NO19G01410.1, NO19G01410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01410.1
Unique Name	NO19G01410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2238
Alignment location	chr19:435186..437960 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:435186..437960 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO19G01410.1 vs.
Match: EWM23644.1 (trna pseudouridine synthase mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 334.0 bits (855), Expect = 1.200e-87
Identity = 175/296 (59.12%), Postives = 221/296 (74.66%), Query Frame = 0

Query:  445 SANYPQPDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYRSGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLLHQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFEQYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAIVGHITKSEGKTLAFTKWLYHGRFKYEKSGGKDVFAARGLTIAEQRSEVPKKEVMAAKIKEKDEKDGMRR--------GEEGKEKEDVVID 733
            S NYPQPD+  L+QC+  RL+ YR S ++++ L  TL++Y+GTHKFHNFSIRMS+RSG+V+RYIM VE+ +PVVV E G       G+ +G+EW  +T+ GQAFLLHQIRKMVAVAI ++RGSA  TLIEDAY+DVMLTLPMAPS+GL+LDKA F  YN RATQIG AASLDWE +        + PSLSV VL+ER++RF EE IVGHI + E KTL FTKW+YH R KYE  G  D FAARGLT+AEQRSE PKK+VMA  ++E++E    +R         E+GKE+E ++++
Sbjct:  425 SLNYPQPDLSALRQCFRSRLRVYRASSRQLERLGRTLRKYVGTHKFHNFSIRMSFRSGSVKRYIMAVEMGDPVVVGEDG-------GEDKGLEWVCVTLTGQAFLLHQIRKMVAVAIMVSRGSAPATLIEDAYQDVMLTLPMAPSEGLYLDKASFALYNQRATQIGQAASLDWEGEEEEEDKGGRAPSLSVGVLRERIRRFLEEEIVGHILRREDKTLVFTKWMYHCRQKYE-MGELDAFAARGLTVAEQRSEAPKKQVMAEMMQEREEAARGKRLEQQEGACDEQGKEEEKLLVE 712

The following BLAST results are available for this feature:

BLAST of NO19G01410.1 vs.

BLAST of NO19G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23644.1	1.200e-87	59.12	trna pseudouridine synthase mitochondrial [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G01410	NO19G01410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01410.1	NO19G01410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G01410.1.cds1	NO19G01410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G01410.1.cds2	NO19G01410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G01410.1.cds3	NO19G01410.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G01410.1.cds4	NO19G01410.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:435186..437960-
coding sequence from alignment at chr19:435186..437960-

