NO19G01620.1, NO19G01620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01620.1
Unique NameNO19G01620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr19:486404..487884 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:486404..487884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01620.1 vs.
Match: EWM23696.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 1.100e-62
Identity = 199/478 (41.63%), Postives = 275/478 (57.53%), Query Frame = 0 
Query:    1 MLVLANKTEAQRILHILDDTLEGLTLLGGLPLGLPSDKQTLQASPQILTLFQKHHQLEIEVLKSLSSSSSPPWSPSSSPSPTPLLPSLSSGTDVPIRKNTRSAPLS-SPLSSLSFSREDKIHHLYRSITGNLVRALRRRDYINDHP---TSISPSTAAFLEVLYELKSLLAQRFSTTLQEDLRQANTLGLLTGKEKYALDRLASLRHTWVTKQREQAKEATVLQTLRHKLEIEVAVRSAQVQEEEEMIAQELEAMLELAAQHHEETTSCLTQSIETLIPELTRHAEEHTKAENLARVEQKQLKRELAALIQHYESTLQQKQADLGRLQATVMAEDHELHELRGHFEAVESQEAELRAMENARQLRVLEGE-RMRHTAMCAIRIQAMFRGHKALVAFKALKLASNQKEKKSTKKTGKRGKKGEKAKMGAGVAGKMKGALKAGAAAKTSVDTKKKQATATGTTKAAPVVTPKKATVAKNK 474
            M+V+ANKTEAQRIL +L+D L  L LL G+PL L  D   L  SP +  +  +   +E  V+KS      P       P  +PL P   +       +++   P   SP SS + SR+  + + + SIT +LVR +RR      HP      SP+ + F+  L +L+++L QRFSTTLQ+DLR+ NTLG LT KEK+  D LA L+H   TK+REQ++E T L+ LR KLE E+AV+ AQ +EE + IAQEL+  L+LA   H    + L + +E L+P L + A+++   E L + +Q  L+ +LA ++Q+YE+ ++QKQ DL  L+AT   E +ELH LR HF  VE Q+AEL  ME  RQ R LE E RMRH   CAIRIQ++FR HKA++ ++AL        KKS K  G   KK +K K   GV    KG +K    +K +V    K  +AT      PV T +KA     K
Sbjct:    1 MIVIANKTEAQRILSLLEDALNSLNLLAGIPLRLSQDPN-LHFSPDVSNILSEQQDMEENVMKSFLMPPFPYSPALPIPESSPLFPPPETELSAYQSQSSNLFPSRCSPHSSGNSSRDTMLKN-HLSITRHLVRTMRRF-----HPKIDACASPTFSLFIGALCDLRNILTQRFSTTLQDDLRRVNTLGKLTDKEKHTFDSLALLQHVSTTKEREQSEEITTLEGLREKLETELAVQEAQSKEERDNIAQELKNSLDLAHTRHAAKITELRKCLEDLVPILAQEAKKYEFTEQLMKEKQTLLEEKLADVMQNYEADVKQKQDDLRWLRATAREEKNELHALREHFAVVERQQAELNNMERERQERALEAEARMRHAVECAIRIQSVFRKHKAVMGYQAL--------KKSGKLAG-GDKKAKKKK--PGVKAGTKGFVKKANISKAAVSNVSKNESAT------PVRTLRKAAHGSKK 454
The following BLAST results are available for this feature:
BLAST of NO19G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23696.11.100e-6241.63conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01620NO19G01620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01620.1NO19G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01620.1.cds1NO19G01620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01620.1 ID=NO19G01620.1|Name=NO19G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp
ATGTTGGTTTTGGCCAACAAGACCGAGGCGCAGCGCATTTTGCATATTCT
CGACGACACTTTGGAGGGGTTGACCTTGCTTGGCGGCCTTCCCCTCGGCC
TGCCATCCGATAAGCAAACCCTGCAGGCTTCGCCGCAGATTTTGACCCTC
TTTCAAAAGCACCACCAGCTTGAAATTGAAGTCCTCAAGTCGCTGTCGTC
GTCGTCGTCGCCGCCGTGGTCACCGTCGTCATCACCCTCGCCGACCCCCT
TGCTCCCCTCTCTCTCCTCTGGCACCGATGTGCCCATCCGAAAAAACACG
CGATCCGCCCCTCTTTCAAGCCCTCTGTCCTCACTCTCCTTTTCTCGTGA
AGATAAAATCCACCATTTGTACCGGTCCATTACTGGCAACCTCGTGCGGG
CTTTGCGTCGTAGGGATTACATTAACGACCACCCCACTTCTATCTCGCCT
TCTACTGCTGCCTTTCTTGAAGTCCTGTACGAGCTCAAGAGCCTCTTAGC
GCAACGATTCTCCACCACCTTGCAAGAAGACTTACGACAGGCCAACACAC
TTGGCTTGTTGACGGGGAAAGAAAAATATGCCTTGGACAGACTGGCATCG
CTGAGGCACACGTGGGTTACCAAGCAGCGGGAGCAAGCCAAAGAGGCCAC
TGTCCTCCAAACATTGCGTCACAAGCTCGAGATAGAAGTGGCCGTAAGAT
CTGCTCAAGTCCAAGAGGAAGAAGAGATGATTGCACAGGAATTGGAGGCC
ATGTTGGAGCTGGCCGCGCAGCACCACGAGGAGACGACGTCTTGCCTAAC
TCAGAGTATCGAGACATTAATCCCAGAGCTAACCCGACATGCCGAGGAGC
ACACAAAGGCAGAAAATCTGGCTAGGGTCGAGCAAAAGCAGCTAAAAAGA
GAGCTAGCTGCCTTGATCCAGCACTATGAAAGCACCTTGCAGCAGAAGCA
AGCAGATTTGGGGCGGCTCCAGGCGACCGTGATGGCGGAGGACCACGAAC
TGCATGAGCTCCGAGGGCATTTTGAGGCAGTTGAGAGTCAGGAAGCAGAG
CTACGAGCAATGGAGAACGCGCGACAGCTACGTGTGTTGGAGGGGGAGCG
GATGCGTCACACTGCCATGTGTGCGATTCGCATACAGGCAATGTTTAGGG
GGCACAAGGCTTTGGTGGCTTTCAAGGCACTCAAGCTAGCTAGCAATCAA
AAAGAAAAAAAAAGCACCAAGAAGACGGGCAAAAGGGGCAAAAAGGGAGA
GAAAGCAAAGATGGGTGCAGGCGTGGCAGGAAAAATGAAGGGAGCGCTCA
AAGCAGGTGCCGCGGCAAAGACTAGTGTGGACACGAAGAAGAAACAGGCG
ACTGCAACCGGCACAACGAAGGCCGCGCCTGTCGTCACTCCCAAGAAGGC
AACGGTTGCTAAAAATAAGTAAAAGCACTCAAGGGGTACACAAACAGCCA
GATAGATGACAAGTACATTGACAAAGAACGA
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protein sequence of NO19G01620.1

