NO19G01380, NO19G01380 (gene) Nannochloropsis oceanica

Overview
NameNO19G01380
Unique NameNO19G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr19:425948..427225 -

Link to JBrowse

Properties
Property NameValue
DescriptionEKC/KEOPS complex subunit TPRKB
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:425948..427225 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036504CGI121/TPRKB_sf
IPR013926CGI121/TPRKB
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO19G01380 vs. NCBI_GenBank
Match: EWM23636.1 (tp53rk-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 132.1 bits (331), Expect = 2.500e-27
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0
Query:   32 EDTIYETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            E  +++T LFP+ HTL +LL++DV NAS +R  LL G  P+FALI P M+ SSFH+LLAAS ALL   QGTMR+KTLHAELLYSLSPTT+ISEAFR+FG
Sbjct:   34 ESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_018408016.1 (PREDICTED: EKC/KEOPS complex subunit TPRKB isoform X1 [Nanorana parkeri])

HSP 1 Score: 77.4 bits (189), Expect = 7.200e-11
Identity = 41/95 (43.16%), Postives = 67/95 (70.53%), Query Frame = 0
Query:   36 YETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            Y   LFP+ H + +LL++DV NAS +R   +DGT+ + AL+ P+M++    +L+AA+ A+     G M+ ++L++E++++LSPT NISEAFR FG
Sbjct:    5 YHLELFPE-HKVTLLLFKDVKNASGLRKKAIDGTI-DGALLNPAMIVDPLQVLVAANKAIHLHLMGKMKTRSLNSEIIFNLSPTNNISEAFRKFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_024738393.1 (CGI-121-domain-containing protein [Meliniomyces bicolor E] >PMD61489.1 CGI-121-domain-containing protein [Meliniomyces bicolor E])

HSP 1 Score: 77.4 bits (189), Expect = 7.200e-11
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   42 PQNHTLHILLYEDVVNASEIRTALLDG-TLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            P +H +HI LY D+ NAS ++  LLDG T  E+ALI   +V+S  H L AA  A+  L +  +R + +H+E+++SLSP  NI+E+FR FG
Sbjct:   13 PYSHEIHIALYRDITNASFLQQQLLDGNTNFEYALIDAGVVVSKIHALAAAYRAVSDLLENRLRSRNVHSEIVFSLSPNNNIAESFRRFG 102          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_016343366.1 (PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Sinocyclocheilus anshuiensis])

HSP 1 Score: 77.0 bits (188), Expect = 9.400e-11
Identity = 43/91 (47.25%), Postives = 69/91 (75.82%), Query Frame = 0
Query:   40 LFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            LFP+ +T+  LL++DV NA+E+R   ++G + + ALI PSMV+ +F IL+AA+ A+     G M+ ++L++E+++SLSPT+NISEAF+ FG
Sbjct:    9 LFPE-YTVTQLLFKDVKNATELRKMAVNGEI-KGALINPSMVVDAFQILVAANKAIHLHKSGKMKTRSLYSEIIFSLSPTSNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_020606738.1 (EKC/KEOPS complex subunit Tprkb-like [Orbicella faveolata])