mRNA sequence

>NO19G01410.1 ID=NO19G01410.1|Name=NO19G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp
ATGGGTAGAGGCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAG
GGGAGGTAGGGGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAG
CCAACAAGCGCAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGT
TGTGCTTATAAGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGG
GTCTTATGCTGCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGT
TGGGGAACAAGAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGAT
TTTCAAGGCATGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCT
GGAAAAGGCCATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGA
ATTTGCAGAAAATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTT
CATGCTGCAGCGCAGATTGTGGGATGTAAGCTGCATGTGAAGATGAAAGA
GGAGGAAGATGAGGGGGGGGAGAAGGTGATGGCAAAAAAGGGTACGGGGG
AGAGAGGCGGAGGAGGTGGAGAGGGAGGGGGAGGGGTGGCGGTTGCAAAG
GAGGAGAAGAAAAAGAAGGAGGAAGAGGGGACTGGAATGGTGAAAGAAGG
AAATATGAGAGATATTTCCATCGCCATGACAACTGCGGACTCGGATACAG
CTGTAGCGACAGAAGCAGTGCAAACAGCAACAGCAACATCTACAACAGTA
GCGCCACCACCACCAGCAGCAGCAGCTTCACCTACCACCCAAGCCTCCTC
CTCCGCCCTTTCTCCCGATGATCTTGCGGACGCTTTCGAACGTACCCGCG
ATTCAATCAACGAAAAACTTCCTCCTTCCATCCGTGTCCACGGTGTATTA
CGTGCAACGCGAGGGTTCAACGCTAAAAATGATTGTACCAAACGTAGATA
TTGCTACTGGCTCCCCACTTTCCTGCTGGCGGATGCTGAGGGTCGGGAAG
AGAGAGAGGGAGGTGTGAAAGGAGGGGTGGGTGCGTGGTTGGATGCTTGT
GCGCAGCAGAAGAAGAAAAAGGAGAGGAAAGTGGTCTTGGATGCCAAGGC
AGAAGGGGAGGAGGGAGTAAAGAAAGAGGGGTTGGAGGTGGAGGAGCAGG
AGGAGGAGCAGGAGGAGGAAAAAGACGGGATAAGTACAGAGCAGCAGGAT
GAAGAAGACGAAGAAACGGGCACTGGCGGGGCAGATGACGACGACGATGA
CGATGCCCCCCCTCCTCCTCCTCTTGTCCCTGCCCTTGTCTCCTCCTCCC
CCCCTCCCTCCTCATCCAACCGGGGAAGTCCCTCCGCGAACTACCCTCAG
CCTGACATGGGCTTGCTGAAACAGTGCTACCTGGAGAGATTGAAGCCTTA
TCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACACTGAAGCGGT
ATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCATGAGCTATCGG
TCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTATCGGAGCCGGT
GGTGGTGATGGAGGGAGGGGAGGAGACAAGTGAAGAGACAGGGAAGGGAG
AAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAGGCGTTTTTGTTG
CATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGATTACCCGTGGCTC
CGCCACTCCCACCCTTATCGAAGACGCCTACGAGGACGTGATGCTCACCT
TGCCCATGGCCCCGTCCGACGGCCTCTTCCTCGACAAAGCCTTTTTTGAA
CAGTACAACAACCGCGCGACGCAGATCGGCTTGGCTGCGTCCCTGGACTG
GGAAGATGACAGTGGAGGTGCCACGAATCAGAAACAAGTACCGTCGTTGT
CAGTGGCAGTACTGAAGGAACGAGTGAAAAGATTTAAGGAGGAGGCGATT
GTCGGTCATATCACCAAGAGCGAGGGCAAGACGTTGGCTTTCACCAAGTG
GCTTTATCACGGTCGTTTTAAGTATGAAAAAAGTGGGGGGAAGGACGTAT
TTGCCGCGCGTGGGCTCACGATTGCAGAGCAGCGAAGCGAGGTTCCAAAA
AAGGAGGTTATGGCGGCCAAGATCAAGGAGAAGGATGAGAAGGATGGGAT
GAGGCGGGGGGAGGAGGGAAAGGAGAAGGAGGATGTGGTGATTGACGGAG
GGGTAGTGGAAGAGAGGGGAGGTGAAAAGGGCAAGTGA

protein sequence of NO19G01410.1

>NO19G01410.1-protein ID=NO19G01410.1-protein|Name=NO19G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp
MGRGRGGWGGGGRGRGRGGRGRGKWGDGGGGPKANKRKSGGSEEVGGEDG
CAYKHPRFNDSKEPHSGSYAAQVRENEDGQGIQLGNKKKVALVIGYCGTD
FQGMQMNPGAASIEAELEKAMFEAGCIKKENFGNLQKIGWSRAGRTDKGV
HAAAQIVGCKLHVKMKEEEDEGGEKVMAKKGTGERGGGGGEGGGGVAVAK
EEKKKKEEEGTGMVKEGNMRDISIAMTTADSDTAVATEAVQTATATSTTV
APPPPAAAASPTTQASSSALSPDDLADAFERTRDSINEKLPPSIRVHGVL
RATRGFNAKNDCTKRRYCYWLPTFLLADAEGREEREGGVKGGVGAWLDAC
AQQKKKKERKVVLDAKAEGEEGVKKEGLEVEEQEEEQEEEKDGISTEQQD
EEDEETGTGGADDDDDDDAPPPPPLVPALVSSSPPPSSSNRGSPSANYPQ
PDMGLLKQCYLERLKPYRVSRQKIDLLKNTLKRYLGTHKFHNFSIRMSYR
SGAVQRYIMGVEVSEPVVVMEGGEETSEETGKGEGIEWCSITVVGQAFLL
HQIRKMVAVAIKITRGSATPTLIEDAYEDVMLTLPMAPSDGLFLDKAFFE
QYNNRATQIGLAASLDWEDDSGGATNQKQVPSLSVAVLKERVKRFKEEAI
VGHITKSEGKTLAFTKWLYHGRFKYEKSGGKDVFAARGLTIAEQRSEVPK
KEVMAAKIKEKDEKDGMRRGEEGKEKEDVVIDGGVVEERGGEKGK*

