NO19G01410, NO19G01410 (gene) Nannochloropsis oceanica

Overview
NameNO19G01410
Unique NameNO19G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2775
Alignment locationchr19:435186..437960 -

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Properties
Property NameValue
DescriptionTrna pseudouridine synthase mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:435186..437960 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
Homology
BLAST of NO19G01410 vs. NCBI_GenBank
Match: EWM23644.1 (trna pseudouridine synthase mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 532.7 bits (1371), Expect = 1.800e-147
Identity = 349/760 (45.92%), Postives = 423/760 (55.66%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHPRFNDSKEPHSGSYAAQVR--ENEDGQGIQLGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMK------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMV---KEGNMRDISIAMTTADSDTAVATE--------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLLADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWLYHGRFKYEKSGGKDVFAARGLTIAEQRSEVPKKEVMAAKIKEKDEKDGMRR--------GEEGKEKEDVVID 733
            KRK   S+E   E G   K   F + + PHSGSYAA+ R   +EDGQ + LGNKKKVA++IGYCGTDFQGMQMNPGA +IEAELEKAM+EAGCIK+ NFG+LQKIGWSR+GRTDKGVHAAAQ+VGCKLHVKMK                                                                       XXXXX           G V   +EG     +++ + AD    ++ E        A                               +PD LA A E TR +IN +LPPSIR+HG+LRATRGFNAKNDCT+RRYCYWLPTFLLA+ E            VGAWLD CA XXXXXXXXXXXX                                                                                S NYPQPD+  L+QC+  RL+ YR S ++++ L  TL++Y+GTHKFHNFSIRMS+RSG+V+RYIM VE+ +PVVV E G       G+ +G+EW  +T+ GQAFLLHQIRKMVAVAI ++RGSA  TLIEDAY+DVMLTLPMAPS+GL+LDKA F  YN RATQIG AASLDWE +        + PSLSV VL+ER++RF EE IVGHI + E KTL FTKW+YH R KYE  G  D FAARGLT+AEQRSE PKK+VMA  ++E++E    +R         E+GKE+E ++++
Sbjct:   49 KRK---SDESAAEKG-GPKRQCFYEDRAPHSGSYAAKQRHENSEDGQDL-LGNKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQVVGCKLHVKMKSEENVDENRKEEEENAEGTGKGGANESLHAGKEGEEGWSSMEIVKEGGPPMGAQEDETSDKVKSKCSESAGXXXXXTGEGGEVSAPVGKVEGREEGGHAPGAVSPSEADGPENISHENTSGGTIAAPFTTLSTSKGDGESEGRPDALSQEPPHRPPPAPDALAAALEATRMAINRQLPPSIRIHGILRATRGFNAKNDCTRRRYCYWLPTFLLAEVE-----------EVGAWLDGCAXXXXXXXXXXXXXEAGGAQGI------------------------------------------------------------------------SLNYPQPDLSALRQCFRSRLRVYRASSRQLERLGRTLRKYVGTHKFHNFSIRMSFRSGSVKRYIMAVEMGDPVVVGEDG-------GEDKGLEWVCVTLTGQAFLLHQIRKMVAVAIMVSRGSAPATLIEDAYQDVMLTLPMAPSEGLYLDKASFALYNQRATQIGQAASLDWEGEEEEEDKGGRAPSLSVGVLRERIRRFLEEEIVGHILRREDKTLVFTKWMYHCRQKYE-MGELDAFAARGLTVAEQRSEAPKKQVMAEMMQEREEAARGKRLEQQEGACDEQGKEEEKLLVE 712          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: XP_005855852.1 (trna pseudouridine synthase, partial [Nannochloropsis gaditana CCMP526] >EKU20509.1 trna pseudouridine synthase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51
Identity = 147/340 (43.24%), Postives = 174/340 (51.18%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHPRFNDSKEPHSGSYAAQVR-EN-EDGQGIQLGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMK------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMV---KEGNMRDISIAMTTADSDTAVATE--------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYW 321
            KRK   S+E   E+G   K   F + + PHSGSYAA+ R EN EDGQ + LGNKKKVA++IGYCGTDFQGMQMNPGA +IEAELEKAM+EAGCIK+ NFG+LQKIGWSR+GRTDKGVHAAAQ+VGCKLHVKMK                                                                       XXXXX           G V   +EG     +++ + A     ++ E        A                               +PD LA A E TR +IN +LPPSIR+HG+LRATRGFNAKNDCT+RRYCYW
