NO19G01620, NO19G01620 (gene) Nannochloropsis oceanica

Overview
NameNO19G01620
Unique NameNO19G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr19:486404..487884 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:486404..487884 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
Homology
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BLAST of NO19G01620 vs. NCBI_GenBank
Match: EWM23696.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 221.9 bits (564), Expect = 4.300e-54
Identity = 177/478 (37.03%), Postives = 243/478 (50.84%), Query Frame = 0 
Query:    1 MLVLANKTEAQRILHILDDTLEGLTLLGGLPLGLPSDKQTLQASPQILTLFQKHHQLEIEVLKSLSSSSXXXXXXXXXXXXXXXLPSLSSGTDVPIRKNTRSAP-LSSPLSSLSFSREDKIHHLYRSITGNLVRALRRRDYINDHP---TSISPSTAAFLEVLYELKSLLAQRFSTTLQEDLRQANTLGLLTGKEKYALDRLASLRHTWVTKQREQAKEATVLQTLRHKLEIEVAVRSAQVQEEEEMIAQELEAMLELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAENLARVEQKQLKRELAALIQHYESTLQQKQADLGRLQATVMAEDHELHELRGHFEAVESQEAELRAMENARQLRVLEGE-RMRHTAMCAIRIQAMFRGHKALVAFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVAGKMKGALKAGAAAKTSVDTKKKQATATGTTKAAPVVTPKKATVAKNK 474
            M+V+ANKTEAQRIL +L+D L  L LL G+PL L  D   L  SP +  +  +   +E  V+KS                     P   +       +++   P   SP SS + SR+  + + + SIT +LVR +RR      HP      SP+ + F+  L +L+++L QRFSTTLQ+DLR+ NTLG LT KEK+  D LA L+H   TK+REQ++E T L+ LR KLE E+AV+ AQ +EE + IAQEL+  L+LA                                E L + +Q  L+ +LA ++Q+YE+ ++QKQ DL  L+AT   E +ELH LR HF  VE Q+AEL  ME  RQ R LE E RMRH   CAIRIQ++FR HKA++ ++                               GV    KG +K    +K +V    K  +AT      PV T +KA     K
Sbjct:    1 MIVIANKTEAQRILSLLEDALNSLNLLAGIPLRLSQD-PNLHFSPDVSNILSEQQDMEENVMKSFLMPPFPYSPALPIPESSPLFPPPETELSAYQSQSSNLFPSRCSPHSSGNSSRDTMLKN-HLSITRHLVRTMRR-----FHPKIDACASPTFSLFIGALCDLRNILTQRFSTTLQDDLRRVNTLGKLTDKEKHTFDSLALLQHVSTTKEREQSEEITTLEGLREKLETELAVQEAQSKEERDNIAQELKNSLDLAHTRHAAKITELRKCLEDLVPILAQEAKKYEFTEQLMKEKQTLLEEKLADVMQNYEADVKQKQDDLRWLRATAREEKNELHALREHFAVVERQQAELNNMERERQERALEAEARMRHAVECAIRIQSVFRKHKAVMGYQ-----------ALKKSGKLAGGDKKAKKKKPGVKAGTKGFVKKANISKAAVSNVSKNESAT------PVRTLRKAAHGSKK 454
The following BLAST results are available for this feature:
BLAST of NO19G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23696.14.300e-5437.03conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004501NSK004501Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01620.1NO19G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653819gene_7560Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g49gene6791Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01620.1NO19G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01620 ID=NO19G01620|Name=NO19G01620|organism=Nannochloropsis oceanica|type=gene|length=1481bp