mRNA from alignment at chr19:435186..437960-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G01410.1 ID=NO19G01410.1|Name=NO19G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2775bp|location=Sequence derived from alignment at chr19:435186..437960- (Nannochloropsis oceanica)
ATGGGTAGAGGCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAG
GGGAGGTAGGGGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAG
CCAACAAGCGCAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGT
TGTGCTTATAAGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGG
GTCTTATGCTGCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGT
TGGGGAACAAGAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGAT
TTTCAAGGCATGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCT
GGAAAAGGCCATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGA
ATTTGCAGAAAATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTT
CATGCTGCAGCGCAGATTGTGGGATGTAAGCTGCATGTGAAGATGAAAGA
GGAGGAAGATGAGGGGGGGGAGAAGGTGATGGCAAAAAAGGGTACGGGGG
AGAGAGGCGGAGGAGGTGGAGAGGGAGGGGGAGGGGTGGCGGTTGCAAAG
GAGGAGAAGAAAAAGAAGGAGGAAGAGGGGACTGGAATGGTGAAAGAAGG
AAATATGAGAGATATTTCCATCGCCATGACAACTGCGGACTCGGATACAG
CTGTAGCGACAGAAGCAGTGCAAACAGCAACAGCAACATCTACAACAGTA
GCGCCACCACCACCAGCAGCAGCAGCTTCACCTACCACCCAAGCCTCCTC
CTCCGCCCTTTCTCCCGATGATCTTGCGGACGCTTTCGAACGTACCCGCG
ATTCAATCAACGAAAAACTTCCTCCTTCCATCCGTGTCCACGGTGTATTA
CGTGCAACGCGAGGGTTCAACGCTAAAAATGATTGTACCAAACGTAGATA
TTGCTACTGGCTCCCCACTTTCCTGCTGGCGGATGCTGAGGGTCGGGAAG
AGAGAGAGGGAGGTGTGAAAGGAGGGGTGGGTGCGTGGTTGGATGCTTGT
GCGCAGCAGAAGAAGAAAAAGGAGAGGAAAGTGGTCTTGGATGCCAAGGC
AGAAGGGGAGGAGGGAGTAAAGAAAGAGGGGTTGGAGGTGGAGGAGCAGG
AGGAGGAGCAGGAGGAGGAAAAAGACGGGATAAGTACAGAGCAGCAGGAT
GAAGAAGACGAAGAAACGGGCACTGGCGGGGCAGATGACGACGACGATGA
CGATGCCCCCCCTCCTCCTCCTCTTGTCCCTGCCCTTGTCTCCTCCTCCC
CCCCTCCCTCCTCATCCAACCGGGGAAGTCCCTCCGCGAACTACCCTCAG
CCTGACATGGGCTTGCTGAAACAGTGCTACCTGGAGAGATTGAAGCCTTA
TCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACACTGAAGCGGT
ATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCATGAGCTATCGG
TCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTATCGGAGCCGGT
GGTGGTGATGGAGGGAGGGGAGGAGACAAGTGAAGAGACAGGGAAGGGAG
AAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAGGCGTTTTTGTTG
CATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGGTAAGCAGCTTAGT
TTTTTATTTAGTTCTTTTTGGGTCTATCTTCTATTTATTTGCCTATACAT
ATTTTTATTAATCTCTCTGTATTATACATACAAATTTATTTGTCTTTGAT
TTAACCAATTTATTTATTTCTTAATTTATACATGCACTGCAGCCATGATG
GCAGCTGTGCATGTTCATACTTTCTTCCTTTTAAAATCACAAATAAAAAA
ATAAATGTTTATTCCATACCGAAATATACGCACAGATTACCCGTGGCTCC
GCCACTCCCACCCTTATCGAAGACGCCTACGAGGACGTGATGCTCACCTT
GCCCATGGCCCCGTCCGACGGCCTCTTCCTCGACAAAGCCTTTTTTGAAC
AGTACAACAACCGCGCGACGCAGATCGGCTTGGCTGCGTCCCTGGACTGG
GAAGATGACAGTGGAGGTGGTGAGGAAGGGAGGGAAAGACGGGCGGCAGG
GAAGAGGGGGAGGGAGAGAGAGTGGAAATAAAAAGATAGAATAACTGTCA
ATTAAAACTCACGAGTATTTCTTATTCCCATCCTCCTCTCCTTGCCCTGC
TTCACTAGCCACGAATCAGAAACAAGTACCGTCGTTGTCAGTGGCAGTAC
TGAAGGAACGAGTGAAAAGATTTAAGGAGGAGGCGATTGTCGGTCATATC
ACCAAGAGCGAGGGCAAGGTACGTGCGAGAAAAGAGTGTCTGTGTGTGTG
ACTTTCATTCGCTTGTTCCATTTTTTTCGTGCTGTGTGCGTGCTTGTCTT
TGTTGTAGTTTGCTTATCTTCCTCTCGCTACCAACCCCCATTTTTTGCTT
CCTTCCTCCTTCCCTAGACGTTGGCTTTCACCAAGTGGCTTTATCACGGT
CGTTTTAAGTATGAAAAAAGTGGGGGGAAGGACGTATTTGCCGCGCGTGG
GCTCACGATTGCAGAGCAGCGAAGCGAGGTTCCAAAAAAGGAGGTTATGG
CGGCCAAGATCAAGGAGAAGGATGAGAAGGATGGGATGAGGCGGGGGGAG
GAGGGAAAGGAGAAGGAGGATGTGGTGATTGACGGAGGGGTAGTGGAAGA
GAGGGGAGGTGAAAAGGGCAAGTGA

