NO19G01290, NO19G01290 (gene) Nannochloropsis oceanica

Overview
NameNO19G01290
Unique NameNO19G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3877
Alignment locationchr19:404992..408868 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA repair protein Sae2/CtIP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:404992..408868 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004519endonuclease activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR033316RBBP8-like
IPR013882Com1/Ctip_fam
Homology
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_002286866.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96507.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-9
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 0 
Query:  440 QVVRNREARMALPAYDCPECSGFLDAI-----GGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            +VVR ++AR ALPA++C  C  F +A+       +++R+++L +CSRHR +H P  TP  +WE+SFADS
Sbjct:  849 EVVRGKDARRALPAHECEHCIKFNNAVEAQTGASVLNREQMLHECSRHRASHAPESTPPDYWEMSFADS 917
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: CCA18306.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA18421.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.2 bits (178), Expect = 2.700e-9
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIG------------GLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNR+ R  LPA+DC +CS + DAI              +VD  ++  KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  225 VEVVRNRDVRATLPAHDCRDCSKYYDAIAKMDFPMKSSDAYDMVDSHKM--KCSRHRARFEPYQTPDDFWRLSFPDS 299
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_008869865.1 (hypothetical protein H310_06534 [Aphanomyces invadans] >ETW02017.1 hypothetical protein H310_06534 [Aphanomyces invadans])

HSP 1 Score: 73.2 bits (178), Expect = 2.700e-9
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            I+VVRNR+ARMALP + C EC+ +  A+G   +  +    CSRHR   +PY TPE FW LSF DS
Sbjct:  196 IEVVRNRDARMALPGHACEECAQYYAALGDEFEGHQF--ACSRHRAKWEPYATPEDFWRLSFPDS 258
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_008612821.1 (hypothetical protein SDRG_08705 [Saprolegnia diclina VS20] >EQC33598.1 hypothetical protein SDRG_08705 [Saprolegnia diclina VS20])

HSP 1 Score: 72.4 bits (176), Expect = 4.500e-9
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:  434 KPHRSIQVVRNREARMALPAYDCPECSGFLDAIG-GLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            KP+  I+VVR R+ R ALP + C +C+ + DA+G G   ++++   CSRHR   +PY TPE FW L+F DS
Sbjct:  197 KPYGYIEVVRKRDERAALPGHACLQCTEYFDALGEGFEGQRDL---CSRHRARFEPYSTPEDFWRLTFPDS 264
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: CBJ27290.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.6 bits (174), Expect = 7.800e-9
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 0 
Query:  440 QVVRNREARMALPAYDCPECSGFLDAIGGLV-DRKEVLKKCSRHRHAH---KPYETPEGFWELSFADS 504
            +VVR+R  R  +  +DC  C+ +L A+GG   +R+ +L  CSRH++     +P ETP+GFW+LSFADS