>NO19G01620.1-protein ID=NO19G01620.1-protein|Name=NO19G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MLVLANKTEAQRILHILDDTLEGLTLLGGLPLGLPSDKQTLQASPQILTL
FQKHHQLEIEVLKSLSSSSSPPWSPSSSPSPTPLLPSLSSGTDVPIRKNT
RSAPLSSPLSSLSFSREDKIHHLYRSITGNLVRALRRRDYINDHPTSISP
STAAFLEVLYELKSLLAQRFSTTLQEDLRQANTLGLLTGKEKYALDRLAS
LRHTWVTKQREQAKEATVLQTLRHKLEIEVAVRSAQVQEEEEMIAQELEA
MLELAAQHHEETTSCLTQSIETLIPELTRHAEEHTKAENLARVEQKQLKR
ELAALIQHYESTLQQKQADLGRLQATVMAEDHELHELRGHFEAVESQEAE
LRAMENARQLRVLEGERMRHTAMCAIRIQAMFRGHKALVAFKALKLASNQ
KEKKSTKKTGKRGKKGEKAKMGAGVAGKMKGALKAGAAAKTSVDTKKKQA
TATGTTKAAPVVTPKKATVAKNK*
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mRNA from alignment at chr19:486404..487884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01620.1 ID=NO19G01620.1|Name=NO19G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr19:486404..487884+ (Nannochloropsis oceanica)
ATGTTGGTTTTGGCCAACAAGACCGAGGCGCAGCGCATTTTGCATATTCT
CGACGACACTTTGGAGGGGTTGACCTTGCTTGGCGGCCTTCCCCTCGGCC
TGCCATCCGATAAGCAAACCCTGCAGGCTTCGCCGCAGATTTTGACCCTC
TTTCAAAAGCACCACCAGCTTGAAATTGAAGTCCTCAAGTCGCTGTCGTC
GTCGTCGTCGCCGCCGTGGTCACCGTCGTCATCACCCTCGCCGACCCCCT
TGCTCCCCTCTCTCTCCTCTGGCACCGATGTGCCCATCCGAAAAAACACG
CGATCCGCCCCTCTTTCAAGCCCTCTGTCCTCACTCTCCTTTTCTCGTGA
AGATAAAATCCACCATTTGTACCGGTCCATTACTGGCAACCTCGTGCGGG
CTTTGCGTCGTAGGGATTACATTAACGACCACCCCACTTCTATCTCGCCT
TCTACTGCTGCCTTTCTTGAAGTCCTGTACGAGCTCAAGAGCCTCTTAGC
GCAACGATTCTCCACCACCTTGCAAGAAGACTTACGACAGGCCAACACAC
TTGGCTTGTTGACGGGGAAAGAAAAATATGCCTTGGACAGACTGGCATCG
CTGAGGCACACGTGGGTTACCAAGCAGCGGGAGCAAGCCAAAGAGGCCAC
TGTCCTCCAAACATTGCGTCACAAGCTCGAGATAGAAGTGGCCGTAAGAT
CTGCTCAAGTCCAAGAGGAAGAAGAGATGATTGCACAGGAATTGGAGGCC
ATGTTGGAGCTGGCCGCGCAGCACCACGAGGAGACGACGTCTTGCCTAAC
TCAGAGTATCGAGACATTAATCCCAGAGCTAACCCGACATGCCGAGGAGC
ACACAAAGGCAGAAAATCTGGCTAGGGTCGAGCAAAAGCAGCTAAAAAGA
GAGCTAGCTGCCTTGATCCAGCACTATGAAAGCACCTTGCAGCAGAAGCA
AGCAGATTTGGGGCGGCTCCAGGCGACCGTGATGGCGGAGGACCACGAAC
TGCATGAGCTCCGAGGGCATTTTGAGGCAGTTGAGAGTCAGGAAGCAGAG
CTACGAGCAATGGAGAACGCGCGACAGCTACGTGTGTTGGAGGGGGAGCG
GATGCGTCACACTGCCATGTGTGCGATTCGCATACAGGCAATGTTTAGGG
GGCACAAGGCTTTGGTGGCTTTCAAGGCACTCAAGCTAGCTAGCAATCAA
