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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr19 | genome | chr19:404992..408868 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01290.1 vs.
Match: EWM23652.1 (DNA repair protein Sae2/CtIP [Nannochloropsis gaditana]) HSP 1 Score: 129.8 bits (325), Expect = 2.400e-26 Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 0
Query: 414 GARASAAAAPHPHPPAAAPLK--------PHRSIQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADSHNQ 507
GA ++ P P P A K HRS+QVVR+RE RMALPAY CPECSGFLDA+G L DR+++LKKCSRHRHAHKPYETPEGFW+LSF DS ++
Sbjct: 432 GASKPQSSLPSPTGPIKAAHKVPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQDK 532
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01290.1 ID=NO19G01290.1|Name=NO19G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=3765bp GGGGAGGGGAAGGGGTAGAGAGAGAGGGGGAGAGAGAGTGAGGCATCCAA AAGATATGCGAAGTAGATTTCGATAAGTGGGCATATGTGCCTTCCTGTCA TTTTTATATGAACGCGCATTTCTGCATTTCTTCCTTCTTTTATCTTCTCT CTTCTGTCCTCTTCTGTCTACTTTCTTCTTTCCTTTGGGCGTCGTTCTTT CGTCCGGATTCCCGTCACAGTCCTTGGCTCCTCTTCTCTCTTCCTTCACT GTTTTACAGTCGTGAAAAAGACGCAGATTTTAAATCAAACGTGGCGCCTC TAAATTTATGGAAGGACGGGCAATAAAACACACCCCATCTCCCTTTCCGC CGCGCGAATTCGCAGCTGGGTGCCAAGCAGTGAACCGCAACGTTCATTTT CTTCGGTCAATTTGCCTCCTCATCTTCCTCTTCCTCCTCCTCGTCGTCTT CCTCCCCCATCATCTCGGAAGGTGCCTTGGCATCCTCCTGACTTGCATCC TCCCCTTCCCCCTCTCCCTCTTCCCCTTCCTCCTCCTCTTCCTCTTCCTC GCCCTCGTCCTGGTCCTGGTCCATTTCGGCGGCGCTGCCTTCTTCCTCTT CTTCTTCCTTGCCTGAGGTAGCTCCCTATTATTTGGTGGGTCGAAGAAAG GGAAGAGAGAGAGAGAAAAGAGGGAGGGCAGGGAGGAAAGAAAGGGCGGG AGGGAGGGAGGGAGAGAGGAATGAAGATAGGGAAGGAGGGAAGAAGGTAG TCAAGACACGATACATATATCCATACCGTATTCTCCCTCCCTCCCTTCCT TCCTTGCATTTCCATACGTACCTCCTTTTCTGCTCCTCCTTCCGCGGCCT CCTCCCTCTTCAGGATCGCCTTCCTTTCGATCTTGTTCTTCTTCTCCTCA CTCGACCGTTTAAGAAAATCTTGTAATGGTTCTATCATATCCTCGAAATC CAACTCCTTCAAGGCAGCAAACACGTCGTTCGCCGTCAGTGTCGACCGCT TCCCATCCCTCGAAAAGTCATTCGCGCACGCAGTAATATACAATATAAAA ATTCCGGCCGCGCGGGTAAACGTTGCCTTGGCCTCCTTCCCCACTTGGAC ACTGTCTCCAACTGCCCGACGTATCACCTTTGTAACGCTCGACAAGGGCG GCTCGAATTCAGGGCTCTTGTTGTGGTTGGTGGTGATGGTGGTGGTAGTG TTGGTGGTCGCGGCGGCAGCGCCTGTTTCCTGGCTCTGGCTGCGGTCGTT CTCGCCTTGCTGTTCCATCGCCGCGGGGACGGAGACTTCTCCATGCTGGG GTTCCTGCTGGGGCTCCGGCTCGCCTGCTGACATTGGCGCTTCTGTCATC GTCGGGGCCGTGTCTGTCATGGTGGCTGTGGTATATGTGGGCTACAGTGA CTAAGTGACATGGAGTGGGTGTATTTCGCTCCCCGCTGACTTCTTTTGCA