NO19G01380, NO19G01380 (gene) Nannochloropsis oceanica

Overview
NameNO19G01380
Unique NameNO19G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr19:425948..427225 -

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Properties
Property NameValue
DescriptionEKC/KEOPS complex subunit TPRKB
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:425948..427225 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036504CGI121/TPRKB_sf
IPR013926CGI121/TPRKB
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_017552503.1 (PREDICTED: EKC/KEOPS complex subunit TPRKB [Pygocentrus nattereri])

HSP 1 Score: 75.9 bits (185), Expect = 2.100e-10
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 0
Query:   40 LFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            LFP+ H++  LL+ DV N +E+R   ++G +P  ALI PSMVL  F  L AA+ A+     G M+ ++L++E+++SLSPT NISEAF+ FG
Sbjct:    9 LFPE-HSVTQLLFSDVRNCAELRKMAVEGQIPG-ALINPSMVLDPFQTLAAANKAVHLQKNGKMKTRSLYSEIIFSLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: EJW85547.1 (hypothetical protein WUBG_03543 [Wuchereria bancrofti])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0
Query:   43 QNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            Q     + L+ DV NASE++ AL+DG++ + ALIKP +VL  F +L AA+ A+ Q A   +  +TLHAEL+YSLSP  NI E+   FG
Sbjct:   20 QRRFFRVCLFTDVKNASELKQALIDGSI-DAALIKPELVLEVFTLLAAANKAVHQAAHNRLSTRTLHAELIYSLSPDRNILESLLTFG 106          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_004084365.1 (EKC/KEOPS complex subunit TPRKB [Oryzias latipes])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 0
Query:   40 LFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            LFP+ H    +L++DV NA+E+R   ++G +   ALI P+M+LS F  LLAA+ A+   + G M+ ++L++E++++LSPT NISEAF+ FG
Sbjct:    9 LFPEQHVTQ-MLFKDVNNAAELRQDAVEGNI-HAALINPTMLLSPFQALLAANKAIHSQSIGKMKTRSLNSEIIFNLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_013786264.1 (EKC/KEOPS complex subunit Tprkb-like [Limulus polyphemus])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 49/156 (31.41%), Postives = 89/156 (57.05%), Query Frame = 0
Query:   49 ILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFGXXXXXXXXXXXXXXXXXXAFIDSSKEAIREKIIPLVQGKAVAAEKVMAYLNARPLSKERIERFRKVFKIEEGKR 205
            + L+ DV N+ E+R  L++G+L + ++IKPS+VL +F +L+AA+ A+L   QGT++ K +++E+LY+LSP+ NI+E+ + FG                    ID +K      I  +V+GK  + + +  + N         +  +KV+KI+E ++
Sbjct:   17 LTLFSDVTNSKELRQKLVEGSL-QCSIIKPSLVLDTFQLLVAANKAVLSQQQGTLKTKGIYSEILYNLSPSKNITESLKTFGIGENDTSILVLVLND-----IDGTKV---NSISSVVKGKLASLDTLNMHTNE--------QEIKKVYKIKEAEQ 155          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_021419065.1 (EKC/KEOPS complex subunit TPRKB [Oncorhynchus mykiss] >CDQ85304.1 unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   37 ETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            E  LFP + T+  LL++DV NA+E+R   ++G +   ALI PSM+++ F +L+AA+ A+   + G M+ ++L++E++Y+LSPT NISEAF+ FG
Sbjct:    6 ELELFP-DRTVTQLLFKDVKNAAELRKNAMEGKI-NGALINPSMIVNPFQVLVAANKAVHLHSTGKMKTRSLYSEIIYNLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_016384513.1 (PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/91 (46.15%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   40 LFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            LFP+ +T+  LL++DV NA+E+R   ++G + + ALI PSMV+ +F IL+AA+ A+     G M+ ++L++E++++LSPT NISEAF+ FG
Sbjct:    9 LFPE-YTVTQLLFKDVKNATELRKMAVNGEI-KGALINPSMVVDAFQILVAANKAVHLHKSGKMKTRSLYSEIIFNLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_016392021.1 (PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/91 (46.15%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   40 LFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            LFP+ +T+  LL++DV NA+E+R   ++G + + ALI PS+V+ +F IL+AA+ A+     G M+ ++L++E++Y+LSPT NISEAF+ FG
Sbjct:    9 LFPE-YTVIQLLFKDVKNATELRKMAVNGEI-KGALINPSLVVDAFQILVAANKAVHLHKNGKMKTRSLYSEIIYNLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_020307729.1 (EKC/KEOPS complex subunit TPRKB [Oncorhynchus kisutch])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   37 ETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            E  LFP + T+  LL++DV NA+E+R   ++G +   ALI PSM+++ F +L+AA+ A+   + G M+ ++L++E++Y+LSPT NISEAF+ FG