AAAGAAAAAAAAAGCACCAAGAAGACGGGCAAAAGGGGCAAAAAGGGAGA
GAAAGCAAAGATGGGTGCAGGCGTGGCAGGAAAAATGAAGGGAGCGCTCA
AAGCAGGTGCCGCGGCAAAGACTAGTGTGGACACGAAGAAGAAACAGGCG
ACTGCAACCGGCACAACGAAGGCCGCGCCTGTCGTCACTCCCAAGAAGGC
AACGGTTGCTAAAAATAAGTAAAAGCACTCAAGGGGTACACAAACAGCCA
GATAGATGACAAGTACATTGACAAAGAACGA
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Coding sequence (CDS) from alignment at chr19:486404..487884+

>NO19G01620.1 ID=NO19G01620.1|Name=NO19G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr19:486404..487884+ (Nannochloropsis oceanica)
ATGTTGGTTTTGGCCAACAAGACCGAGGCGCAGCGCATTTTGCATATTCT
CGACGACACTTTGGAGGGGTTGACCTTGCTTGGCGGCCTTCCCCTCGGCC
TGCCATCCGATAAGCAAACCCTGCAGGCTTCGCCGCAGATTTTGACCCTC
TTTCAAAAGCACCACCAGCTTGAAATTGAAGTCCTCAAGTCGCTGTCGTC
GTCGTCGTCGCCGCCGTGGTCACCGTCGTCATCACCCTCGCCGACCCCCT
TGCTCCCCTCTCTCTCCTCTGGCACCGATGTGCCCATCCGAAAAAACACG
CGATCCGCCCCTCTTTCAAGCCCTCTGTCCTCACTCTCCTTTTCTCGTGA
AGATAAAATCCACCATTTGTACCGGTCCATTACTGGCAACCTCGTGCGGG
CTTTGCGTCGTAGGGATTACATTAACGACCACCCCACTTCTATCTCGCCT
TCTACTGCTGCCTTTCTTGAAGTCCTGTACGAGCTCAAGAGCCTCTTAGC
GCAACGATTCTCCACCACCTTGCAAGAAGACTTACGACAGGCCAACACAC
TTGGCTTGTTGACGGGGAAAGAAAAATATGCCTTGGACAGACTGGCATCG
CTGAGGCACACGTGGGTTACCAAGCAGCGGGAGCAAGCCAAAGAGGCCAC
TGTCCTCCAAACATTGCGTCACAAGCTCGAGATAGAAGTGGCCGTAAGAT
CTGCTCAAGTCCAAGAGGAAGAAGAGATGATTGCACAGGAATTGGAGGCC
ATGTTGGAGCTGGCCGCGCAGCACCACGAGGAGACGACGTCTTGCCTAAC
TCAGAGTATCGAGACATTAATCCCAGAGCTAACCCGACATGCCGAGGAGC
ACACAAAGGCAGAAAATCTGGCTAGGGTCGAGCAAAAGCAGCTAAAAAGA
GAGCTAGCTGCCTTGATCCAGCACTATGAAAGCACCTTGCAGCAGAAGCA
AGCAGATTTGGGGCGGCTCCAGGCGACCGTGATGGCGGAGGACCACGAAC
TGCATGAGCTCCGAGGGCATTTTGAGGCAGTTGAGAGTCAGGAAGCAGAG
CTACGAGCAATGGAGAACGCGCGACAGCTACGTGTGTTGGAGGGGGAGCG
GATGCGTCACACTGCCATGTGTGCGATTCGCATACAGGCAATGTTTAGGG
GGCACAAGGCTTTGGTGGCTTTCAAGGCACTCAAGCTAGCTAGCAATCAA
AAAGAAAAAAAAAGCACCAAGAAGACGGGCAAAAGGGGCAAAAAGGGAGA
GAAAGCAAAGATGGGTGCAGGCGTGGCAGGAAAAATGAAGGGAGCGCTCA
AAGCAGGTGCCGCGGCAAAGACTAGTGTGGACACGAAGAAGAAACAGGCG
ACTGCAACCGGCACAACGAAGGCCGCGCCTGTCGTCACTCCCAAGAAGGC
AACGGTTGCTAAAAATAAGTAA
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Synonyms
Publications