Sbjct:   42 KRK---SDESAAEEG-GPKRQCFYEDRAPHSGSYAAKQRHENAEDGQDL-LGNKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQVVGCKLHVKMKSEENVDENRKEEEENAEGTGKGGANESLHAGKEGEEGWSSMEIVKEGGPPMGAQEDETSDKVKSKCSESAGXXXXXTGEGGEVSAPVGKVEGREEGGHAPGAVSPSEAGGPENISHENTSGGTIAAPFTTLSTSKGDGESEGRPDALSQEPPHRPPPAPDALAAALEATRMAINRQLPPSIRIHGILRATRGFNAKNDCTRRRYCYW 376          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: ETP45636.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P10297])

HSP 1 Score: 176.8 bits (447), Expect = 2.500e-40
Identity = 167/644 (25.93%), Postives = 237/644 (36.80%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP----RFNDSKEPHSGSYAAQVRENE-DGQGIQ-LGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLL-----ADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   G ++    K P    R + S   H GSYAAQ + +E     +Q L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+A    +    +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+      + A   EE++     G   W                                                                                               G   +     D  ++    LE  K +R+S + ++ L +TLK+Y+GTH FHNF+ +M   +    R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ PS++ A     V++FK + I  HI K E +T  + KWL
Sbjct:   13 RRKNKQTRREGSDEQQQDKEPQPDRRADRSDAVHPGSYAAQRQPSETPAADVQSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDIAGFMAK----VNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPTFIFGKRTRSSASKNEEKQA---EGASQW---------------------------------------------------------------------------------------------PSGLRDSEEGFNDNVVIDSTTLEAHKAFRLSDETLEQLNHTLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDHSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PSVAAA-----VEQFKRDFIFDHIMKHEERTRTYAKWL 420          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: ETI47755.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P1569] >ETK87732.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >ETL41172.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >ETL94314.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica] >ETP17605.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 166/644 (25.78%), Postives = 234/644 (36.34%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP----RFNDSKEPHSGSYAAQVRENE-DGQGIQ-LGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLL-----ADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   G ++    K P    R + S   H GSYAAQ + +E     +Q L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+A    +    +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+      + A   EE++     G   W                                                                                                         D  ++    LE  K +R+S + ++ L  TLK+Y+GTH FHNF+ +M   +    R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ PS++ A     V++FK + I  HI K E +T  + KWL
Sbjct:   13 RRKNKQTRREGSDEQQQDKEPQPDRRADRSDAVHPGSYAAQRQPSETPAADVQSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDIAGFMAK----VNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPTFIFGKRTRSSASKNEEKQA---EGASQWPSDLRDSEEGFN---------------------------------------------------------------------------------------------DNVMIDSTTLEAHKAFRLSDETLEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDHSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PSVAAA-----VEQFKRDFIFDHIMKHEERTRTYAKWL 420          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: ETM47545.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 166/644 (25.78%), Postives = 234/644 (36.34%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP----RFNDSKEPHSGSYAAQVRENED-GQGIQ-LGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLL-----ADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   G ++    K P    R + S   H GSYAAQ + +E     +Q L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+A    +    +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+      + A   EE++     G   W                                                                                                         D  ++    LE  K +R+S + ++ L  TLK+Y+GTH FHNF+ +M   +    R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ PS++ A     V++FK + I  HI K E +T  + KWL
