NO19G01420, NO19G01420 (gene) Nannochloropsis oceanica

Overview
NameNO19G01420
Unique NameNO19G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr19:438090..439220 +

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Properties
Property NameValue
DescriptionHeat shock protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:438090..439220 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0042803protein homodimerization activity
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR009012GrpE_head
IPR000740GrpE
Homology
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_011629290.1 (uncharacterized protein LOC18425237 isoform X1 [Amborella trichopoda])

HSP 1 Score: 112.5 bits (280), Expect = 2.900e-21
Identity = 62/178 (34.83%), Postives = 103/178 (57.87%), Query Frame = 0
Query:  199 NSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            ++L  ++K  +++E E  S+   +  LSE   EL+ E D +V  +  D+DN + +   + L + +  +  V   ++ ++D+FERA+   K   E E  I  SY+ +    V+ M++ G+V V TVG PFD  LH+ +  E S E+ E II +EF KGF +G++++RP+ V  S GPGP
Sbjct:  145 STLVEIEKFLQSIEVEKNSLSNKVAALSE---ELSSERD-RVLRISADFDNFRKRTERERLSLVSNAQGEVIENLLPILDNFERAKAQIKVETEGEEKINNSYQSIYKQFVEIMVSLGVVGVDTVGNPFDPLLHEAIMREDSTEFEESIILQEFRKGFKLGDRLLRPSMVKVSAGPGP 318          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_006647500.2 (PREDICTED: protein GrpE-like, partial [Oryza brachyantha])

HSP 1 Score: 112.1 bits (279), Expect = 3.800e-21
Identity = 70/233 (30.04%), Postives = 125/233 (53.65%), Query Frame = 0
Query:  149 AMDDDKGKTDKIKEELEHELPVGEHEEEGAEAAGKP-----AAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            A + D+      +EE E E+      ++GA A   P     A  +    + +D    +  +++   ++E+E  S+   + TL     EL+ E D ++  +  D+DN + +   + L + T  +  V   ++ V+D+FERA+   K   E+EA I +SY+ +    ++ + + G+ +V+T+G+PFD  LH+ +  E S E+ E +I +EF KGF +GE+++RPA V  S GPGP
Sbjct:    5 ATEADEAAQTATEEESETEVTGDTGADDGAGAEETPSVLVTALQSYKEALANDDETKIAEIEEFLLSIEEEKNSLLSKIATLG---AELSTERD-RILRISADFDNYRKRVEREKLSLMTNVQGEVIENLLPVLDNFERAKTQIKVETEQEAKINDSYQSIYKQFIEILNSLGVEDVETIGKPFDPMLHEAIMREESVEYEEGVIIQEFRKGFKLGERLLRPAMVKVSAGPGP 233          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: GAQ77970.1 (heat shock protein GrpE [Klebsormidium nitens])

HSP 1 Score: 111.7 bits (278), Expect = 5.000e-21
Identity = 61/171 (35.67%), Postives = 100/171 (58.48%), Query Frame = 0
Query:  209 EAMEKEMASIDENLQTLSEQFGELAGEWD---GKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            EA+E+++ +++ +  + S +  EL  E +    +   +  D+DN + +   +   +A++ R +V  E++ ++D+FERAR A K   E E  I  SY+G+    V  +   G+V V   G PFD  +H+ +  E S+E+ E I+T+EF KGF IGEK++RPA V  S GPGP
Sbjct:  133 EALEEQLRALEGS--SSSSRAEELTKEMEVLKDRYLRLNADFDNFRKRSDREKASLASSVRGDVIEELLPMIDNFERARDAVKASTEGEQKIDASYQGIYKQFVDILKKLGIVPVPGAGTPFDPAVHEAIMQEESNEYAEGIVTQEFRKGFQIGEKLLRPAMVKVSSGPGP 301          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_022036161.1 (uncharacterized protein LOC110938002 isoform X1 [Helianthus annuus] >OTG29733.1 putative grpE nucleotide exchange factor [Helianthus annuus])