Sbjct:  836 EVVRDRSKRAMMKGHDCEHCAAYLAAVGGSPGEREAILNMCSRHKYTEANGRPAETPDGFWDLSFADS 903
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_009842685.1 (hypothetical protein H257_16063 [Aphanomyces astaci] >ETV67827.1 hypothetical protein H257_16063 [Aphanomyces astaci])

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-8
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 0 
Query:  432 PLKPHRSIQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            P    + I+VVR R+ RMALP + C EC+ +  A+G   D  +    CSRHR   +PY TPE FW LSF DS
Sbjct:  292 PPAAFKYIEVVRKRDERMALPGHACDECARYYAALGDEFDGDQF--ACSRHRAKWEPYATPEDFWRLSFPDS 361
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_012200067.1 (hypothetical protein SPRG_05432 [Saprolegnia parasitica CBS 223.65] >KDO29190.1 hypothetical protein SPRG_05432 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.1 bits (170), Expect = 2.300e-8
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:  434 KPHRSIQVVRNREARMALPAYDCPECSGFLDAIG-GLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            KP+  I+VVR R+ R ALP + C +C+ +  A+G G   ++++   CSRHR   +PY TPE FW L+F DS
Sbjct:  451 KPYGYIEVVRKRDERAALPGHACSQCAEYFAALGEGFEGQRDL---CSRHRARFEPYSTPEDFWRLTFPDS 518
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_004340908.1 (hypothetical protein ACA1_167100 [Acanthamoeba castellanii str. Neff] >ELR18850.1 hypothetical protein ACA1_167100 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 69.3 bits (168), Expect = 3.800e-8
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAI--GGL-VDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVR ++ R  LP ++C EC+ F DAI  GGL  DRK  +  CSRHR A+   +TP  FW+LSF ++
Sbjct:  378 VEVVRKKDERAVLPGHECEECAKFYDAIREGGLDFDRKLFVNNCSRHRSAYAAPDTPPHFWDLSFPET 445
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_635231.1 (hypothetical protein DDB_G0291466 [Dictyostelium discoideum AX4] >EAL61717.1 hypothetical protein DDB_G0291466 [Dictyostelium discoideum AX4])

HSP 1 Score: 68.2 bits (165), Expect = 8.600e-8
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0 
Query:  440 QVVRNREARMALPAYDCPECSGFLDAIGGLVD--RKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            +V+R +E R  L  +DC  C  F DA+ G  +  +K++L +CSRHRH+ +P  TP GFW   F DS
Sbjct:  370 EVIRGKEDREKLQGFDCAHCKEFYDAVLGDDESMKKQMLDQCSRHRHSDEPPSTPPGFWNFGFPDS 435
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_003295184.1 (hypothetical protein DICPUDRAFT_160384 [Dictyostelium purpureum] >EGC28291.1 hypothetical protein DICPUDRAFT_160384 [Dictyostelium purpureum])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0 
Query:  440 QVVRNREARMALPAYDCPECSGFLDAIGGLVD--RKEVLKKCSRHRHAHKPYETPEGFWELSF 501
            +V+RN+E R  L  +DC  C  F DA+ G  +  +K++L +CSRHRH  +P  TP GFW+  F
Sbjct:  298 EVIRNQEEREKLQGFDCAHCKEFYDAVLGDDESKKKQMLNQCSRHRHNDEPPSTPPGFWDFEF 360
The following BLAST results are available for this feature:
BLAST of NO19G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002286866.12.000e-944.93predicted protein [Thalassiosira pseudonana CCMP13... [more]
CCA18306.12.700e-945.45conserved hypothetical protein [Albugo laibachii N... [more]
XP_008869865.12.700e-952.31hypothetical protein H310_06534 [Aphanomyces invad... [more]
XP_008612821.14.500e-946.48hypothetical protein SDRG_08705 [Saprolegnia dicli... [more]
CBJ27290.17.800e-945.59conserved unknown protein [Ectocarpus siliculosus][more]
XP_009842685.11.300e-847.22hypothetical protein H257_16063 [Aphanomyces astac... [more]
XP_012200067.12.300e-845.07hypothetical protein SPRG_05432 [Saprolegnia paras... [more]
XP_004340908.13.800e-847.06hypothetical protein ACA1_167100 [Acanthamoeba cas... [more]
XP_635231.18.600e-843.94hypothetical protein DDB_G0291466 [Dictyostelium d... [more]
XP_003295184.12.500e-744.44hypothetical protein DICPUDRAFT_160384 [Dictyostel... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01290.1NO19G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01290.1NO19G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01290 ID=NO19G01290|Name=NO19G01290|organism=Nannochloropsis oceanica|type=gene|length=3877bp
GGGGAGGGGAAGGGGTAGAGAGAGAGGGGGAGAGAGAGTGAGGCATCCAA
AAGATATGCGAAGTAGATTTCGATAAGTGGGCATATGTGCCTTCCTGTCA
TTTTTATATGAACGCGCATTTCTGCATTTCTTCCTTCTTTTATCTTCTCT
CTTCTGTCCTCTTCTGTCTACTTTCTTCTTTCCTTTGGGCGTCGTTCTTT
CGTCCGGATTCCCGTCACAGTCCTTGGCTCCTCTTCTCTCTTCCTTCACT
GTTTTACAGTCGTGAAAAAGACGCAGATTTTAAATCAAACGTGGCGCCTC
TAAATTTATGGAAGGACGGGCAATAAAACACACCCCATCTCCCTTTCCGC
CGCGCGAATTCGCAGCTGGGTGCCAAGCAGTGAACCGCAACGTTCATTTT
CTTCGGTCAATTTGCCTCCTCATCTTCCTCTTCCTCCTCCTCGTCGTCTT
CCTCCCCCATCATCTCGGAAGGTGCCTTGGCATCCTCCTGACTTGCATCC
TCCCCTTCCCCCTCTCCCTCTTCCCCTTCCTCCTCCTCTTCCTCTTCCTC
GCCCTCGTCCTGGTCCTGGTCCATTTCGGCGGCGCTGCCTTCTTCCTCTT
CTTCTTCCTTGCCTGAGGTAGCTCCCTATTATTTGGTGGGTCGAAGAAAG
GGAAGAGAGAGAGAGAAAAGAGGGAGGGCAGGGAGGAAAGAAAGGGCGGG
AGGGAGGGAGGGAGAGAGGAATGAAGATAGGGAAGGAGGGAAGAAGGTAG
TCAAGACACGATACATATATCCATACCGTATTCTCCCTCCCTCCCTTCCT
TCCTTGCATTTCCATACGTACCTCCTTTTCTGCTCCTCCTTCCGCGGCCT
CCTCCCTCTTCAGGATCGCCTTCCTTTCGATCTTGTTCTTCTTCTCCTCA
CTCGACCGTTTAAGAAAATCTTGTAATGGTTCTATCATATCCTCGAAATC
CAACTCCTTCAAGGCAGCAAACACGTCGTTCGCCGTCAGTGTCGACCGCT
TCCCATCCCTCGAAAAGTCATTCGCGCACGCAGTAATATACAATATAAAA
ATTCCGGCCGCGCGGGTAAACGTTGCCTTGGCCTCCTTCCCCACTTGGAC
ACTGTCTCCAACTGCCCGACGTATCACCTTTGTAACGCTCGACAAGGGCG
GCTCGAATTCAGGGCTCTTGTTGTGGTTGGTGGTGATGGTGGTGGTAGTG
TTGGTGGTCGCGGCGGCAGCGCCTGTTTCCTGGCTCTGGCTGCGGTCGTT
CTCGCCTTGCTGTTCCATCGCCGCGGGGACGGAGACTTCTCCATGCTGGG
GTTCCTGCTGGGGCTCCGGCTCGCCTGCTGACATTGGCGCTTCTGTCATC
GTCGGGGCCGTGTCTGTCATGGTGGCTGTGGTATATGTGGGCTACAGTGA
CTAAGTGACATGGAGTGGGTGTATTTCGCTCCCCGCTGACTTCTTTTGCA
TGATGAGCGATGCCTCGCTTCGTTTACATCTGGCTTGAGCGACCAGTTAG
CGGCAGCAACAAAAACGTGCCGACGAGCCCAGCTCGTCAAGACAAGGTAC
TTGTGGTGAATGTGCGGTGCAAGGATGTGTTGTGAGTGGTGGGTGAGAAT
TTACGGGGTAGCGGCAAGAGACCGACGGCGGGAGCGTCTACCGTCAGGAC
GTACCTTCCCCCTTCGCCAAGTCTCGTCCGTTGCCAACACCCCAAACATT
ATTGTCCACCCAAACATTGTCCATTCCACACTGATTGAGCGACGCCCTAC