Coding sequence (CDS) from alignment at chr19:435186..437960-

>NO19G01410.1 ID=NO19G01410.1|Name=NO19G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at chr19:435186..437960- (Nannochloropsis oceanica)
ATGGGTAGAGGCCGCGGTGGTTGGGGAGGAGGAGGACGGGGGAGGGGAAG
GGGAGGTAGGGGACGGGGGAAATGGGGCGATGGTGGTGGTGGTCCAAAAG
CCAACAAGCGCAAAAGTGGAGGATCAGAGGAAGTTGGAGGAGAAGACGGT
TGTGCTTATAAGCATCCTCGATTTAATGATAGCAAAGAACCTCATTCGGG
GTCTTATGCTGCGCAAGTCAGGGAGAATGAAGATGGGCAGGGCATTCAGT
TGGGGAACAAGAAAAAGGTCGCCTTGGTCATTGGGTACTGCGGGACGGAT
TTTCAAGGCATGCAGATGAATCCGGGTGCGGCCTCCATCGAAGCAGAGCT
GGAAAAGGCCATGTTTGAGGCGGGTTGTATTAAAAAAGAAAATTTTGGGA
ATTTGCAGAAAATTGGGTGGTCTCGGGCGGGAAGAACTGATAAGGGTGTT
CATGCTGCAGCGCAGATTGTGGGATGTAAGCTGCATGTGAAGATGAAAGA
GGAGGAAGATGAGGGGGGGGAGAAGGTGATGGCAAAAAAGGGTACGGGGG
AGAGAGGCGGAGGAGGTGGAGAGGGAGGGGGAGGGGTGGCGGTTGCAAAG
GAGGAGAAGAAAAAGAAGGAGGAAGAGGGGACTGGAATGGTGAAAGAAGG
AAATATGAGAGATATTTCCATCGCCATGACAACTGCGGACTCGGATACAG
CTGTAGCGACAGAAGCAGTGCAAACAGCAACAGCAACATCTACAACAGTA
GCGCCACCACCACCAGCAGCAGCAGCTTCACCTACCACCCAAGCCTCCTC
CTCCGCCCTTTCTCCCGATGATCTTGCGGACGCTTTCGAACGTACCCGCG
ATTCAATCAACGAAAAACTTCCTCCTTCCATCCGTGTCCACGGTGTATTA
CGTGCAACGCGAGGGTTCAACGCTAAAAATGATTGTACCAAACGTAGATA
TTGCTACTGGCTCCCCACTTTCCTGCTGGCGGATGCTGAGGGTCGGGAAG
AGAGAGAGGGAGGTGTGAAAGGAGGGGTGGGTGCGTGGTTGGATGCTTGT
GCGCAGCAGAAGAAGAAAAAGGAGAGGAAAGTGGTCTTGGATGCCAAGGC
AGAAGGGGAGGAGGGAGTAAAGAAAGAGGGGTTGGAGGTGGAGGAGCAGG
AGGAGGAGCAGGAGGAGGAAAAAGACGGGATAAGTACAGAGCAGCAGGAT
GAAGAAGACGAAGAAACGGGCACTGGCGGGGCAGATGACGACGACGATGA
CGATGCCCCCCCTCCTCCTCCTCTTGTCCCTGCCCTTGTCTCCTCCTCCC
CCCCTCCCTCCTCATCCAACCGGGGAAGTCCCTCCGCGAACTACCCTCAG
CCTGACATGGGCTTGCTGAAACAGTGCTACCTGGAGAGATTGAAGCCTTA
TCGCGTGAGCCGACAAAAAATAGATTTATTAAAAAATACACTGAAGCGGT
ATCTGGGTACTCACAAATTTCACAACTTCTCGATTCGCATGAGCTATCGG
TCGGGGGCGGTTCAGCGATATATAATGGGGGTGGAGGTATCGGAGCCGGT
GGTGGTGATGGAGGGAGGGGAGGAGACAAGTGAAGAGACAGGGAAGGGAG
AAGGGATAGAGTGGTGCAGCATAACGGTGGTGGGGCAGGCGTTTTTGTTG
CATCAGATTCGGAAGATGGTGGCGGTGGCAATTAAGATTACCCGTGGCTC
CGCCACTCCCACCCTTATCGAAGACGCCTACGAGGACGTGATGCTCACCT
TGCCCATGGCCCCGTCCGACGGCCTCTTCCTCGACAAAGCCTTTTTTGAA
CAGTACAACAACCGCGCGACGCAGATCGGCTTGGCTGCGTCCCTGGACTG
GGAAGATGACAGTGGAGGTGCCACGAATCAGAAACAAGTACCGTCGTTGT
CAGTGGCAGTACTGAAGGAACGAGTGAAAAGATTTAAGGAGGAGGCGATT
GTCGGTCATATCACCAAGAGCGAGGGCAAGACGTTGGCTTTCACCAAGTG
GCTTTATCACGGTCGTTTTAAGTATGAAAAAAGTGGGGGGAAGGACGTAT
TTGCCGCGCGTGGGCTCACGATTGCAGAGCAGCGAAGCGAGGTTCCAAAA
AAGGAGGTTATGGCGGCCAAGATCAAGGAGAAGGATGAGAAGGATGGGAT
GAGGCGGGGGGAGGAGGGAAAGGAGAAGGAGGATGTGGTGATTGACGGAG
GGGTAGTGGAAGAGAGGGGAGGTGAAAAGGGCAAGTGA

Synonyms

Publications