HSP 1 Score: 111.7 bits (278), Expect = 5.000e-21
Identity = 55/183 (30.05%), Postives = 101/183 (55.19%), Query Frame = 0
Query:  194 VDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            + ++   L  ++  K  +E+++A++ + L T  +           +V  +  D+DN + +   + + +    +  V   ++ V+D+FERA+ A K   E+E  I  SY+ +    V+ + + G+V V+T G+PFD  LH+ +  E S E+ E ++ +EF KGF IGE+++RP+ V  S GPGP
Sbjct:  142 ISEIETYLKSIEDEKLVLERKLATLSDELSTAKD-----------RVLRISADFDNFRKRTERERISLVANAQGEVVENLLPVLDNFERAKAAIKVENEKEEKINNSYQSIYKQFVEILGSLGVVPVETTGQPFDPLLHEAIMREESTEFGEGVVIQEFRKGFRIGERLLRPSMVKVSAGPGP 313          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: PON63524.1 (GrpE nucleotide exchange factor [Trema orientalis])

HSP 1 Score: 111.7 bits (278), Expect = 5.000e-21
Identity = 58/194 (29.90%), Postives = 106/194 (54.64%), Query Frame = 0
Query:  183 KPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            K A  +   + + ++ + L  L+  K  +E+++AS+ E + T  +           ++  +  D+DN + +   +   + T  +  V   ++ V+D+FERA++  K   E E  I  SY+ +    ++ + + G+V V+TVG PFD  LH+ +  E S+E+ E II +EF KGF +G++++RP+ V  S GPGP
Sbjct:  131 KEALASNDESKIAEIESFLKSLEDEKLGLERKLASLSEEMSTEKD-----------RILRISADFDNFRKRTERERTSLVTNAQGEVVESLLPVLDNFERAKVQIKVETEGEEKINNSYQSIYKQFIEILTSLGVVPVETVGNPFDPLLHEAIMREDSEEFEEGIILQEFRKGFKLGDRLLRPSMVKVSAGPGP 313          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: EMS64517.1 (Protein grpE [Triticum urartu])

HSP 1 Score: 111.3 bits (277), Expect = 6.600e-21
Identity = 69/219 (31.51%), Postives = 115/219 (52.51%), Query Frame = 0
Query:  172 EHEEEGAEAAGKPAAGAAPTTVVDDVFNSLPFLQKRKEAM----EKEMASIDENLQTLSEQFGELAGEWDG----------KVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            E E  G   A   +AG   T  V      +  LQ  KEA+    E ++A I+  L T+ ++   L G+             ++  +  D+DN + +   + L + T  +  V   ++ V+D+FERA+   K   E EA I +SY+ +   +V+ + + G+ +V+TVG+PFD  LH+ +  E S E+ + ++ +EF KGF +GE+++RPA V  S GPGP
Sbjct:    6 ETEVTGGTVADDGSAGTEETPSV-----LITALQSYKEALMNDDEAKIAEIESFLLTIEDEKNSLMGKITALDAELTTERDRIVRISSDFDNYRKRTEREKLSLMTNVQGEVVESLLPVLDNFERAKTQIKVETEREAKINDSYQSIYKQLVEILKSLGVEDVETVGKPFDPMLHEAIMREESVEYEDGVVLQEFRKGFKLGERLLRPAMVKVSAGPGP 219          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_023543468.1 (uncharacterized protein LOC111803344 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 6.600e-21
Identity = 60/170 (35.29%), Postives = 102/170 (60.00%), Query Frame = 0
Query:  209 EAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMK--RDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            +++E E  +++  L++L+E   EL+ E   KV +++   D+DN + +   + L +    +  V   ++GV+D+FERAR   K   E E  I +SY+ +     + + + G+V V+T+G+PFD  LH+ +  E S E+ E II  EF KGF++GE+++RP+ V  S GPGP
Sbjct:  147 KSIEDEKLAVERKLESLTE---ELSVE---KVRILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSTEFEEGIILNEFRKGFLLGERLLRPSMVKVSAGPGP 310          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_011070018.1 (uncharacterized protein LOC105155769 isoform X1 [Sesamum indicum])