HSP 1 Score: 77.0 bits (188), Expect = 9.400e-11
Identity = 37/87 (42.53%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   44 NHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            N+T+++ L+ DV N+SE+R  ++ G L E AL+   MV   FH+++A   A     QG M+ +TLH+E++++LSP+TNI+E+F+ FG
Sbjct:   29 NYTMNLALFTDVTNSSELRQLIVQGKL-EAALLNACMVTDPFHVVIAGHKAFQLFQQGKMKTRTLHSEIIFNLSPSTNINESFKKFG 114          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_001896423.1 (1810034M08Rik protein [Brugia malayi])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 0
Query:   43 QNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            Q     + L+ DV NASE+R AL+DG++ + ALIKP +VL  F +L AA+ A+ Q A   +  +TLHAEL+YSLSP  NI E+   FG
Sbjct:   20 QRRFFRVCLFTDVKNASELRQALVDGSI-DAALIKPELVLEVFTLLAAANKAVHQAAHNRLSARTLHAELIYSLSPDRNILESLLTFG 106          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_003977580.1 (PREDICTED: EKC/KEOPS complex subunit TPRKB, partial [Takifugu rubripes])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 42/95 (44.21%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   36 YETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            ++  LFP +H +  +L++DV NA+E+R + + G +   ALIKP+MV++SF +L+AA+ A+     G M+ ++L++E+++SLSPT NISEAF+ FG
Sbjct:    5 HQLELFP-DHRVTQVLFKDVKNAAELRQSAVAGKI-NAALIKPAMVVNSFQVLVAANKAVHLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFG 97          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: NP_001140002.1 (EKC/KEOPS complex subunit TPRKB [Salmo salar] >ACM09187.1 TP53RK-binding protein [Salmo salar])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 43/94 (45.74%), Postives = 68/94 (72.34%), Query Frame = 0
Query:   37 ETVLFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            E  LFP + T+  LL++DV NA+E+R   ++G +   ALI PSM++S F +L+AA+ A+   + G M+ ++L++E++Y+LSPT NISEAF+ FG
Sbjct:   21 ELELFP-DRTVTQLLFKDVKNAAELRKNAMEGKI-NGALINPSMIVSPFQVLVAANKAVHLHSTGKMKTRSLYSEIIYNLSPTNNISEAFKRFG 112          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: CRZ22565.1 (Bm6162 [Brugia malayi])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 0
Query:   43 QNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            Q     + L+ DV NASE+R AL+DG++ + ALIKP +VL  F +L AA+ A+ Q A   +  +TLHAEL+YSLSP  NI E+   FG
Sbjct:   32 QRRFFRVCLFTDVKNASELRQALVDGSI-DAALIKPELVLEVFTLLAAANKAVHQAAHNRLSARTLHAELIYSLSPDRNILESLLTFG 118          
BLAST of NO19G01380 vs. NCBI_GenBank
Match: XP_016147271.1 (PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Sinocyclocheilus grahami])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 43/91 (47.25%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   40 LFPQNHTLHILLYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQGTMRLKTLHAELLYSLSPTTNISEAFRVFG 131
            LFP+ +T+  LL++DV NA+E+R   ++G + + ALI PSMV+ +F IL+AA+ A+     G M+ ++L++E+++SLSPT NISEAF+ FG
Sbjct:    9 LFPE-YTVTQLLFKDVKNATELRKMAVNGEI-KGALINPSMVVDAFQILVAANKAVHLHKSGKMKTRSLYSEIIFSLSPTNNISEAFKRFG 97          
The following BLAST results are available for this feature:
BLAST of NO19G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23636.12.500e-2766.67tp53rk-binding protein [Nannochloropsis gaditana][more]
XP_018408016.17.200e-1143.16PREDICTED: EKC/KEOPS complex subunit TPRKB isoform... [more]
XP_024738393.17.200e-1145.56CGI-121-domain-containing protein [Meliniomyces bi... [more]
XP_016343366.19.400e-1147.25PREDICTED: EKC/KEOPS complex subunit Tprkb-like [S... [more]
XP_020606738.19.400e-1142.53EKC/KEOPS complex subunit Tprkb-like [Orbicella fa... [more]
XP_001896423.11.600e-1048.861810034M08Rik protein [Brugia malayi][more]
XP_003977580.11.600e-1044.21PREDICTED: EKC/KEOPS complex subunit TPRKB, partia... [more]
NP_001140002.11.600e-1045.74EKC/KEOPS complex subunit TPRKB [Salmo salar] >ACM... [more]
CRZ22565.11.600e-1048.86Bm6162 [Brugia malayi][more]
XP_016147271.11.600e-1047.25PREDICTED: EKC/KEOPS complex subunit Tprkb-like [S... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004472NSK004472Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01380.1NO19G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672812gene_7532Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100165g7gene6820Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01380.1NO19G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01380 ID=NO19G01380|Name=NO19G01380|organism=Nannochloropsis oceanica|type=gene|length=1278bp
CAGAGAGTTCCGAAGCCCACTGCCGACCTCCTCTTCATCCTCCCCACTAC
CATGACGCCCCCTCCTTCCCCTACTCCTTCACCCTGTTTTCCTGCTGCAG
ACCACAACCAACCTCGAGAAGACGTGCAAATTAATCCTGATGATGAGGAT
ACCATCTATGAGACGGTGCTTTTTCCGCAGAACCACACGgtacgtaggtc
gaaaaagagagacatttgcgcagcggcggtgtgtggggatcaggaaagca
ggaacgaagacacggtaccaccccgtcggcgtttcgttatgtcaagagaa
tggacataagatcaattatacgcaaaacaaagcgcctgagtgcagacgtc
accgcacattcaaattaatttacccaaacctcacctcttctttcactctc
acagCTCCACATTCTCCTCTACGAGGACGTGGTCAATGCTTCGGAGATTC
GCACCGCACTGCTCGACGGTACCCTGCCTGAATTCGCTCTCATTAAACCT
AGCATGGTTCTATCCTCCTTCCACATCCTCCTCGCCGCCTCCACCGCCCT
CCTCCAACTAGCCCAGGGCACCATGCGTTTGAAGACTCTCCACGCCGAGC
TCCTGTATTCTCTCTCCCCCACCACTAATATCTCAGAAGCCTTCCGTGTT
TTTGGTGGTGGTGCTTCTGCTGACAGCAGCAGTAGCAACTCCTCTACTCC
TCTCCTCTTAGCGTTTATTGATTCTTCCAAGGAAGCAATAAGAGAGAAAA
TCATCCCTCTCGTGCAGGGCAAGGCAGTAGCAGCGGAAAAAGTGATGGCT
TATTTGAACGCACGGCCCTTGTCGAAAGAGCGGATAGAGAGGTTTCGAAA
AGTGTTCAAGATAGAAGAGGGAAAGAGGGAAGGAGGGAAGGGTGGAGGGG
GAGGGAGGAGGAAGCAGAAAGGAAGTGAGAGTATTGTGGTGGAGGGAGGA
GGAGGGGCAGGAAGAAGGGCAGGGAGGGATGAGGCGGAGGAGTTGGAGCA
TGCAGTCGTGTCCAGGATAGCGGCGAAGCGTCTTCTGTGATTTCAAGAAG
AGATGTATTACGTTCCCTTCCTCCCTTCCTCCCTCCCTGCCTCCGAGGCA
AGGGAGCGACCTGTCTCCTGTAAAGAGATAACGGCGATTGAGAACTGCTG
ATAGTTTGGTCCCAGACAATCGAATAGAAGTATTTGTTTGAAAATTTAAG
GAATGAAAGTAAAATGTGAAAGGTGAAATATTTGACTGGCAAAAGGCGCG
TCTAATGCCTCCAGTATTCACAGGCCCC
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protein sequence of NO19G01380.1

>NO19G01380.1-protein ID=NO19G01380.1-protein|Name=NO19G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTPPPSPTPSPCFPAADHNQPREDVQINPDDEDTIYETVLFPQNHTLHIL
LYEDVVNASEIRTALLDGTLPEFALIKPSMVLSSFHILLAASTALLQLAQ
GTMRLKTLHAELLYSLSPTTNISEAFRVFGGGASADSSSSNSSTPLLLAF
IDSSKEAIREKIIPLVQGKAVAAEKVMAYLNARPLSKERIERFRKVFKIE
EGKREGGKGGGGGRRKQKGSESIVVEGGGGAGRRAGRDEAEELEHAVVSR
IAAKRLL*
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Synonyms
Publications