NO19G01420.1, NO19G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01420.1
Unique NameNO19G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr19:438090..439220 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:438090..439220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01420.1 vs.
Match: EWM23643.1 (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 384.8 bits (987), Expect = 3.100e-103
Identity = 208/291 (71.48%), Postives = 232/291 (79.73%), Query Frame = 0 
Query:   86 TATLLGLLLATNSLVNAFLPITPVLMRSSIRIQTLSSNIAMNYISFRPASPAFNHAPVALAAAAMDDDKGKTDKIKEELEHELPVGEHEEEGAEAAGKPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            TA LLGL L T +LV+AF+P T +    S +  ++ + I    + F+  S A  H P+  +AAA DDD GK DK++EELEHELP GEHEE     A      A  T  VDDVFNSLPFLQKRKEAMEKEMASIDENL  + E+F ELAGEWDGKVAVM++D++NLKAKYYNDT EVA TGRSNVFVEIM VVDDFERARMAYK  GEEEA ILE+YEGVKDAI+KGMM EGLVEVKTVGEPFDFKLHDCMFTE SDE+PED+ITREFSKGFMIGEKVVRPAKVACSLGPGP
Sbjct:   19 TAVLLGLFLTTGTLVHAFVPATHISKGRSSQPLSVRAWI----LPFQ--SQARFHVPLLQSAAATDDDAGK-DKLEEELEHELPEGEHEEADRSTA------APATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296
The following BLAST results are available for this feature:
BLAST of NO19G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23643.13.100e-10371.48heat shock protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01420NO19G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01420.1NO19G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01420.1.cds1NO19G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01420.1 ID=NO19G01420.1|Name=NO19G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGATGATCGGAGCCGCACAGCACGCAAACGGCAACAGCAACTTTCTAGA
CGCCGGCGTCCTGCTGTTTCTGTGTCTTGCCACTTTGCAGCGTGTCCAGC
TGCAACAGCAGCTACGGCGCTGTAACGACGATAGCAACCTTATCTTTTCC
CCTTCTCAACCCCATCCGCAAACCAGTCGAACAGTCTCTGCTCTCTTCTC
CAAGCCGCACGGGCAAAGCAAGCAAGAAATGACGCAGCGCCACGGCACAA
CCCACACCGCCACATTGCTGGGCCTGCTCCTGGCTACCAACAGTTTGGTA
AATGCCTTCCTGCCCATTACTCCCGTGCTAATGCGCAGTAGCATCAGGAT
CCAGACTTTGTCTTCCAATATTGCAATGAATTACATCTCCTTCCGCCCTG
CCTCCCCCGCGTTCAACCACGCCCCCGTCGCCCTTGCGGCCGCCGCTATG
GACGACGACAAAGGAAAGACGGACAAGATTAAAGAAGAGCTTGAGCATGA
GCTACCGGTAGGAGAGCACGAAGAGGAAGGAGCTGAGGCAGCAGGCAAGC
CTGCAGCAGGTGCCGCGCCTACTACGGTGGTGGACGACGTGTTCAACTCG
CTTCCCTTCTTGCAGAAACGGAAGGAGGCGATGGAGAAGGAAATGGCGTC
CATCGACGAAAACCTCCAAACACTGTCCGAACAATTTGGGGAACTGGCTG
GAGAATGGGATGGGAAAGTGGCAGTGATGAAGAGGGACTACGATAACCTG
AAGGCTAAATACTACAACGACACGCTTGAGGTAGCGACGACTGGTCGATC
CAACGTATTCGTCGAAATCATGGGTGTCGTCGATGATTTCGAGAGGGCGC
GGATGGCGTACAAGCCGGGGGGGGAGGAAGAGGCGGCGATTCTGGAGAGC
TACGAGGGAGTGAAAGATGCCATTGTAAAGGGGATGATGAATGAGGGCTT
GGTGGAGGTCAAGACTGTGGGGGAACCGTTTGATTTCAAATTGCACGATT
GCATGTTCACGGAGGCGAGTGATGAGTGGCCGGAAGATATCATTACGCGG
GAGTTTAGTAAAGGGTTTATGATAGGGGAGAAGGTGGTGAGGCCCGCCAA
GGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
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protein sequence of NO19G01420.1

>NO19G01420.1-protein ID=NO19G01420.1-protein|Name=NO19G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MMIGAAQHANGNSNFLDAGVLLFLCLATLQRVQLQQQLRRCNDDSNLIFS
PSQPHPQTSRTVSALFSKPHGQSKQEMTQRHGTTHTATLLGLLLATNSLV
NAFLPITPVLMRSSIRIQTLSSNIAMNYISFRPASPAFNHAPVALAAAAM
DDDKGKTDKIKEELEHELPVGEHEEEGAEAAGKPAAGAAPTTVVDDVFNS
LPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNL
KAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILES
YEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITR
EFSKGFMIGEKVVRPAKVACSLGPGP*
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mRNA from alignment at chr19:438090..439220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01420.1 ID=NO19G01420.1|Name=NO19G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at chr19:438090..439220+ (Nannochloropsis oceanica)
ATGATGATCGGAGCCGCACAGCACGCAAACGGCAACAGCAACTTTCTAGA
CGCCGGCGTCCTGCTGTTTCTGTGTCTTGCCACTTTGCAGCGTGTCCAGC
TGCAACAGCAGCTACGGCGCTGTAACGACGATAGCAACCTTATCTTTTCC
CCTTCTCAACCCCATCCGCAAACCAGTCGAACAGTCTCTGCTCTCTTCTC
CAAGCCGCACGGGCAAAGCAAGCAAGAAATGACGCAGCGCCACGGCACAA
CCCACACCGCCACATTGCTGGGCCTGCTCCTGGCTACCAACAGTTTGGTA
AATGCCTTCCTGCCCATTACTCCCGTGCTAATGCGCAGTAGCATCAGGAT
CCAGACTTTGTCTTCCAATATTGCAATGAATTACATCTCCTTCCGCCCTG
CCTCCCCCGCGTTCAACCACGCCCCCGTCGCCCTTGCGGCCGCCGCTATG
GACGACGACAAAGGAAAGACGGACAAGATTAAAGAAGAGCTTGAGCATGA
GCTACCGGTAGGAGAGCACGAAGAGGAAGGAGCTGAGGCAGCAGGCAAGC
CTGCAGCAGGTGCCGCGCCTACTACGGTGGTGGACGACGTGTTCAACTCG
CTTCCCTTCTTGCAGAAACGGAAGGAGGCGATGGAGAAGGAAATGGCGTC
CATCGACGAAAACCTCCAAACACTGTCCGAACAATTTGGGGAACTGGCTG
GAGAATGGGATGGGAAAGTGGCAGTGATGAAGAGGGACTACGATAACCTG
AAGGCTAAATACTACAACGACACGCTTGAGGTAGCGACGACTGGTCGATC
CAACGTATTCGTCGAAATCATGGGTGTCGTCGATGATTTCGAGAGGGCGC
GGATGGCGTACAAGCCGGGGGGGGAGGAAGAGGCGGCGATTCTGGAGAGC
TACGAGGGAGTGAAAGATGCCATTGTAAAGGGGATGATGAATGAGGGCTT
GGTGGAGGTCAAGACTGTGGGGGAACCGTTTGATTTCAAATTGCACGATT
GCATGTTCACGGAGGCGAGTGATGAGTGGCCGGAAGATATCATTACGCGG
GAGTTTAGTAAAGGGTTTATGATAGGGGAGAAGGTGGTGAGGCCCGCCAA
GGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
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Coding sequence (CDS) from alignment at chr19:438090..439220+

>NO19G01420.1 ID=NO19G01420.1|Name=NO19G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr19:438090..439220+ (Nannochloropsis oceanica)
ATGATGATCGGAGCCGCACAGCACGCAAACGGCAACAGCAACTTTCTAGA
CGCCGGCGTCCTGCTGTTTCTGTGTCTTGCCACTTTGCAGCGTGTCCAGC
TGCAACAGCAGCTACGGCGCTGTAACGACGATAGCAACCTTATCTTTTCC
CCTTCTCAACCCCATCCGCAAACCAGTCGAACAGTCTCTGCTCTCTTCTC
CAAGCCGCACGGGCAAAGCAAGCAAGAAATGACGCAGCGCCACGGCACAA
CCCACACCGCCACATTGCTGGGCCTGCTCCTGGCTACCAACAGTTTGGTA
AATGCCTTCCTGCCCATTACTCCCGTGCTAATGCGCAGTAGCATCAGGAT
CCAGACTTTGTCTTCCAATATTGCAATGAATTACATCTCCTTCCGCCCTG
CCTCCCCCGCGTTCAACCACGCCCCCGTCGCCCTTGCGGCCGCCGCTATG
GACGACGACAAAGGAAAGACGGACAAGATTAAAGAAGAGCTTGAGCATGA
GCTACCGGTAGGAGAGCACGAAGAGGAAGGAGCTGAGGCAGCAGGCAAGC
CTGCAGCAGGTGCCGCGCCTACTACGGTGGTGGACGACGTGTTCAACTCG
CTTCCCTTCTTGCAGAAACGGAAGGAGGCGATGGAGAAGGAAATGGCGTC
CATCGACGAAAACCTCCAAACACTGTCCGAACAATTTGGGGAACTGGCTG
GAGAATGGGATGGGAAAGTGGCAGTGATGAAGAGGGACTACGATAACCTG
AAGGCTAAATACTACAACGACACGCTTGAGGTAGCGACGACTGGTCGATC
CAACGTATTCGTCGAAATCATGGGTGTCGTCGATGATTTCGAGAGGGCGC
GGATGGCGTACAAGCCGGGGGGGGAGGAAGAGGCGGCGATTCTGGAGAGC
TACGAGGGAGTGAAAGATGCCATTGTAAAGGGGATGATGAATGAGGGCTT
GGTGGAGGTCAAGACTGTGGGGGAACCGTTTGATTTCAAATTGCACGATT
GCATGTTCACGGAGGCGAGTGATGAGTGGCCGGAAGATATCATTACGCGG
GAGTTTAGTAAAGGGTTTATGATAGGGGAGAAGGTGGTGAGGCCCGCCAA
GGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
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Synonyms
Publications