TGATGAGCGATGCCTCGCTTCGTTTACATCTGGCTTGAGCGACCAGTTAG CGGCAGCAACAAAAACGTGCCGACGAGCCCAGCTCGTCAAGACAAGGTAC TTGTGGTGAATGTGCGGTGCAAGGATGTGTTGTGAGTGGTGGGTGAGAAT TTACGGGGTAGCGGCAAGAGACCGACGGCGGGAGCGTCTACCGTCAGGAC GTACCTTCCCCCTTCGCCAAGTCTCGTCCGTTGCCAACACCCCAAACATT ATTGTCCACCCAAACATTGTCCATTCCACACTGATTGAGCGACGCCCTAC TTCATGCACAGGCACAGGCAGCACTGGTACCATAGCACCACCATCCTAAC GCTCATGCTGCTTTCTATTATCCCCTTTTCCGTCAACATTCTCCCTCTCT ACTCCTCGTACAGACGTCCCTTCCATGCCACAAGTACACCGCACAGTAAG CAAGCACCAGCACGTCCACAACTAGCCTGAGGACTGCAGTGCGGTGTCTT GTTCTCCTACGCCCTCCTTTTGTGCCCCCGCTCTCGCCCTTCCTCCTTAA TTCCCCCACTCCCGGCATGGCGTCTTCAGCACCCAGGCCAAAGGCAAGCC TAGACAATGTCCTGCAAGGGCTCCAGCACTTTCAACGGCAACTCGAGCAG GAGCGCGGGTCCATGATGGAAGAATGGCAGCAGAAAGATTTGCAGCTCTC GGCACAGCAAACAGAAATCGAAGCTCTGAAGGCAGAGATTAAGGTACTCA GGCAACAATACATGGTGCAATCCGAACAAATGCGCAAGCTTGTCAAGGCC GTCCACAAAGCATCAACCGACGGTCGGACCCGTCGCCAACAACAGCAACA GCAGCAGCAGCTGTTGCACTTTAGTACAGATAGCCGGAGCAGTAGTGGAA GTTGTAGCGCTGGTGGAGGAGAAGGAGAAGAAAGAGGAGAAGGACAAGGA GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGC AGGAGGAGCAGGGGGAGCAGGAGGAGGAAGAAAAGGAGATGGTGAAGCAC TGCCAGCGCATGGCGTTATGGTAGTGGGGGCTCACCACCAAGGTGACCGG CAACAGCAGCGGAATAAGCTTCAAGAACAAGAAGAACAAGAACAAGAATA TCTCCACGCCTCTACTGCTGCTGCTTCTGCTGCCGCTGCGTACGATCTCC AGCTACAGCACCAACAGCAACACCAACGCCAACACCAATACCAATACCAT CAACAACAAAAGCTATCTAGCAATAAAATTAGAGGAGAAGGAGAAGGCGG CAGGAAGGAGTGTGGAAGGGAAAAGCGACGACGTTCTCCCCTAGTCGAAA CACCGAATTTAGTCCCTCGTCCTCCTTGTATTCCTCCTCTCCCTCCTCTC CCTCCTCCAAATCCTTCTCTTCCTGCTGCTGCTCCTCCTGCTGTTGCTCC TCCTGCTGTTGCCGTTGGTGGCCTTCTTGGAAGAAACAGCGCCAGCATCA GTACCAGCACCAGCACCAGCCTACGAAAAAGAAGTAAGACATTCGGCGGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAA CAAGAACAACAACGACGACAACAACAAAAACAAAAGTAACATCAGGCCTA TTCCACCATTACCCTCCTCCTCCTTCTCCTCATCCTCTCCCTTCTCCTCC TCCTCCTCCTCCTATCAGAATCATCCAACGGCCCCCCCTCCACCATTGCT GTCCTCCCGTCGGGAACGAGAGGGGGAGAGGGAGGGGAGGAAGGAAGGAG CTGCCGGTGCTCGTGCAAGTGCTGCTGCTGCTCCTCATCCTCATCCTCCT GCTGCTGCTCCTCTCAAACCCCACCGCTCCATCCAAGTGGTCCGCAACCG CGAGGCCCGCATGGCCCTCCCTGCTTATGACTGCCCGGAGTGCTCGGGCT TTCTCGACGCGATCGGTGGTTTGGTGGACAGGAAGGAGGTTCTCAAAAAG TGTTCGCGGCACCGACATGCGCACAAGCCGTACGAGACACCTGAAGGTTT TTGGGAATTGTCGTTTGCGGACTCGCACAATCAAGAGTAGGAGAAGGAGA TGCAGACTTCTCATTCTGGGTCGCTGTTTGACAACCTCTCCTTGTCTCCT TTCTTTTCCCCACTTGTCTTAATTTCTCTCCCTCCCTCCCTCCCACGAGT