Sbjct:    6 ELELFP-DRTVTQLLFKDVKNAAELRKNAMEGKI-NGALINPSMIVNPFQVLVAANKAVHLHSTGKMKTRSLYSEIIYNLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_023825314.1 (EKC/KEOPS complex subunit Tprkb [Salvelinus alpinus])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   37 ETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            E  LFP + T+  LL++DV NA+E+R   ++G +   ALI PSM+++ F +L+AA+ A+   + G M+ ++L++E++Y+LSPT NISEAF+ FG
Sbjct:    6 ELELFP-DRTVTQLLFKDVKNAAELRKNAMEGKI-NGALINPSMIVNPFQVLVAANKAVHLHSAGKMKTRSLYSEIIYNLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_024232610.1 (EKC/KEOPS complex subunit Tprkb-like [Oncorhynchus tshawytscha])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   37 ETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            E  LFP + T+  LL++DV NA+E+R   ++G +   ALI PSM+++ F +L+AA+ A+   + G M+ ++L++E++Y+LSPT NISEAF+ FG
Sbjct:   21 ELELFP-DRTVTQLLFKDVKNAAELRKNAMEGKI-NGALINPSMIVNPFQVLVAANKAVHLHSTGKMKTRSLYSEIIYNLSPTNNISEAFKRFG 112          
The following BLAST results are available for this feature:
BLAST of NO19G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_017552503.12.100e-1047.25PREDICTED: EKC/KEOPS complex subunit TPRKB [Pygoce... [more]
EJW85547.12.700e-1047.73hypothetical protein WUBG_03543 [Wuchereria bancro... [more]
XP_004084365.12.700e-1045.05EKC/KEOPS complex subunit TPRKB [Oryzias latipes][more]
XP_013786264.12.700e-1031.41EKC/KEOPS complex subunit Tprkb-like [Limulus poly... [more]
XP_021419065.13.600e-1044.68EKC/KEOPS complex subunit TPRKB [Oncorhynchus myki... [more]
XP_016384513.13.600e-1046.15PREDICTED: EKC/KEOPS complex subunit Tprkb-like [S... [more]
XP_016392021.13.600e-1046.15PREDICTED: EKC/KEOPS complex subunit Tprkb-like [S... [more]
XP_020307729.13.600e-1044.68EKC/KEOPS complex subunit TPRKB [Oncorhynchus kisu... [more]
XP_023825314.13.600e-1044.68EKC/KEOPS complex subunit Tprkb [Salvelinus alpinu... [more]
XP_024232610.13.600e-1044.68EKC/KEOPS complex subunit Tprkb-like [Oncorhynchus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004472NSK004472Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01380.1NO19G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672812gene_7532Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100165g7gene6820Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01380.1NO19G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01380 ID=NO19G01380|Name=NO19G01380|organism=Nannochloropsis oceanica|type=gene|length=1278bp
CAGAGAGTTCCGAAGCCCACTGCCGACCTCCTCTTCATCCTCCCCACTAC
CATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCTGCAG
ACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGAGGAT
ACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGgtacgtaggtc
gaaaaagagagacatttgcgcagcggcggtgtgtggggatcaggaaagca
ggaacgaagacacggtaccaccccgtcggcgtttcgttatgtcaagagaa
tggacataagatcaattatacgcaaaacaaagcgcctgagtgcagacgtc
accgcacattcaaattaatttacccaaacctcacctcttctttcactctc
acagCTCCACATTCTCCTCTACGAGGACGTGGTCAATGCTTCGGAGATTC
GCACCGCACTGCTCGACGGTACCCTGCCTGAATTCGCTCTCATTAAACCT
AGCATGGTTCTATCCTCCTTCCACATCCTCCTCGCCGCCTCCACCGCCCT
CCTCCAACTAGCCCAGGGCACCATGCGTTTGAAGACTCTCCACGCCGAGC
TCCTGTATTCTCTCTCCCCCACCACTAATATCTCAGAAGCCTTCCGTGTT
TTTGGTGGTGGTGCTTCTGCTGACAGCAGCAGTAGCAACTCCTCTACTCC
TCTCCTCTTAGCGTTTATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAA
TCATCCCTCTCGTGCAGGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCT
TATTTGAACGCACGGCCCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAA
AGTGTTCAAGATAGAAGAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGG
GAGGGAGGAGGAAGCAGAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGA
GGAGGGGCAGGAAGAAGGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCA
TGCAGTCGTGTCCAGGATAGCGGCGAAGCGTCTTCTGTGATTTCAAGAAG
AGATGTATTACGTTCCCTTCCTCCCTTCCTCCCTCCCTGCCTCCGAGGCA
AGGGAGCGACCTGTCTCCTGTAAAGAGATAACGGCGATTGAGAACTGCTG
ATAGTTTGGTCCCAGACAATCGAATAGAAGTATTTGTTTGAAAATTTAAG
GAATGAAAGTAAAATGTGAAAGGTGAAATATTTGACTGGCAAAAGGCGCG
TCTAATGCCTCCAGTATTCACAGGCCCC
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protein sequence of NO19G01380.1

>NO19G01380.1-protein ID=NO19G01380.1-protein|Name=NO19G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTPPPSPTPSPCFPAADHNQPREDVQINPDDEDTIYETVLFPQNHTLHIL
LYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQ
GTMRLKTLHAELLYSLSPTTNISEAFRVFGGGASADSSSSNSSTPLLLAF
IDSSKEAIREKIIPLVQGKAVAAEKVMAYLNARPLSKERIERFRKVFKIE
EGKREGGKGGGGGRRKQKGSESIVVEGGGGAGRRAGRDEAEELEHAVVSR
IAAKRLL*
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Synonyms
Publications