NO19G01420, NO19G01420 (gene) Nannochloropsis oceanica

Overview
NameNO19G01420
Unique NameNO19G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr19:438090..439220 +

Link to JBrowse

Properties
Property NameValue
DescriptionHeat shock protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:438090..439220 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0042803protein homodimerization activity
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR009012GrpE_head
IPR000740GrpE
Homology
BLAST of NO19G01420 vs. NCBI_GenBank
Match: EWM23643.1 (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 384.8 bits (987), Expect = 3.100e-103
Identity = 212/292 (72.60%), Postives = 233/292 (79.79%), Query Frame = 0
Query:   86 TATLLGLLLATNSLVNAFLPITPVLM-RSSIRIQTLSSNIAMNYISFRPASPAFNHAPVALAAAAMDDDKGKTDKIKEELEHELPVGEHEEEGAEAAGKPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            TA LLGL L T +LV+AF+P T +   RSS   Q LS  +    + F+  S A  H P+  +AAA DDD GK DK++EELEHELP GEHEE     A      A  T  VDDVFNSLPFLQKRKEAMEKEMASIDENL  + E+F ELAGEWDGKVAVM++D++NLKAKYYNDT EVA TGRSNVFVEIM VVDDFERARMAYK  GEEEA ILE+YEGVKDAI+KGMM EGLVEVKTVGEPFDFKLHDCMFTE SDE+PED+ITREFSKGFMIGEKVVRPAKVACSLGPGP
Sbjct:   19 TAVLLGLFLTTGTLVHAFVPATHISKGRSS---QPLS--VRAWILPFQ--SQARFHVPLLQSAAATDDDAGK-DKLEEELEHELPEGEHEEADRSTA------APATNAVDDVFNSLPFLQKRKEAMEKEMASIDENLAMMEEKFSELAGEWDGKVAVMQKDFENLKAKYYNDTQEVAVTGRSNVFVEIMSVVDDFERARMAYKQVGEEEAVILEAYEGVKDAILKGMMAEGLVEVKTVGEPFDFKLHDCMFTEQSDEYPEDVITREFSKGFMIGEKVVRPAKVACSLGPGP 296          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: AFA52569.1 (heat shock protein GrpE [Vaucheria litorea])

HSP 1 Score: 131.0 bits (328), Expect = 8.000e-27
Identity = 61/179 (34.08%), Postives = 111/179 (62.01%), Query Frame = 0
Query:  195 DDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLG 374
            DD+  +  FL K+ E + K++A  +E +   + +  +   EW  ++  ++R+++N++A+  NDT+E +T+ +  V  EI+ V D+F RA  A  P  E E A+++ Y+ + + +    +  G+  + TVGEPFD+ LH+ +  ++S E+ EDI+  E +KGFM+G++++RPA VA S G
Sbjct:   68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQSS-EFDEDIVCLELTKGFMVGKELIRPAMVAVSTG 245          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: CBN76646.1 (heat shock protein GrpE [Ectocarpus siliculosus])

HSP 1 Score: 126.7 bits (317), Expect = 1.500e-25
Identity = 68/212 (32.08%), Postives = 115/212 (54.25%), Query Frame = 0
Query:  167 ELPVGEHEEEGAEAAGK----PAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGP 375
            E P G       + AG+    P + AA    VDD+ NS  FL K+ E ++K++ +   ++ T   Q  E   EW  +V  +++++  LK +      +    G++     I+GV D+FERA  A     + E A++  Y+   D ++K +    LVEV T+G PFD+ +H+ +  E +DE+PED++ + F KG+ +G+ +VRPA VA ++ P
Sbjct:   70 EQPAGPFSSWVKKTAGRFGRGPFSRAAKKDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVPP 281          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: OMO69937.1 (GrpE nucleotide exchange factor [Corchorus capsularis])