GTAAAACTACCCTCTCATGCCACCTGTATCTACTTCCGAGGAAGTCTCCT CCTCTCGACACCCAGCAAATTACAAGAAAAAGAATAAAACAAATGTTGTC GATGTGTATTTTTAC back to topprotein sequence of NO19G01290.1 >NO19G01290.1-protein ID=NO19G01290.1-protein|Name=NO19G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp MASSAPRPKASLDNVLQGLQHFQRQLEQERGSMMEEWQQKDLQLSAQQTE IEALKAEIKVLRQQYMVQSEQMRKLVKAVHKASTDGRTRRQQQQQQQQLL HFSTDSRSSSGSCSAGGGEGEERGEGQGGGGRRGGGGGGGGGGGAGGAGG AGGGRKGDGEALPAHGVMVVGAHHQGDRQQQRNKLQEQEEQEQEYLHAST AAASAAAAYDLQLQHQQQHQRQHQYQYHQQQKLSSNKIRGEGEGGRKECG REKRRRSPLVETPNLVPRPPCIPPLPPLPPPNPSLPAAAPPAVAPPAVAV GGLLGRNSASISTSTSTSLRKRSKTFGGSSSSSSSSSSSSNNNNNKNNND DNNKNKSNIRPIPPLPSSSFSSSSPFSSSSSSYQNHPTAPPPPLLSSRRE REGEREGRKEGAAGARASAAAAPHPHPPAAAPLKPHRSIQVVRNREARMA LPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSF ADSHNQE* back to topmRNA from alignment at chr19:404992..408868- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01290.1 ID=NO19G01290.1|Name=NO19G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=3877bp|location=Sequence derived from alignment at chr19:404992..408868- (Nannochloropsis oceanica) GGGGAGGGGAAGGGGTAGAGAGAGAGGGGGAGAGAGAGTGAGGCATCCAA
AAGATATGCGAAGTAGATTTCGATAAGTGGGCATATGTGCCTTCCTGTCA
TTTTTATATGAACGCGCATTTCTGCATTTCTTCCTTCTTTTATCTTCTCT
CTTCTGTCCTCTTCTGTCTACTTTCTTCTTTCCTTTGGGCGTCGTTCTTT
CGTCCGGATTCCCGTCACAGTCCTTGGCTCCTCTTCTCTCTTCCTTCACT
GTTTTACAGTCGTGAAAAAGACGCAGATTTTAAATCAAACGTGGCGCCTC
TAAATTTATGGAAGGACGGGCAATAAAACACACCCCATCTCCCTTTCCGC
CGCGCGAATTCGCAGCTGGGTGCCAAGCAGTGAACCGCAACGTTCATTTT
CTTCGGTCAATTTGCCTCCTCATCTTCCTCTTCCTCCTCCTCGTCGTCTT
CCTCCCCCATCATCTCGGAAGGTGCCTTGGCATCCTCCTGACTTGCATCC
TCCCCTTCCCCCTCTCCCTCTTCCCCTTCCTCCTCCTCTTCCTCTTCCTC
GCCCTCGTCCTGGTCCTGGTCCATTTCGGCGGCGCTGCCTTCTTCCTCTT
CTTCTTCCTTGCCTGAGGTAGCTCCCTATTATTTGGTGGGTCGAAGAAAG
GGAAGAGAGAGAGAGAAAAGAGGGAGGGCAGGGAGGAAAGAAAGGGCGGG
AGGGAGGGAGGGAGAGAGGAATGAAGATAGGGAAGGAGGGAAGAAGGTAG
TCAAGACACGATACATATATCCATACCGTATTCTCCCTCCCTCCCTTCCT
TCCTTGCATTTCCATACGTACCTCCTTTTCTGCTCCTCCTTCCGCGGCCT
CCTCCCTCTTCAGGATCGCCTTCCTTTCGATCTTGTTCTTCTTCTCCTCA
CTCGACCGTTTAAGAAAATCTTGTAATGGTTCTATCATATCCTCGAAATC
CAACTCCTTCAAGGCAGCAAACACGTCGTTCGCCGTCAGTGTCGACCGCT
TCCCATCCCTCGAAAAGTCATTCGCGCACGCAGTAATATACAATATAAAA
ATTCCGGCCGCGCGGGTAAACGTTGCCTTGGCCTCCTTCCCCACTTGGAC
ACTGTCTCCAACTGCCCGACGTATCACCTTTGTAACGCTCGACAAGGGCG
GCTCGAATTCAGGGCTCTTGTTGTGGTTGGTGGTGATGGTGGTGGTAGTG
