAGCAGCAGCAGCAACAGAACCAGT
TTACCTTTCCGAGCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCCAAA
TCCTCCCCTCCGTCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTACTC
TTCAGGGAGGGAACAACAAGGATCAAGGAGTCGCATGATGAATAGTAGGA
GAGCTTCTCCGGCGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGGAGT
AAAGATTGGAGAGTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTTCAC
GGCTTTGGTGAATTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGCATG
AAAGTGAACGATGGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGGAAA
TTGGGGCAGCAGCAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGTGGC
CTGAATATGAGTGAGAAAATTTGGAGAAGACGACGGGGGGCTACTATCGA
ATGAAAATGACGGGAAAAAGAAAGGGAAGGGGATGGCTGTGTAGGTAGTA
GCAGAATGAAGAAGAAGGGAACGCGAAAGGGAAGCAGCGGCAGCAGGTGC
AGCAGTGGTGGAAACGCATCAGCATAGTGGTTTCCTGAAAGTAGAGAGAG
TTGTAGAAGAAGCAGACGCGCATTGTATACTTTGACAGCAGAAGATTTGA
GAACGAGGTGAATAAAGAGGACCACGAAAGCTTACAGAAGGAACAGAAAT
GAAAAAAACAAGGTGAACATGAATCATACAACAGGTGAAAGTATGTGGTC
GGATCCAACAAACGCGCAGACTCTTTCATTCACCGGCACACCTTGCAGCT
CTTTCCATGGATGGAACAGTCAATCAATCTAATCCCCATTATACGCGCAT
GGTTACTTGTGACTTGACTCTTGGCAGCAGTAGAAGAAGGAAGAAAGAGA
AGATAGATGAAGACGAAGTTGTGCGAAGTACTGTCCT
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protein sequence of NO19G01740.1

>NO19G01740.1-protein ID=NO19G01740.1-protein|Name=NO19G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MGRATAAAAVVTLVACLGSSTITSASAFVVMPFSPRLIMPPSSLSMRPAA
SERSACISRPANKIVGALQAGAGSDNDNNGGNKDDLYYQRFMGMNEGEPT
DDLRVAAEIADMDPSTIDSLRRSISVDGKVNMSPSSSSSSSSSSNPFYIG
GNSGGSSGSISSGIGSGAGGFLDSMKKKSAASFSTLGGGAGGGGGGMGGG
GGMNSNLQKGSPDLMMSGPKVYIIPQNQGEAPLEIKSLAPGQRRSQKGVI
AEIPGRSFPKRPRRVDLSEKMAEAKRAIQEAPTRLTELQVQNIRNGAAMN
PNFNNPNGQNNNNQNNNNNVNNNSNGQQQQQQNQFTFPSFPSQQPVQQQP
KSSPPSSGRSRSKRRGYSSGREQQGSRSRMMNSRRASPASEFKFPPLPAW
SKDWRVWVGGIAAVSFFTALVNSLSYRSELMVMHESERWEGGRDAFMLER
KLGQQQPCVGDAVERMVA*
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mRNA from alignment at chr19:523702..525976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01740.1 ID=NO19G01740.1|Name=NO19G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at chr19:523702..525976+ (Nannochloropsis oceanica)
ACAGGAAGCTCGTCCTAGGCTTTGTAGAGAAGCCGACTGCGTGCGTCGGC
TATCCTGCAAAAGTGCCTCCACACGAGCACAACCCACATCACAAATTATG
GGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTTGGG
CAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTTCCC
CGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCATCC
GAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGCCCT
GCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGGACG
ACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACGGAC
GACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGATCGA
TTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGCCAT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGTGGG
AATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGGTGC
CGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTTCGA
CTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGAGGA
GGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTCAGG
GCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGGAGA
TAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATTGCG
GAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTTGTC
GGAGAAGGTACGTTTCGGCTGCGTGTATGAAACTTTGGAACGGGGAAAAT
CGAAAGAAAGGGATGTCCACCTGAGTGAGCGTAAGGTCGAGAGGTCGAAT