HSP 1 Score: 119.0 bits (297), Expect = 3.100e-23
Identity = 77/238 (32.35%), Postives = 127/238 (53.36%), Query Frame = 0
Query:  155 GKTDKIKEELEHELPVGEHEEEGAEAAGKPAAGAAPTTVVDDVFNS--LPFLQKRKEAM-----------EKEMASIDENLQTLSEQFGELAGEWD---GKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            G+T+  + + E + P  E   +GA A  + AA A  ++ VDD+ +S  +  LQ  KEA+           E  + SI+++   L ++ G L  E      +V  +  D+DN + +   + L + T  +  V   ++ V+D+FERA+   K   E E  I  SY+ +    ++ + + G+  V+TVG PFD  LH+ +  E S+E+ E II +EF KGF IG++++RP+ V  S GPGP
Sbjct:   68 GETETTETQQEVQEPQIEDSSDGAVAVEEDAAAADESSDVDDIPSSGMVSLLQAYKEALASNDESKVANIEAYLNSIEDDKVDLEKKVGSLLEELSVEKDRVLRISADFDNFRKRTERERLSLVTNAQGEVLENLLPVLDNFERAKAQIKIETEGEEKINNSYQSIYKQFMEILGSLGVEPVETVGNPFDPMLHEAIMREDSEEFEEGIIIQEFRKGFKIGDRLLRPSMVKVSAGPGP 305          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_024391116.1 (uncharacterized protein LOC112289777 [Physcomitrella patens] >PNR44343.1 hypothetical protein PHYPA_016727 [Physcomitrella patens])

HSP 1 Score: 115.2 bits (287), Expect = 4.500e-22
Identity = 63/196 (32.14%), Postives = 107/196 (54.59%), Query Frame = 0
Query:  181 AGKPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            A + A  A     + DV + L  +   ++++  ++ S+ E + T  +++  L             D+DN + +   D L  A   R  V   ++ +VD+FERA+ + K   E E  I  +Y+G+    V+ M + G+V V+TVG+PFD  LH+ +  E S E+ ED++++EF +GF IG++++RPA V  S GPGP
Sbjct:  114 AYREAVAADDEGAISDVESQLEAIANERDSLGLKVNSLIEEISTNKDRYLRL-----------NADFDNYRKRSERDRLATAGNVRGEVIESLLPMVDNFERAKTSIKTETEAEQKIDNAYQGIYKQFVEIMKSLGVVAVETVGKPFDPNLHEAIMREDSTEFAEDVVSQEFRRGFRIGDRLLRPAMVKVSSGPGP 298          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: ADB23407.1 (chloroplast CGE1 [Physcomitrella patens])

HSP 1 Score: 114.8 bits (286), Expect = 5.900e-22
Identity = 63/196 (32.14%), Postives = 107/196 (54.59%), Query Frame = 0
Query:  181 AGKPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            A + A  A     + DV + L  +   ++++  ++ S+ E + T  +++  L             D+DN + +   D L  A   R  V   ++ +VD+FERA+ + K   E E  I  +Y+G+    V+ M + G+V V+TVG+PFD  LH+ +  E S E+ ED++++EF +GF IG++++RPA V  S GPGP
Sbjct:  114 AYREAVAADDEGAISDVESQLEAIANERDSLGLKVNSLIEEISTNKDRYLRL-----------NADFDNYRKRSERDRLATAGNVRGEVIESLLPMVDNFERAKTSIKTETEAEQKIDXAYQGIYKQFVEIMKSLGVVAVETVGKPFDPNLHEAIMREDSTEFAEDVVSQEFRRGFRIGDRLLRPAMVKVSSGPGP 298          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_015885577.1 (PREDICTED: protein GrpE [Ziziphus jujuba])