ATGTTGGTTTTGGCCAACAAGACCGAGGCGCAGCGCATTTTGCATATTCT
CGACGACACTTTGGAGGGGTTGACCTTGCTTGGCGGCCTTCCCCTCGGCC
TGCCATCCGATAAGCAAACCCTGCAGGCTTCGCCGCAGATTTTGACCCTC
TTTCAAAAGCACCACCAGCTTGAAATTGAAGTCCTCAAGTCGCTGTCGTC
GTCGTCGTCGCCGCCGTGGTCACCGTCGTCATCACCCTCGCCGACCCCCT
TGCTCCCCTCTCTCTCCTCTGGCACCGATGTGCCCATCCGAAAAAACACG
CGATCCGCCCCTCTTTCAAGCCCTCTGTCCTCACTCTCCTTTTCTCGTGA
AGATAAAATCCACCATTTGTACCGGTCCATTACTGGCAACCTCGTGCGGG
CTTTGCGTCGTAGGGATTACATTAACGACCACCCCACTTCTATCTCGCCT
TCTACTGCTGCCTTTCTTGAAGTCCTGTACGAGCTCAAGAGCCTCTTAGC
GCAACGATTCTCCACCACCTTGCAAGAAGACTTACGACAGGCCAACACAC
TTGGCTTGTTGACGGGGAAAGAAAAATATGCCTTGGACAGACTGGCATCG
CTGAGGCACACGTGGGTTACCAAGCAGCGGGAGCAAGCCAAAGAGGCCAC
TGTCCTCCAAACATTGCGTCACAAGCTCGAGATAGAAGTGGCCGTAAGAT
CTGCTCAAGTCCAAGAGGAAGAAGAGATGATTGCACAGGAATTGGAGGCC
ATGTTGGAGCTGGCCGCGCAGCACCACGAGGAGACGACGTCTTGCCTAAC
TCAGAGTATCGAGACATTAATCCCAGAGCTAACCCGACATGCCGAGGAGC
ACACAAAGGCAGAAAATCTGGCTAGGGTCGAGCAAAAGCAGCTAAAAAGA
GAGCTAGCTGCCTTGATCCAGCACTATGAAAGCACCTTGCAGCAGAAGCA
AGCAGATTTGGGGCGGCTCCAGGCGACCGTGATGGCGGAGGACCACGAAC
TGCATGAGCTCCGAGGGCATTTTGAGGCAGTTGAGAGTCAGGAAGCAGAG
CTACGAGCAATGGAGAACGCGCGACAGCTACGTGTGTTGGAGGGGGAGCG
GATGCGTCACACTGCCATGTGTGCGATTCGCATACAGGCAATGTTTAGGG
GGCACAAGGCTTTGGTGGCTTTCAAGGCACTCAAGCTAGCTAGCAATCAA
AAAGAAAAAAAAAGCACCAAGAAGACGGGCAAAAGGGGCAAAAAGGGAGA
GAAAGCAAAGATGGGTGCAGGCGTGGCAGGAAAAATGAAGGGAGCGCTCA
AAGCAGGTGCCGCGGCAAAGACTAGTGTGGACACGAAGAAGAAACAGGCG
ACTGCAACCGGCACAACGAAGGCCGCGCCTGTCGTCACTCCCAAGAAGGC
AACGGTTGCTAAAAATAAGTAAAAGCACTCAAGGGGTACACAAACAGCCA
GATAGATGACAAGTACATTGACAAAGAACGA
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protein sequence of NO19G01620.1

>NO19G01620.1-protein ID=NO19G01620.1-protein|Name=NO19G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MLVLANKTEAQRILHILDDTLEGLTLLGGLPLGLPSDKQTLQASPQILTL
FQKHHQLEIEVLKSLSSSSSPPWSPSSSPSPTPLLPSLSSGTDVPIRKNT
RSAPLSSPLSSLSFSREDKIHHLYRSITGNLVRALRRRDYINDHPTSISP
STAAFLEVLYELKSLLAQRFSTTLQEDLRQANTLGLLTGKEKYALDRLAS
LRHTWVTKQREQAKEATVLQTLRHKLEIEVAVRSAQVQEEEEMIAQELEA
MLELAAQHHEETTSCLTQSIETLIPELTRHAEEHTKAENLARVEQKQLKR
ELAALIQHYESTLQQKQADLGRLQATVMAEDHELHELRGHFEAVESQEAE
LRAMENARQLRVLEGERMRHTAMCAIRIQAMFRGHKALVAFKALKLASNQ
KEKKSTKKTGKRGKKGEKAKMGAGVAGKMKGALKAGAAAKTSVDTKKKQA
TATGTTKAAPVVTPKKATVAKNK*
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Synonyms
Publications