TTTACGAAAAAGGGAGATAAAGTTGTGAAGTTACGAGTATGCATGCATTT
CTGCACCCGTTCATAAGTGTAAGCGATTGAAACTATGTGTCTTTACCTCT
TCTCGTTCCCCCCTTTTCCTTTCTTTTCCTTTCCACCCCAAACAGATGGC
CGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCCGCCTCACGGAACTGC
AAGTCCAGAATATCCGAAATGGCGCTGCCATGAACCCCAATTTTAACAAC
CCTAACGGCCAAAACAACAACAATCAAAACAACAATAACAACGTCAACAA
TAACAGCAATGGGCAGCAGCAGCAGCAACAGAACCAGTTTACCTTTCCGA
GCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCCAAATCCTCCCCTCCG
TCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTACTCTTCAGGGAGGGA
ACAACAAGGATCAAGGAGTCGCATGATGAATAGTAGGAGAGCTTCTCCGG
CGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGGAGTAAAGATTGGAGA
GTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTTCACGGCTTTGGTGAA
TTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGCATGAAAGTGAACGAT
GGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGGAAATTGGGGCAGCAG
CAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGTGGCCTGAATATGAGT
GAGAAAATTTGGAGAAGACGACGGGGGGCTACTATCGAATGAAAATGACG
GGAAAAAGAAAGGGAAGGGGATGGCTGTGTAGGTAGTAGCAGAATGAAGA
AGAAGGGAACGCGAAAGGGAAGCAGCGGCAGCAGGTGCAGCAGTGGTGGA
AACGCATCAGCATAGTGGTTTCCTGAAAGTAGAGAGAGTTGTAGAAGAAG
CAGACGCGCATTGTATACTTTGACAGCAGAAGATTTGAGAACGAGGTGAA
TAAAGAGGACCACGAAAGCTTACAGAAGGAACAGAAATGAAAAAAACAAG
GTGAACATGAATCATACAACAGGTGAAAGTATGTGGTCGGATCCAACAAA
CGCGCAGACTCTTTCATTCACCGGCACACCTTGCAGCTCTTTCCATGGAT
GGAACAGTCAATCAATCTAATCCCCATTATACGCGCATGGTTACTTGTGA
CTTGACTCTTGGCAGCAGTAGAAGAAGGAAGAAAGAGAAGATAGATGAAG
ACGAAGTTGTGCGAAGTACTGTCCT
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Coding sequence (CDS) from alignment at chr19:523702..525976+

>NO19G01740.1 ID=NO19G01740.1|Name=NO19G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr19:523702..525976+ (Nannochloropsis oceanica)
ATGGGGCGGGCAACAGCAGCAGCCGCTGTCGTGACCTTGGTGGCGTGCTT
GGGCAGCAGCACCATAACCAGCGCCAGTGCATTTGTCGTCATGCCCTTTT
CCCCGCGTTTGATAATGCCGCCGTCGTCGTTGTCAATGCGACCTGCTGCA
TCCGAGAGATCAGCCTGTATCTCGCGACCCGCCAACAAGATTGTAGGGGC
CCTGCAGGCCGGCGCTGGCAGCGACAATGACAACAATGGCGGGAACAAGG
ACGACTTGTACTACCAGCGCTTTATGGGAATGAACGAGGGAGAGCCTACG
GACGACTTACGTGTGGCAGCCGAGATTGCAGACATGGACCCGAGCACGAT
CGATTCGCTGCGACGTAGCATCTCAGTGGATGGTAAGGTGAACATGTCGC
CATCCTCCTCCTCCTCCTCCTCCTCCTCCTCTAATCCGTTCTATATCGGT
GGGAATAGTGGTGGCAGTAGCGGAAGTATTAGCAGTGGGATTGGAAGCGG
TGCCGGTGGATTCTTGGACTCTATGAAGAAGAAATCAGCAGCCAGCTTTT
CGACTTTGGGTGGCGGGGCTGGAGGAGGAGGAGGAGGAATGGGAGGAGGA
GGAGGAATGAATTCGAATTTGCAAAAAGGCAGTCCAGATTTGATGATGTC
AGGGCCGAAGGTTTATATCATTCCCCAGAATCAGGGGGAGGCCCCATTGG
AGATAAAGAGTTTGGCGCCCGGACAGAGAAGATCACAGAAAGGTGTGATT
GCGGAGATTCCCGGGAGGAGTTTTCCGAAGCGTCCTCGACGGGTGGATTT
GTCGGAGAAGATGGCCGAGGCTAAGCGCGCCATCCAAGAAGCCCCCACCC
GCCTCACGGAACTGCAAGTCCAGAATATCCGAAATGGCGCTGCCATGAAC
CCCAATTTTAACAACCCTAACGGCCAAAACAACAACAATCAAAACAACAA
TAACAACGTCAACAATAACAGCAATGGGCAGCAGCAGCAGCAACAGAACC
AGTTTACCTTTCCGAGCTTCCCATCTCAGCAGCCGGTACAGCAGCAACCC
AAATCCTCCCCTCCGTCCTCGGGGCGCAGCCGATCAAAGCGACGTGGCTA
CTCTTCAGGGAGGGAACAACAAGGATCAAGGAGTCGCATGATGAATAGTA
GGAGAGCTTCTCCGGCGTCTGAATTTAAGTTTCCGCCGCTGCCGGCGTGG
AGTAAAGATTGGAGAGTGTGGGTAGGTGGCATTGCCGCTGTGTCGTTTTT
CACGGCTTTGGTGAATTCCTTGAGTTACAGGAGTGAGTTGATGGTTATGC
ATGAAAGTGAACGATGGGAAGGTGGGAGGGATGCGTTTATGTTGGAGAGG
AAATTGGGGCAGCAGCAGCCATGTGTAGGGGACGCGGTAGAGCGGATGGT
GGCCTGA
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Synonyms
Publications