TTGGTGGTCGCGGCGGCAGCGCCTGTTTCCTGGCTCTGGCTGCGGTCGTT
CTCGCCTTGCTGTTCCATCGCCGCGGGGACGGAGACTTCTCCATGCTGGG
GTTCCTGCTGGGGCTCCGGCTCGCCTGCTGACATTGGCGCTTCTGTCATC
GTCGGGGCCGTGTCTGTCATGGTGGCTGTGGTATATGTGGGCTACAGTGA
CTAAGTGACATGGAGTGGGTGTATTTCGCTCCCCGCTGACTTCTTTTGCA
TGATGAGCGATGCCTCGCTTCGTTTACATCTGGCTTGAGCGACCAGTTAG
CGGCAGCAACAAAAACGTGCCGACGAGCCCAGCTCGTCAAGACAAGGTAC
TTGTGGTGAATGTGCGGTGCAAGGATGTGTTGTGAGTGGTGGGTGAGAAT
TTACGGGGTAGCGGCAAGAGACCGACGGCGGGAGCGTCTACCGTCAGGAC
GTACCTTCCCCCTTCGCCAAGTCTCGTCCGTTGCCAACACCCCAAACATT
ATTGTCCACCCAAACATTGTCCATTCCACACTGATTGAGCGACGCCCTAC
TTCATGCACAGGCACAGGCAGCACTGGTACCATAGCACCACCATCCTAAC
GCTCATGCTGCTTTCTATTATCCCCTTTTCCGTCAACATTCTCCCTCTCT
ACTCCTCGTACAGACGTCCCTTCCATGCCACAAGTACACCGCACAGTAAG
CAAGCACCAGCACGTCCACAACTAGCCTGAGGACTGCAGTGCGGTGTCTT
GTTCTCCTACGCCCTCCTTTTGTGCCCCCGCTCTCGCCCTTCCTCCTTAA
TTCCCCCACTCCCGGCATGGCGTCTTCAGCACCCAGGCCAAAGGCAAGCC
TAGACAATGTCCTGCAAGGGCTCCAGCACTTTCAACGGCAACTCGAGCAG
GAGCGCGGGTCCATGATGGAAGAATGGCAGCAGAAAGATTTGCAGCTCTC
GGTAAGTCTGTATGCGGGTAGGAGTGGGGATTGAAGGGAGGTAGGTGCGA
CCGGAGCTTCAACTTTTTTTCATTTATCTCCAACCACCTCACAATCCCCA
CACACGTATACAGGCACAGCAAACAGAAATCGAAGCTCTGAAGGCAGAGA
TTAAGGTACTCAGGCAACAATACATGGTGCAATCCGAACAAATGCGCAAG
CTTGTCAAGGCCGTCCACAAAGCATCAACCGACGGTCGGACCCGTCGCCA
ACAACAGCAACAGCAGCAGCAGCTGTTGCACTTTAGTACAGATAGCCGGA
GCAGTAGTGGAAGTTGTAGCGCTGGTGGAGGAGAAGGAGAAGAAAGAGGA
GAAGGACAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCGCAGGAGGAGCAGGGGGAGCAGGAGGAGGAAGAAAAGGAG
ATGGTGAAGCACTGCCAGCGCATGGCGTTATGGTAGTGGGGGCTCACCAC
CAAGGTGACCGGCAACAGCAGCGGAATAAGCTTCAAGAACAAGAAGAACA
AGAACAAGAATATCTCCACGCCTCTACTGCTGCTGCTTCTGCTGCCGCTG
CGTACGATCTCCAGCTACAGCACCAACAGCAACACCAACGCCAACACCAA
TACCAATACCATCAACAACAAAAGCTATCTAGCAATAAAATTAGAGGAGA
AGGAGAAGGCGGCAGGAAGGAGTGTGGAAGGGAAAAGCGACGACGTTCTC
CCCTAGTCGAAACACCGAATTTAGTCCCTCGTCCTCCTTGTATTCCTCCT
CTCCCTCCTCTCCCTCCTCCAAATCCTTCTCTTCCTGCTGCTGCTCCTCC
TGCTGTTGCTCCTCCTGCTGTTGCCGTTGGTGGCCTTCTTGGAAGAAACA
GCGCCAGCATCAGTACCAGCACCAGCACCAGCCTACGAAAAAGAAGTAAG
ACATTCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACAACAAGAACAACAACGACGACAACAACAAAAACAAAAGTA
ACATCAGGCCTATTCCACCATTACCCTCCTCCTCCTTCTCCTCATCCTCT
CCCTTCTCCTCCTCCTCCTCCTCCTATCAGAATCATCCAACGGCCCCCCC
TCCACCATTGCTGTCCTCCCGTCGGGAACGAGAGGGGGAGAGGGAGGGGA
GGAAGGAAGGAGCTGCCGGTGCTCGTGCAAGTGCTGCTGCTGCTCCTCAT
CCTCATCCTCCTGCTGCTGCTCCTCTCAAACCCCACCGCTCCATCCAAGT
