NO19G01380.1, NO19G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01380.1
Unique NameNO19G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1063
Alignment locationchr19:425948..427225 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:425948..427225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01380.1 vs.
Match: EWM23636.1 (tp53rk-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 3.800e-28
Identity = 69/115 (60.00%), Postives = 86/115 (74.78%), Query Frame = 0 
Query:   32 EDTIYETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFGGGASADSSSSNSSTPL 147
            E  +++T LFP+ HTL +LL++DV NAS +R  LL G  P+FALI P M+ SSFH+LLAAS ALL   QGTMR+KTLHAELLYSLSPTT+ISEAFR+FGGG        +++  L
Sbjct:   34 ESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSL 148
The following BLAST results are available for this feature:
BLAST of NO19G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23636.13.800e-2860.00tp53rk-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01380NO19G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01380.1NO19G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01380.1.cds1NO19G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01380.1.cds2NO19G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01380.1 ID=NO19G01380.1|Name=NO19G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
CAGAGAGTTCCGAAGCCCACTGCCGACCTCCTCTTCATCCTCCCCACTAC
CATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCTGCAG
ACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGAGGAT
ACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGCTCCACATTCT
CCTCTACGAGGACGTGGTCAATGCTTCGGAGATTCGCACCGCACTGCTCG
ACGGTACCCTGCCTGAATTCGCTCTCATTAAACCTAGCATGGTTCTATCC
TCCTTCCACATCCTCCTCGCCGCCTCCACCGCCCTCCTCCAACTAGCCCA
GGGCACCATGCGTTTGAAGACTCTCCACGCCGAGCTCCTGTATTCTCTCT
CCCCCACCACTAATATCTCAGAAGCCTTCCGTGTTTTTGGTGGTGGTGCT
TCTGCTGACAGCAGCAGTAGCAACTCCTCTACTCCTCTCCTCTTAGCGTT
TATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAATCATCCCTCTCGTGC
AGGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCTTATTTGAACGCACGG
CCCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAAAGTGTTCAAGATAGA
AGAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGGGAGGGAGGAGGAAGC
AGAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGAGGAGGGGCAGGAAGA
AGGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCATGCAGTCGTGTCCAG
GATAGCGGCGAAGCGTCTTCTGTGATTTCAAGAAGAGATGTATTACGTTC
CCTTCCTCCCTTCCTCCCTCCCTGCCTCCGAGGCAAGGGAGCGACCTGTC
TCCTGTAAAGAGATAACGGCGATTGAGAACTGCTGATAGTTTGGTCCCAG
ACAATCGAATAGAAGTATTTGTTTGAAAATTTAAGGAATGAAAGTAAAAT
GTGAAAGGTGAAATATTTGACTGGCAAAAGGCGCGTCTAATGCCTCCAGT
ATTCACAGGCCCC
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protein sequence of NO19G01380.1

>NO19G01380.1-protein ID=NO19G01380.1-protein|Name=NO19G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTPPPSPTPSPCFPAADHNQPREDVQINPDDEDTIYETVLFPQNHTLHIL
LYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQ
GTMRLKTLHAELLYSLSPTTNISEAFRVFGGGASADSSSSNSSTPLLLAF
IDSSKEAIREKIIPLVQGKAVAAEKVMAYLNARPLSKERIERFRKVFKIE
EGKREGGKGGGGGRRKQKGSESIVVEGGGGAGRRAGRDEAEELEHAVVSR
IAAKRLL*
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mRNA from alignment at chr19:425948..427225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01380.1 ID=NO19G01380.1|Name=NO19G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at chr19:425948..427225- (Nannochloropsis oceanica)
CAGAGAGTTCCGAAGCCCACTGCCGACCTCCTCTTCATCCTCCCCACTAC
CATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCTGCAG
ACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGAGGAT
ACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGGTACGTAGGTC
GAAAAAGAGAGACATTTGCGCAGCGGCGGTGTGTGGGGATCAGGAAAGCA
GGAACGAAGACACGGTACCACCCCGTCGGCGTTTCGTTATGTCAAGAGAA
TGGACATAAGATCAATTATACGCAAAACAAAGCGCCTGAGTGCAGACGTC
ACCGCACATTCAAATTAATTTACCCAAACCTCACCTCTTCTTTCACTCTC
ACAGCTCCACATTCTCCTCTACGAGGACGTGGTCAATGCTTCGGAGATTC
GCACCGCACTGCTCGACGGTACCCTGCCTGAATTCGCTCTCATTAAACCT
AGCATGGTTCTATCCTCCTTCCACATCCTCCTCGCCGCCTCCACCGCCCT
CCTCCAACTAGCCCAGGGCACCATGCGTTTGAAGACTCTCCACGCCGAGC
TCCTGTATTCTCTCTCCCCCACCACTAATATCTCAGAAGCCTTCCGTGTT
TTTGGTGGTGGTGCTTCTGCTGACAGCAGCAGTAGCAACTCCTCTACTCC
TCTCCTCTTAGCGTTTATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAA
TCATCCCTCTCGTGCAGGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCT
TATTTGAACGCACGGCCCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAA
AGTGTTCAAGATAGAAGAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGG
GAGGGAGGAGGAAGCAGAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGA
GGAGGGGCAGGAAGAAGGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCA
TGCAGTCGTGTCCAGGATAGCGGCGAAGCGTCTTCTGTGATTTCAAGAAG
AGATGTATTACGTTCCCTTCCTCCCTTCCTCCCTCCCTGCCTCCGAGGCA
AGGGAGCGACCTGTCTCCTGTAAAGAGATAACGGCGATTGAGAACTGCTG
ATAGTTTGGTCCCAGACAATCGAATAGAAGTATTTGTTTGAAAATTTAAG
GAATGAAAGTAAAATGTGAAAGGTGAAATATTTGACTGGCAAAAGGCGCG
TCTAATGCCTCCAGTATTCACAGGCCCC
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Coding sequence (CDS) from alignment at chr19:425948..427225-

>NO19G01380.1 ID=NO19G01380.1|Name=NO19G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr19:425948..427225- (Nannochloropsis oceanica)
ATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCTGCAGA
CCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGAGGATA
CCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGCTCCACATTCTC
CTCTACGAGGACGTGGTCAATGCTTCGGAGATTCGCACCGCACTGCTCGA
CGGTACCCTGCCTGAATTCGCTCTCATTAAACCTAGCATGGTTCTATCCT
CCTTCCACATCCTCCTCGCCGCCTCCACCGCCCTCCTCCAACTAGCCCAG
GGCACCATGCGTTTGAAGACTCTCCACGCCGAGCTCCTGTATTCTCTCTC
CCCCACCACTAATATCTCAGAAGCCTTCCGTGTTTTTGGTGGTGGTGCTT
CTGCTGACAGCAGCAGTAGCAACTCCTCTACTCCTCTCCTCTTAGCGTTT
ATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAATCATCCCTCTCGTGCA
GGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCTTATTTGAACGCACGGC
CCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAAAGTGTTCAAGATAGAA
GAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGGGAGGGAGGAGGAAGCA
GAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGAGGAGGGGCAGGAAGAA
GGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCATGCAGTCGTGTCCAGG
ATAGCGGCGAAGCGTCTTCTGTGA
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Synonyms
Publications