TTCATGCACAGGCACAGGCAGCACTGGTACCATAGCACCACCATCCTAAC
GCTCATGCTGCTTTCTATTATCCCCTTTTCCGTCAACATTCTCCCTCTCT
ACTCCTCGTACAGACGTCCCTTCCATGCCACAAGTACACCGCACAGTAAG
CAAGCACCAGCACGTCCACAACTAGCCTGAGGACTGCAGTGCGGTGTCTT
GTTCTCCTACGCCCTCCTTTTGTGCCCCCGCTCTCGCCCTTCCTCCTTAA
TTCCCCCACTCCCGGCATGGCGTCTTCAGCACCCAGGCCAAAGGCAAGCC
TAGACAATGTCCTGCAAGGGCTCCAGCACTTTCAACGGCAACTCGAGCAG
GAGCGCGGGTCCATGATGGAAGAATGGCAGCAGAAAGATTTGCAGCTCTC
Ggtaagtctgtatgcgggtaggagtggggattgaagggaggtaggtgcga
ccggagcttcaactttttttcatttatctccaaccacctcacaatcccca
cacacgtatacagGCACAGCAAACAGAAATCGAAGCTCTGAAGGCAGAGA
TTAAGGTACTCAGGCAACAATACATGGTGCAATCCGAACAAATGCGCAAG
CTTGTCAAGGCCGTCCACAAAGCATCAACCGACGGTCGGACCCGTCGCCA
ACAACAGCAACAGCAGCAGCAGCTGTTGCACTTTAGTACAGATAGCCGGA
GCAGTAGTGGAAGTTGTAGCGCTGGTGGAGGAGAAGGAGAAGAAAGAGGA
GAAGGACAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCGCAGGAGGAGCAGGGGGAGCAGGAGGAGGAAGAAAAGGAG
ATGGTGAAGCACTGCCAGCGCATGGCGTTATGGTAGTGGGGGCTCACCAC
CAAGGTGACCGGCAACAGCAGCGGAATAAGCTTCAAGAACAAGAAGAACA
AGAACAAGAATATCTCCACGCCTCTACTGCTGCTGCTTCTGCTGCCGCTG
CGTACGATCTCCAGCTACAGCACCAACAGCAACACCAACGCCAACACCAA
TACCAATACCATCAACAACAAAAGCTATCTAGCAATAAAATTAGAGGAGA
AGGAGAAGGCGGCAGGAAGGAGTGTGGAAGGGAAAAGCGACGACGTTCTC
CCCTAGTCGAAACACCGAATTTAGTCCCTCGTCCTCCTTGTATTCCTCCT
CTCCCTCCTCTCCCTCCTCCAAATCCTTCTCTTCCTGCTGCTGCTCCTCC
TGCTGTTGCTCCTCCTGCTGTTGCCGTTGGTGGCCTTCTTGGAAGAAACA
GCGCCAGCATCAGTACCAGCACCAGCACCAGCCTACGAAAAAGAAGTAAG
ACATTCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACAACAAGAACAACAACGACGACAACAACAAAAACAAAAGTA
ACATCAGGCCTATTCCACCATTACCCTCCTCCTCCTTCTCCTCATCCTCT
CCCTTCTCCTCCTCCTCCTCCTCCTATCAGAATCATCCAACGGCCCCCCC
TCCACCATTGCTGTCCTCCCGTCGGGAACGAGAGGGGGAGAGGGAGGGGA
GGAAGGAAGGAGCTGCCGGTGCTCGTGCAAGTGCTGCTGCTGCTCCTCAT
CCTCATCCTCCTGCTGCTGCTCCTCTCAAACCCCACCGCTCCATCCAAGT
GGTCCGCAACCGCGAGGCCCGCATGGCCCTCCCTGCTTATGACTGCCCGG
AGTGCTCGGGCTTTCTCGACGCGATCGGTGGTTTGGTGGACAGGAAGGAG
GTTCTCAAAAAGTGTTCGCGGCACCGACATGCGCACAAGCCGTACGAGAC
ACCTGAAGGTTTTTGGGAATTGTCGTTTGCGGACTCGCACAATCAAGAGT
AGGAGAAGGAGATGCAGACTTCTCATTCTGGGTCGCTGTTTGACAACCTC
TCCTTGTCTCCTTTCTTTTCCCCACTTGTCTTAATTTCTCTCCCTCCCTC
CCTCCCACGAGTGTAAAACTACCCTCTCATGCCACCTGTATCTACTTCCG
AGGAAGTCTCCTCCTCTCGACACCCAGCAAATTACAAGAAAAAGAATAAA
ACAAATGTTGTCGATGTGTATTTTTAC
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protein sequence of NO19G01290.1

>NO19G01290.1-protein ID=NO19G01290.1-protein|Name=NO19G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MASSAPRPKASLDNVLQGLQHFQRQLEQERGSMMEEWQQKDLQLSAQQTE
IEALKAEIKVLRQQYMVQSEQMRKLVKAVHKASTDGRTRRQQQQQQQQLL
HFSTDSRSSSGSCSAGGGEGEERGEGQGGGGRRGGGGGGGGGGGAGGAGG
AGGGRKGDGEALPAHGVMVVGAHHQGDRQQQRNKLQEQEEQEQEYLHAST
AAASAAAAYDLQLQHQQQHQRQHQYQYHQQQKLSSNKIRGEGEGGRKECG
REKRRRSPLVETPNLVPRPPCIPPLPPLPPPNPSLPAAAPPAVAPPAVAV
GGLLGRNSASISTSTSTSLRKRSKTFGGSSSSSSSSSSSSNNNNNKNNND
DNNKNKSNIRPIPPLPSSSFSSSSPFSSSSSSYQNHPTAPPPPLLSSRRE
REGEREGRKEGAAGARASAAAAPHPHPPAAAPLKPHRSIQVVRNREARMA
LPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSF
ADSHNQE*
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Synonyms
Publications