GGTCCGCAACCGCGAGGCCCGCATGGCCCTCCCTGCTTATGACTGCCCGG
AGTGCTCGGGCTTTCTCGACGCGATCGGTGGTTTGGTGGACAGGAAGGAG
GTTCTCAAAAAGTGTTCGCGGCACCGACATGCGCACAAGCCGTACGAGAC
ACCTGAAGGTTTTTGGGAATTGTCGTTTGCGGACTCGCACAATCAAGAGT
AGGAGAAGGAGATGCAGACTTCTCATTCTGGGTCGCTGTTTGACAACCTC
TCCTTGTCTCCTTTCTTTTCCCCACTTGTCTTAATTTCTCTCCCTCCCTC
CCTCCCACGAGTGTAAAACTACCCTCTCATGCCACCTGTATCTACTTCCG
AGGAAGTCTCCTCCTCTCGACACCCAGCAAATTACAAGAAAAAGAATAAA
ACAAATGTTGTCGATGTGTATTTTTAC back to topCoding sequence (CDS) from alignment at chr19:404992..408868- >NO19G01290.1 ID=NO19G01290.1|Name=NO19G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr19:404992..408868- (Nannochloropsis oceanica) ATGGCGTCTTCAGCACCCAGGCCAAAGGCAAGCCTAGACAATGTCCTGCA AGGGCTCCAGCACTTTCAACGGCAACTCGAGCAGGAGCGCGGGTCCATGA TGGAAGAATGGCAGCAGAAAGATTTGCAGCTCTCGGCACAGCAAACAGAA ATCGAAGCTCTGAAGGCAGAGATTAAGGTACTCAGGCAACAATACATGGT GCAATCCGAACAAATGCGCAAGCTTGTCAAGGCCGTCCACAAAGCATCAA CCGACGGTCGGACCCGTCGCCAACAACAGCAACAGCAGCAGCAGCTGTTG CACTTTAGTACAGATAGCCGGAGCAGTAGTGGAAGTTGTAGCGCTGGTGG AGGAGAAGGAGAAGAAAGAGGAGAAGGACAAGGAGGAGGAGGAAGAAGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGCAGGAGGAGCAGGGGGA GCAGGAGGAGGAAGAAAAGGAGATGGTGAAGCACTGCCAGCGCATGGCGT TATGGTAGTGGGGGCTCACCACCAAGGTGACCGGCAACAGCAGCGGAATA AGCTTCAAGAACAAGAAGAACAAGAACAAGAATATCTCCACGCCTCTACT GCTGCTGCTTCTGCTGCCGCTGCGTACGATCTCCAGCTACAGCACCAACA GCAACACCAACGCCAACACCAATACCAATACCATCAACAACAAAAGCTAT CTAGCAATAAAATTAGAGGAGAAGGAGAAGGCGGCAGGAAGGAGTGTGGA AGGGAAAAGCGACGACGTTCTCCCCTAGTCGAAACACCGAATTTAGTCCC TCGTCCTCCTTGTATTCCTCCTCTCCCTCCTCTCCCTCCTCCAAATCCTT CTCTTCCTGCTGCTGCTCCTCCTGCTGTTGCTCCTCCTGCTGTTGCCGTT GGTGGCCTTCTTGGAAGAAACAGCGCCAGCATCAGTACCAGCACCAGCAC CAGCCTACGAAAAAGAAGTAAGACATTCGGCGGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAAGAACAACAACGAC GACAACAACAAAAACAAAAGTAACATCAGGCCTATTCCACCATTACCCTC CTCCTCCTTCTCCTCATCCTCTCCCTTCTCCTCCTCCTCCTCCTCCTATC AGAATCATCCAACGGCCCCCCCTCCACCATTGCTGTCCTCCCGTCGGGAA CGAGAGGGGGAGAGGGAGGGGAGGAAGGAAGGAGCTGCCGGTGCTCGTGC AAGTGCTGCTGCTGCTCCTCATCCTCATCCTCCTGCTGCTGCTCCTCTCA AACCCCACCGCTCCATCCAAGTGGTCCGCAACCGCGAGGCCCGCATGGCC CTCCCTGCTTATGACTGCCCGGAGTGCTCGGGCTTTCTCGACGCGATCGG TGGTTTGGTGGACAGGAAGGAGGTTCTCAAAAAGTGTTCGCGGCACCGAC ATGCGCACAAGCCGTACGAGACACCTGAAGGTTTTTGGGAATTGTCGTTT GCGGACTCGCACAATCAAGAGTAG back to top
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