HSP 1 Score: 114.4 bits (285), Expect = 7.700e-22
Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 0
Query:  204 LQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPG 376
            ++ R + +EKEM  +D+ L TL+      +G+   K   ++ D+DN + +   + L V T  +  V   ++ +VD+FERA+   KP  E+E  I  SY+G+    V+ M +  +  V TVG+PFD  LH+ +  E S E+ E II +EF +GF++G++++RPA V  S GPG
Sbjct:  127 VEARIDRIEKEMHELDQKLSTLTADI--TSGK--EKYIRLQADFDNFRKRSEKERLTVRTNAQGEVIESLLPMVDNFERAKQQIKPETEKEIKIDASYQGIYKQFVEIMRSLHVAVVATVGKPFDPLLHEAIAREESHEFKEGIIIQEFRRGFLLGDRLLRPATVKVSSGPG 294          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_022154525.1 (uncharacterized protein LOC111021782 isoform X1 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.000e-21
Identity = 61/168 (36.31%), Postives = 100/168 (59.52%), Query Frame = 0
Query:  209 EAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            +++E E  +++  LQ+L+E   EL  E D ++  +  D+DN + +   + L +    +  V   ++GV+D+FERAR   K   E E  I +SY+ +     + + + G+V V+TVG+PFD  LH+ +  E S E+ E II  EF KGF++GE+++RP+ V  S GPGP
Sbjct:  147 KSIEDEKLAVERKLQSLTE---ELTIEKD-RILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYKQFTEILASLGVVPVETVGKPFDPLLHEAIMREDSTEFEEGIILDEFRKGFLLGERLLRPSMVKVSAGPGP 310          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: XP_023883907.1 (uncharacterized protein LOC111996184 isoform X1 [Quercus suber] >XP_023883908.1 uncharacterized protein LOC111996184 isoform X2 [Quercus suber] >POE71139.1 protein grpe [Quercus suber])

HSP 1 Score: 114.0 bits (284), Expect = 1.000e-21
Identity = 62/194 (31.96%), Postives = 107/194 (55.15%), Query Frame = 0
Query:  183 KPAAGAAPTTVVDDVFNSLPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            K A  +   + V ++ + L  +++ K ++E ++AS+ E L T  E           ++  +  D+DN + +   D L + T  +  V   ++ V+D+FERA+   K   E E  I  SY+ +    ++ + + G+V V+TVG PFD  LH+ +  E S+E+ E II +EF KGF +G++++RP+ V  S GPGP
Sbjct:  129 KEALASNDESGVAEIESFLKSIEEEKISLEGKVASLSEELLTEKE-----------RILRISADFDNFRKRTERDRLSLLTNAQGEVVESLLPVLDNFERAKSQIKVETEGEEKINNSYQSISKQFIEILNSLGVVPVETVGNPFDPLLHEAIMREDSNEYEEGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGP 311          
BLAST of NO19G01420 vs. NCBI_GenBank
Match: KVI12173.1 (GrpE nucleotide exchange factor [Cynara cardunculus var. scolymus])