Sbjct:   13 RRKNKQTRREGSDEQQQDKEPQPDRRADRSDAVHPGSYAAQRQPSETRAADVQSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDIAGFMAK----VNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPTFIFGKRTRSSASKNEEKQA---EGASQWPSDLRDSEEGFN---------------------------------------------------------------------------------------------DNVMIDSTTLEAHKAFRLSDETLEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDHSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PSVAAA-----VEQFKRDFIFDHIMKHEERTRTYAKWL 420          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: XP_008904780.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica INRA-310] >ETN09634.1 tRNA pseudouridine(38-40) synthase [Phytophthora parasitica INRA-310] >KUF99105.1 MICAL protein [Phytophthora nicotianae])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 166/644 (25.78%), Postives = 234/644 (36.34%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP----RFNDSKEPHSGSYAAQVRENE-DGQGIQ-LGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLL-----ADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   G ++    K P    R + S   H GSYAAQ + +E     +Q L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+A    +    +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+      + A   EE++     G   W                                                                                                         D  ++    LE  K +R+S + ++ L  TLK+Y+GTH FHNF+ +M   +    R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ PS++ A     V++FK + I  HI K E +T  + KWL
Sbjct:   13 RRKNKQTRREGSDEQQQDKEPQPDRRADRSDAVHPGSYAAQRQPSETPAADVQSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDIAGFMAK----VNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPTFIFGKRTRSSASKNEEKQA---EGASQWPSDLRDSEEGFN---------------------------------------------------------------------------------------------DNVMIDSTTLEAHKAFRLSDETLEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDHSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PSVAAA-----VEQFKRDFIFDHIMKHEERTRTYAKWL 420          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: ETO76521.1 (tRNA pseudouridine(38-40) synthase [Phytophthora parasitica P1976])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 167/644 (25.93%), Postives = 235/644 (36.49%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP----RFNDSKEPHSGSYAAQVRENE-DGQGIQ-LGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLL-----ADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   G ++    K P    R + S   H GSYAAQ + +E     +Q L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I   N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+A    +    +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+      + A   EE++     G   W                                                                                               G   +     D  ++    LE  K +R+S + ++ L  TLK+Y+GTH FHNF+ +M   +    R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ PS++ A     V++FK + I  HI K E +T  + KWL