HSP 1 Score: 110.9 bits (276), Expect = 8.600e-21
Identity = 59/168 (35.12%), Postives = 98/168 (58.33%), Query Frame = 0
Query:  209 EAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            +++E E   ++  + TLSE   EL+ E D +V  +  D+DN + +   + L + T  +  V   ++ V+D+FERA+   K   E E  I  SY+ +     + + + G+V V+TVG+PFD  LH+ +  E S E+ + II  E+ KGF++GE+++RP+ V  S GPGP
Sbjct:  157 KSIEDEKIGLERKVATLSE---ELSSERD-RVLRISADFDNFRKRTERERLSLVTNAQGEVVESLLSVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFSEILGSLGVVPVETVGKPFDPMLHEAIMREDSTEYEDGIIIEEYRKGFLLGERLLRPSMVKVSAGPGP 320          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: WP_075486761.1 (nucleotide exchange factor GrpE [Prochlorococcus marinus])

HSP 1 Score: 110.9 bits (276), Expect = 8.600e-21
Identity = 62/181 (34.25%), Postives = 100/181 (55.25%), Query Frame = 0
Query:  195 DDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPG 376
            +++ N++     R E +EKE        +TL  Q+  ++ ++D       RD D+LKA+  + +L             I+ +VD+FERAR   KP GEE  A+  SY+G+   +V+ +  +G+  ++ VG+PFD  LH+ +  E SDE+ EDII  E  +G+ +  KV+R A V  S+GPG
Sbjct:   50 EELKNTISNNDARLEQLEKEH-------ETLKNQYVRISADFDNFRKRQSRDQDDLKAQLVSKSL-----------TAILPIVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVEVLKQQGVAPMRVVGQPFDPNLHEAVLREPSDEYKEDIILEELQRGYHLDGKVLRHALVKVSMGPG 212          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: PON76639.1 (GrpE nucleotide exchange factor [Parasponia andersonii])