HSP 1 Score: 113.2 bits (282), Expect = 1.700e-21
Identity = 59/168 (35.12%), Postives = 99/168 (58.93%), Query Frame = 0
Query:  209 EAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNLKAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILESYEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITREFSKGFMIGEKVVRPAKVACSLGPGP 377
            +++E E   ++  L TLS+   EL+   D +V  +  D+DN + +   + L +    +  V   ++GV+D+FERA+   K   E+E  I  SY+ +    V+ + + G+V V+T+G+PFD  LH+ +  E S E+ E ++ +EF KGF IGE+++RP+ V  S GPGP
Sbjct:  150 KSIEDEKLVLERQLATLSD---ELSNAKD-RVLRISADFDNFRKRTERERLSLVANAQGEVVENLLGVLDNFERAKSQIKVDTEKEEKINNSYQSIYKQFVEVLGSLGVVPVETIGQPFDPLLHEAIMREDSTEFDEGVVIQEFRKGFRIGERLLRPSMVKVSAGPGP 313          
The following BLAST results are available for this feature:
BLAST of NO19G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23643.13.100e-10372.60heat shock protein [Nannochloropsis gaditana][more]
AFA52569.18.000e-2734.08heat shock protein GrpE [Vaucheria litorea][more]
CBN76646.11.500e-2532.08heat shock protein GrpE [Ectocarpus siliculosus][more]
OMO69937.13.100e-2332.35GrpE nucleotide exchange factor [Corchorus capsula... [more]
XP_024391116.14.500e-2232.14uncharacterized protein LOC112289777 [Physcomitrel... [more]
ADB23407.15.900e-2232.14chloroplast CGE1 [Physcomitrella patens][more]
XP_015885577.17.700e-2236.05PREDICTED: protein GrpE [Ziziphus jujuba][more]
XP_022154525.11.000e-2136.31uncharacterized protein LOC111021782 isoform X1 [M... [more]
XP_023883907.11.000e-2131.96uncharacterized protein LOC111996184 isoform X1 [Q... [more]
KVI12173.11.700e-2135.12GrpE nucleotide exchange factor [Cynara cardunculu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004466NSK004466Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01420.1NO19G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599096gene_7537Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100165g2gene6824Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01420.1NO19G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01420 ID=NO19G01420|Name=NO19G01420|organism=Nannochloropsis oceanica|type=gene|length=1131bp
ATGATGATCGGAGCCGCACAGCACGCAAACGGCAACAGCAACTTTCTAGA
CGCCGGCGTCCTGCTGTTTCTGTGTCTTGCCACTTTGCAGCGTGTCCAGC
TGCAACAGCAGCTACGGCGCTGTAACGACGATAGCAACCTTATCTTTTCC
CCTTCTCAACCCCATCCGCAAACCAGTCGAACAGTCTCTGCTCTCTTCTC
CAAGCCGCACGGGCAAAGCAAGCAAGAAATGACGCAGCGCCACGGCACAA
CCCACACCGCCACATTGCTGGGCCTGCTCCTGGCTACCAACAGTTTGGTA
AATGCCTTCCTGCCCATTACTCCCGTGCTAATGCGCAGTAGCATCAGGAT
CCAGACTTTGTCTTCCAATATTGCAATGAATTACATCTCCTTCCGCCCTG
CCTCCCCCGCGTTCAACCACGCCCCCGTCGCCCTTGCGGCCGCCGCTATG
GACGACGACAAAGGAAAGACGGACAAGATTAAAGAAGAGCTTGAGCATGA
GCTACCGGTAGGAGAGCACGAAGAGGAAGGAGCTGAGGCAGCAGGCAAGC
CTGCAGCAGGTGCCGCGCCTACTACGGTGGTGGACGACGTGTTCAACTCG
CTTCCCTTCTTGCAGAAACGGAAGGAGGCGATGGAGAAGGAAATGGCGTC
CATCGACGAAAACCTCCAAACACTGTCCGAACAATTTGGGGAACTGGCTG
GAGAATGGGATGGGAAAGTGGCAGTGATGAAGAGGGACTACGATAACCTG
AAGGCTAAATACTACAACGACACGCTTGAGGTAGCGACGACTGGTCGATC
CAACGTATTCGTCGAAATCATGGGTGTCGTCGATGATTTCGAGAGGGCGC
GGATGGCGTACAAGCCGGGGGGGGAGGAAGAGGCGGCGATTCTGGAGAGC
TACGAGGGAGTGAAAGATGCCATTGTAAAGGGGATGATGAATGAGGGCTT
GGTGGAGGTCAAGACTGTGGGGGAACCGTTTGATTTCAAATTGCACGATT
GCATGTTCACGGAGGCGAGTGATGAGTGGCCGGAAGATATCATTACGCGG
GAGTTTAGTAAAGGGTTTATGATAGGGGAGAAGGTGGTGAGGCCCGCCAA
GGTAGCTTGTTCTTTAGGCCCTGGTCCGTAG
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protein sequence of NO19G01420.1

>NO19G01420.1-protein ID=NO19G01420.1-protein|Name=NO19G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MMIGAAQHANGNSNFLDAGVLLFLCLATLQRVQLQQQLRRCNDDSNLIFS
PSQPHPQTSRTVSALFSKPHGQSKQEMTQRHGTTHTATLLGLLLATNSLV
NAFLPITPVLMRSSIRIQTLSSNIAMNYISFRPASPAFNHAPVALAAAAM
DDDKGKTDKIKEELEHELPVGEHEEEGAEAAGKPAAGAAPTTVVDDVFNS
LPFLQKRKEAMEKEMASIDENLQTLSEQFGELAGEWDGKVAVMKRDYDNL
KAKYYNDTLEVATTGRSNVFVEIMGVVDDFERARMAYKPGGEEEAAILES
YEGVKDAIVKGMMNEGLVEVKTVGEPFDFKLHDCMFTEASDEWPEDIITR
EFSKGFMIGEKVVRPAKVACSLGPGP*
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Synonyms
Publications