Sbjct:   13 RRKNKQTRREGSDEQQQDKEPQPDRRADRSDAVHPGSYAAQRQPSETPAADVQSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIADSNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDIAGFMAK----VNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPTFIFGKRTRSSASKNEEKQA---EGASQW---------------------------------------------------------------------------------------------PSGLRDSEEGFNDNVVIDSTTLEAHKAFRLSDETLEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTGHSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PSVAAA-----VEQFKRDFIFDHIMKHEERTRTYAKWL 420          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: KUF77764.1 (Pseudouridine synthase [Phytophthora nicotianae])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 166/644 (25.78%), Postives = 234/644 (36.34%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP----RFNDSKEPHSGSYAAQVRENE-DGQGIQ-LGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLL-----ADAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   G ++    K P    R + S   H GSYAAQ + +E     +Q L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+A    +    +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+      + A   EE++     G   W                                                                                                         D  ++    LE  K +R+S + ++ L  TLK+Y+GTH FHNF+ +M   +    R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ PS++ A     V++FK + I  HI K E +T  + KWL
Sbjct:   13 RRKNKQTRREGSDEQQQDKEPQPDRRADRSDAVHPGSYAAQRQPSETPAADVQSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDIAGFMAK----VNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPTFIFGKRTRSSASKNEEKQA---EGASQWPSDLRDSEEGFN---------------------------------------------------------------------------------------------DNVMIDSTTLEAHKAFRLSDETLEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDHSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PSVAAA-----VEQFKRDFIFDHIMKHEERTRTYAKWL 420          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: POM67945.1 (tRNA pseudouridine(38-40) synthase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 169/645 (26.20%), Postives = 230/645 (35.66%), Query Frame = 0
Query:   36 KRKSGGSEEVGGEDGCAYKHP--RFNDSKEPHSGSYAAQ-VRENEDGQGIQLGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLLA---------DAEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            +RK+  +   GGE       P  R + S   H GSYAAQ  R         L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                                                                             DD+  AF      +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+           DAE  EE+E           DA  Q                                                                                             +     D  ++    LE  K +R+  + ++ L  TLK+Y+GTH FHNF+ +M   +    R+I+  E  +P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G    + IE A E   + LP APS GL+L +A FE YN +          D    S    + K+ P ++ A     V++FK + I  HI K E  T  + KWL
Sbjct:   13 RRKNKQARHDGGEQQGKEPQPDRRADRSDTIHPGSYAAQHQRSQTPADSTSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV------------------------------------------------------------------------------------------------------------GDDI-PAFVA---KVNAALPEDIRVMHMVTVTKNFNAKMTCDQRTYEYLAPTFIFGKRTRAAVPKDAEKSEEKEA----------DAATQWPSDLR--------------------------------------------------------------------------------------DSEEGLNDNVVIDSTTLEAHKAFRLDDETLEKLNTTLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAEQPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDTSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMA--------DSIQTSHPPLDLKE-PGVAAA-----VEQFKHDYIFDHIMKHEEHTRTYAKWL 421          
BLAST of NO19G01410 vs. NCBI_GenBank
Match: XP_009513782.1 (hypothetical protein PHYSODRAFT_308307 [Phytophthora sojae] >EGZ26507.1 hypothetical protein PHYSODRAFT_308307 [Phytophthora sojae])

HSP 1 Score: 173.7 bits (439), Expect = 2.100e-39