HSP 1 Score: 110.9 bits (276), Expect = 8.600e-21
Identity = 61/201 (30.35%), Postives = 108/201 (53.73%), Query Frame = 0
Query:  175 EEGAEAAGKPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPG 376
            E+  E + K         +++   N++  ++ R + +  +   +  N+ TL+E+          K   ++ D+DN + +   D L + T  +  V   ++ +VD+FERA+   KP  ++E  I  SY+G+    V+ M +  +  V TVG+PFD  LH+ +  E S E+ E II +EF +GF++G++++RPA V  SLGPG
Sbjct:   91 EQNGELSLKSLIKVYKEAILEGDENTVSAIESRMDLIGNDKDELVLNVSTLTEEI----KSGKEKYIRLQADFDNFRKRTEKDRLSIRTDAQGEVIESLLAMVDNFERAKQQLKPETDKEKKIDASYQGIYKQFVEIMRSLRVAVVPTVGKPFDPALHEAIAREESQEFKEGIIIQEFRRGFLLGDRLLRPATVKVSLGPG 287          
The following BLAST results are available for this feature:
BLAST of NO19G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_011629290.12.900e-2134.83uncharacterized protein LOC18425237 isoform X1 [Am... [more]
XP_006647500.23.800e-2130.04PREDICTED: protein GrpE-like, partial [Oryza brach... [more]
GAQ77970.15.000e-2135.67heat shock protein GrpE [Klebsormidium nitens][more]
XP_022036161.15.000e-2130.05uncharacterized protein LOC110938002 isoform X1 [H... [more]
PON63524.15.000e-2129.90GrpE nucleotide exchange factor [Trema orientalis][more]
EMS64517.16.600e-2131.51Protein grpE [Triticum urartu][more]
XP_023543468.16.600e-2135.29uncharacterized protein LOC111803344 [Cucurbita pe... [more]
XP_011070018.18.600e-2135.12uncharacterized protein LOC105155769 isoform X1 [S... [more]
WP_075486761.18.600e-2134.25nucleotide exchange factor GrpE [Prochlorococcus m... [more]
PON76639.18.600e-2130.35GrpE nucleotide exchange factor [Parasponia anders... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004466NSK004466Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01420.1NO19G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599096gene_7537Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100165g2gene6824Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01420.1NO19G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01420 ID=NO19G01420|Name=NO19G01420|organism=Nannochloropsis oceanica|type=gene|length=1131bp
ATGATGATCGGAGCCGCACAGCACGCAAACGGCAACAGCAACTTTCTAGA
CGCCGGCGTCCTGCTGTTTCTGTGTCTTGCCACTTTGCAGCGTGTCCAGC
TGCAACAGCAGCTACGGCGCTGTAACGACGATAGCAACCTTATCTTTTCC
CCTTCTCAACCCCATCCGCAAACCAGTCGAACAGTCTCTGCTCTCTTCTC
CAAGCCGCACGGGCAAAGCAAGCAAGAAATGACGCAGCGCCACGGCACAA
CCCACACCGCCACATTGCTGGGCCTGCTCCTGGCTACCAACAGTTTGGTA
AATGCCTTCCTGCCCATTACTCCCGTGCTAATGCGCAGTAGCATCAGGAT
CCAGACTTTGTCTTCCAATATTGCAATGAATTACATCTCCTTCCGCCCTG
CCTCCCCCGCGTTCAACCACGCCCCCGTCGCCCTTGCGGCCGCCGCTATG
GACGACGACAAAGGAAAGACGGACAAGATTAAAGAAGAGCTTGAGCATGA
GCTACCGGTAGGAGAGCACGAAGAGGAAGGAGCTGAGGCAGCAGGCAAGC
CTGCAGCAGGTGCCGCGCCTACTACGGTGGTGGACGACGTGTTCAACTCG
CTTCCCTTCTTGCAGAAACGGAAGGAGGCGATGGAGAAGGAAATGGCGTC
CATCGACGAAAACCTCCAAACACTGTCCGAACAATTTGGGGAACTGGCTG
GAGAATGGGATGGGAAAGTGGCAGTGATGAAGAGGGACTACGATAACCTG
AAGGCTAAATACTACAACGACACGCTTGAGGTAGCGACGACTGGTCGATC
CAACGTATTCGTCGAAATCATGGGTGTCGTCGATGATTTCGAGAGGGCGC
GGATGGCGTACAAGCCGGGGGGGGAGGAAGAGGCGGCGATTCTGGAGAGC
TACGAGGGAGTGAAAGATGCCATTGTAAAGGGGATGATGAATGAGGGCTT
GGTGGAGGTCAAGACTGTGGGGGAACCGTTTGATTTCAAATTGCACGATT
GCATGTTCACGGAGGCGAGTGATGAGTGGCCGGAAGATATCATTACGCGG
GAGTTTAGTAAAGGGTTTATGATAGGGGAGAAGGTGGTGAGGCCCGCCAA
GGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
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protein sequence of NO19G01420.1

>NO19G01420.1-protein ID=NO19G01420.1-protein|Name=NO19G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MMIGAAQHANGNSNFLDAGVLLFLCLATLQRVQLQQQLRRCNDDSNLIFS
PSQPHPQTSRTVSALFSKPHGQSKQEMTQRHGTTHTATLLGLLLATNSLV
NAFLPITPVLMRSSIRIQTLSSNIAMNYISFRPASPAFNHAPVALAAAAM
DDDKGKTDKIKEELEHELPVGEHEEEGAEAAGKPAAGAAPTTVVDDVFNS
LPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNL
KAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILES
YEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITR
EFSKGFMIGEKVVRPAKVACSLGPGP*
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Synonyms
Publications