Identity = 163/621 (26.25%), Postives = 226/621 (36.39%), Query Frame = 0
Query:   57 RFNDSKEPHSGSYAAQVRENE-----DGQGIQLGNKKKVALVIGYCGTDFQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGVHAAAQIVGCKLHVKMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGMVKEGNMRDISIAMTTADSDTAVATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDDLADAFERTRDSINEKLPPSIRVHGVLRATRGFNAKNDCTKRRYCYWLPTFLLAD----AEGREEREGGVKGGVGAWLDACAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWL 669
            R   S   H GSYAAQ +        D   + L  K++  L + +CG ++ GMQMN G  +IEAELE+A+FEAG I + N+G LQKIGWSRA RTDKGVHAA Q++  KLHV                                                     G   DI   +                                                           +N  LP  IRV  ++  T+ FNAK  C +R Y Y  PTF+ A     A  +E  +   KG       A AQ                                                                                             +     D  ++    LE  K +R+S + ++ L  TLK Y+GTH FHNF+ +M   +   +R+I+  E   P V  +              +EW  + VVGQ+FLLH IRKM+  A++I  G   P+ IE A +   + LP APS GL+L +A FE YN     + +A S+     S    + K+ P+++ A     V+ FK + I  HI K E +T  + KWL
Sbjct:   35 RAERSDAVHPGSYAAQRQRQHPTDAADKPALSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV-----------------------------------------------------GEDADIPAFV---------------------------------------------------------GKVNAALPEDIRVMHMVTVTKNFNAKMTCDQRTYEYLAPTFIFAKRARAAAIKESEKTEEKGDA-----ATAQWPSDLR--------------------------------------------------------------------------------------DSEEGFDDNVVIDNTTLEAHKAFRLSDETLEKLNATLKEYVGTHNFHNFTSKMEPTNPQAKRFIISFEAERPFVQND--------------MEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDPSTIERAMQLTKMDLPKAPSVGLYLAQAHFEVYN-----LKMAESI---QTSHPPLDLKE-PAVAAA-----VELFKRDFIFDHIMKHEERTRTYAKWL 426          
The following BLAST results are available for this feature:
BLAST of NO19G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23644.11.800e-14745.92trna pseudouridine synthase mitochondrial [Nannoch... [more]
XP_005855852.11.100e-5143.24trna pseudouridine synthase, partial [Nannochlorop... [more]
ETP45636.12.500e-4025.93tRNA pseudouridine(38-40) synthase [Phytophthora p... [more]
ETI47755.11.200e-3925.78tRNA pseudouridine(38-40) synthase [Phytophthora p... [more]
ETM47545.11.200e-3925.78tRNA pseudouridine(38-40) synthase [Phytophthora p... [more]
XP_008904780.11.200e-3925.78tRNA pseudouridine(38-40) synthase [Phytophthora p... [more]
ETO76521.11.200e-3925.93tRNA pseudouridine(38-40) synthase [Phytophthora p... [more]
KUF77764.11.200e-3925.78Pseudouridine synthase [Phytophthora nicotianae][more]
POM67945.11.200e-3926.20tRNA pseudouridine(38-40) synthase [Phytophthora p... [more]
XP_009513782.12.100e-3926.25hypothetical protein PHYSODRAFT_308307 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004467NSK004467Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01410.1NO19G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531679gene_7536Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100165g3gene6823Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01410.1NO19G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01410 ID=NO19G01410|Name=NO19G01410|organism=Nannochloropsis oceanica|type=gene|length=2775bp
ATGGGTAGAGGCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAG
GGGAGGTAGGGGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAG
CCAACAAGCGCAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGT
TGTGCTTATAAGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGG
GTCTTATGCTGCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGT
TGGGGAACAAGAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGAT
TTTCAAGGCATGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCT
GGAAAAGGCCATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGA
ATTTGCAGAAAATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTT
CATGCTGCAGCGCAGATTGTGGGATGTAAGCTGCATGTGAAGATGAAAGA
GGAGGAAGATGAGGGGGGGGAGAAGGTGATGGCAAAAAAGGGTACGGGGG
AGAGAGGCGGAGGAGGTGGAGAGGGAGGGGGAGGGGTGGCGGTTGCAAAG
GAGGAGAAGAAAAAGAAGGAGGAAGAGGGGACTGGAATGGTGAAAGAAGG
AAATATGAGAGATATTTCCATCGCCATGACAACTGCGGACTCGGATACAG
CTGTAGCGACAGAAGCAGTGCAAACAGCAACAGCAACATCTACAACAGTA
GCGCCACCACCACCAGCAGCAGCAGCTTCACCTACCACCCAAGCCTCCTC
CTCCGCCCTTTCTCCCGATGATCTTGCGGACGCTTTCGAACGTACCCGCG
ATTCAATCAACGAAAAACTTCCTCCTTCCATCCGTGTCCACGGTGTATTA
CGTGCAACGCGAGGGTTCAACGCTAAAAATGATTGTACCAAACGTAGATA
TTGCTACTGGCTCCCCACTTTCCTGCTGGCGGATGCTGAGGGTCGGGAAG
AGAGAGAGGGAGGTGTGAAAGGAGGGGTGGGTGCGTGGTTGGATGCTTGT
GCGCAGCAGAAGAAGAAAAAGGAGAGGAAAGTGGTCTTGGATGCCAAGGC
AGAAGGGGAGGAGGGAGTAAAGAAAGAGGGGTTGGAGGTGGAGGAGCAGG
AGGAGGAGCAGGAGGAGGAAAAAGACGGGATAAGTACAGAGCAGCAGGAT
GAAGAAGACGAAGAAACGGGCACTGGCGGGGCAGATGACGACGACGATGA
CGATGCCCCCCCTCCTCCTCCTCTTGTCCCTGCCCTTGTCTCCTCCTCCC
CCCCTCCCTCCTCATCCAACCGGGGAAGTCCCTCCGCGAACTACCCTCAG
CCTGACATGGGCTTGCTGAAACAGTGCTACCTGGAGAGATTGAAGCCTTA
TCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACACTGAAGCGGT
ATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCATGAGCTATCGG
TCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTATCGGAGCCGGT
GGTGGTGATGGAGGGAGGGGAGGAGACAAGTGAAGAGACAGGGAAGGGAG
AAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAGGCGTTTTTGTTG
CATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGgtaagcagcttagt
tttttatttagttctttttgggtctatcttctatttatttgcctatacat
atttttattaatctctctgtattatacatacaaatttatttgtctttgat
ttaaccaatttatttatttcttaatttatacatgcactgcagccatgatg
gcagctgtgcatgttcatactttcttccttttaaaatcacaaataaaaaa
ataaatgtttattccataccgaaatatacgcacagATTACCCGTGGCTCC
GCCACTCCCACCCTTATCGAAGACGCCTACGAGGACGTGATGCTCACCTT
GCCCATGGCCCCGTCCGACGGCCTCTTCCTCGACAAAGCCTTTTTTGAAC
AGTACAACAACCGCGCGACGCAGATCGGCTTGGCTGCGTCCCTGGACTGG
GAAGATGACAGTGGAGGTGgtgaggaagggagggaaagacgggcggcagg
gaagagggggagggagagagagtggaaataaaaagatagaataactgtca
attaaaactcacgagtatttcttattcccatcctcctctccttgccctgc
ttcactagCCACGAATCAGAAACAAGTACCGTCGTTGTCAGTGGCAGTAC
TGAAGGAACGAGTGAAAAGATTTAAGGAGGAGGCGATTGTCGGTCATATC
ACCAAGAGCGAGGGCAAGgtacgtgcgagaaaagagtgtctgtgtgtgtg
actttcattcgcttgttccatttttttcgtgctgtgtgcgtgcttgtctt
tgttgtagtttgcttatcttcctctcgctaccaacccccattttttgctt
ccttcctccttccctagACGTTGGCTTTCACCAAGTGGCTTTATCACGGT
CGTTTTAAGTATGAAAAAAGTGGGGGGAAGGACGTATTTGCCGCGCGTGG
GCTCACGATTGCAGAGCAGCGAAGCGAGGTTCCAAAAAAGGAGGTTATGG
CGGCCAAGATCAAGGAGAAGGATGAGAAGGATGGGATGAGGCGGGGGGAG
GAGGGAAAGGAGAAGGAGGATGTGGTGATTGACGGAGGGGTAGTGGAAGA
GAGGGGAGGTGAAAAGGGCAAGTGA
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protein sequence of NO19G01410.1

>NO19G01410.1-protein ID=NO19G01410.1-protein|Name=NO19G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp
MGRGRGGWGGGGRGRGRGGRGRGKWGDGGGGPKANKRKSGGSEEVGGEDG
CAYKHPRFNDSKEPHSGSYAAQVRENEDGQGIQLGNKKKVALVIGYCGTD
FQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGV
HAAAQIVGCKLHVKMKEEEDEGGEKVMAKKGTGERGGGGGEGGGGVAVAK
EEKKKKEEEGTGMVKEGNMRDISIAMTTADSDTAVATEAVQTATATSTTV
APPPPAAAASPTTQASSSALSPDDLADAFERTRDSINEKLPPSIRVHGVL
RATRGFNAKNDCTKRRYCYWLPTFLLADAEGREEREGGVKGGVGAWLDAC
AQQKKKKERKVVLDAKAEGEEGVKKEGLEVEEQEEEQEEEKDGISTEQQD
EEDEETGTGGADDDDDDDAPPPPPLVPALVSSSPPPSSSNRGSPSANYPQ
PDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYR
SGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLL
HQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFE
QYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAI
VGHITKSEGKTLAFTKWLYHGRFKYEKSGGKDVFAARGLTIAEQRSEVPK
KEVMAAKIKEKDEKDGMRRGEEGKEKEDVVIDGGVVEERGGEKGK*
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Synonyms
Publications