NO19G01290, NO19G01290 (gene) Nannochloropsis oceanica

Overview
NameNO19G01290
Unique NameNO19G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3877
Alignment locationchr19:404992..408868 -

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Properties
Property NameValue
DescriptionDNA repair protein Sae2/CtIP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:404992..408868 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004519endonuclease activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR033316RBBP8-like
IPR013882Com1/Ctip_fam
Homology
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: EWM23652.1 (DNA repair protein Sae2/CtIP [Nannochloropsis gaditana])

HSP 1 Score: 133.3 bits (334), Expect = 2.200e-27
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 0 
Query:  436 HRSIQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADSHNQ 507
            HRS+QVVR+RE RMALPAY CPECSGFLDA+G L DR+++LKKCSRHRHAHKPYETPEGFW+LSF DS ++
Sbjct:  462 HRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQDK 532

HSP 2 Score: 61.2 bits (147), Expect = 1.000e-5
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 0 
Query:    3 SSAPRPKASLDNVLQGLQHFQRQLEQERGSMMEEWQQKDLQLSAQQTEIEALKAEIKVLRQQYMVQSEQMRKLVKAVHKASTDG 87
            S+  +  A LDN L+ L  F+RQLE+ER + ++  Q+KD  L  QQ++IE L+ E ++LRQ+   Q+E+MR ++KA+ + S DG
Sbjct:    4 STCQQSVAGLDNALEELCKFRRQLEEERRTELQRAQEKDALLETQQSQIEELREENELLRQKNARQAEKMRMVMKAIKRVSGDG 87
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BLAST of NO19G01290 vs. NCBI_GenBank
Match: GAX96169.1 (Hypothetical protein PINS_004033 [Pythium insidiosum])

HSP 1 Score: 91.3 bits (225), Expect = 9.500e-15
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNRE R ALP +DC EC  + +A+ GLV   E+  KCSRHR  H+PY+TP+ FW LSF DS
Sbjct:  119 LEVVRNREQRAALPGHDCAECRKYYEALDGLVSESEIKAKCSRHRARHEPYQTPDDFWRLSFPDS 183
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_008915238.1 (hypothetical protein PPTG_18752 [Phytophthora parasitica INRA-310] >ETI30898.1 hypothetical protein F443_22046 [Phytophthora parasitica P1569] >ETM31210.1 hypothetical protein L914_21186 [Phytophthora parasitica] >ETM99501.1 hypothetical protein PPTG_18752 [Phytophthora parasitica INRA-310] >ETO59617.1 hypothetical protein F444_22062 [Phytophthora parasitica P1976] >ETP00696.1 hypothetical protein F441_21940 [Phytophthora parasitica CJ01A1] >ETP28856.1 hypothetical protein F442_21911 [Phytophthora parasitica P10297] >KUF99679.1 Beta-D-xylosidase 3 [Phytophthora nicotianae])

HSP 1 Score: 84.7 bits (208), Expect = 8.800e-13
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGL--VDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNRE R ALP +DC EC  + DA+GGL  VD      KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  187 VEVVRNREERKALPGHDCMECKKYYDALGGLDAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDS 253
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: ETK71278.1 (hypothetical protein L915_21453 [Phytophthora parasitica] >ETL24729.1 hypothetical protein L916_21318 [Phytophthora parasitica] >ETL77943.1 hypothetical protein L917_21173 [Phytophthora parasitica])

HSP 1 Score: 84.7 bits (208), Expect = 8.800e-13
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGL--VDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNRE R ALP +DC EC  + DA+GGL  VD      KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  187 VEVVRNREERKALPGHDCMECKKYYDALGGLDAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDS 253
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: KUF94893.1 (DNA endonuclease RBBP8 [Phytophthora nicotianae])

HSP 1 Score: 84.7 bits (208), Expect = 8.800e-13
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGL--VDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNRE R ALP +DC EC  + DA+GGL  VD      KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  187 VEVVRNREERKALPGHDCMECKKYYDALGGLDAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDS 253
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_009533337.1 (hypothetical protein PHYSODRAFT_361638 [Phytophthora sojae] >EGZ10592.1 hypothetical protein PHYSODRAFT_361638 [Phytophthora sojae])

HSP 1 Score: 83.6 bits (205), Expect = 2.000e-12
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGL--VDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNRE R ALP +DC EC  + DA+GGL   D      KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  246 VEVVRNREERRALPGHDCVECKKYYDALGGLGAADAAAQKNKCSRHRARFEPYQTPDDFWRLSFPDS 312
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: XP_002903059.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56229.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 82.8 bits (203), Expect = 3.400e-12
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIG--GLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNRE R ALP +DC EC  + DA+G  G VD      KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  186 VEVVRNREERKALPGHDCMECKKYYDALGALGAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDS 252
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: OWZ19069.1 (hypothetical protein PHMEG_0006736 [Phytophthora megakarya])

HSP 1 Score: 78.6 bits (192), Expect = 6.300e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            ++VVRNR+ R  LPA+DC EC  + DA+GG +       KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  173 VEVVRNRDERKELPAHDCFECKKYYDALGG-IGAAAQKNKCSRHRARFEPYQTPDDFWRLSFPDS 236
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: OQS02321.1 (GPN-loop GTPase [Thraustotheca clavata])

HSP 1 Score: 75.5 bits (184), Expect = 5.400e-10
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0 
Query:  434 KPHRSIQVVRNREARMALPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSFADS 504
            KP++ I+VVR ++ R AL  + C EC+ + +A+G     +E L  CSRHR  H+PY TPE FW LSF DS
Sbjct:  501 KPYKYIEVVRKKDERAALAGHACAECAKYYEALGEEFKGQEDL--CSRHRARHEPYSTPEDFWRLSFPDS 568
[Close]
BLAST of NO19G01290 vs. NCBI_GenBank
Match: CCI46621.1 (unnamed protein product [Albugo candida] >CCI43093.1 unnamed protein product [Albugo candida])

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-9
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 0 
Query:  439 IQVVRNREARMALPAYDCPECSGFLDAIGGL------VDRKEVLK----KCSRHRHAHKPYETPEGFWELSFADS 504
            I+V+RNR+ R  LPA+DC +CS + DAI  +       D  E +K    KCSRHR   +PY+TP+ FW LSF DS
Sbjct:  229 IEVIRNRDVRATLPAHDCRDCSKYYDAIEKMDFPMRASDSNENVKSHKMKCSRHRARFEPYQTPDDFWRLSFPDS 303
The following BLAST results are available for this feature:
BLAST of NO19G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23652.12.200e-2778.87DNA repair protein Sae2/CtIP [Nannochloropsis gadi... [more]
GAX96169.19.500e-1556.92Hypothetical protein PINS_004033 [Pythium insidios... [more]
XP_008915238.18.800e-1356.72hypothetical protein PPTG_18752 [Phytophthora para... [more]
ETK71278.18.800e-1356.72hypothetical protein L915_21453 [Phytophthora para... [more]
KUF94893.18.800e-1356.72DNA endonuclease RBBP8 [Phytophthora nicotianae][more]
XP_009533337.12.000e-1255.22hypothetical protein PHYSODRAFT_361638 [Phytophtho... [more]
XP_002903059.13.400e-1255.22conserved hypothetical protein [Phytophthora infes... [more]
OWZ19069.16.300e-1152.31hypothetical protein PHMEG_0006736 [Phytophthora m... [more]
OQS02321.15.400e-1048.57GPN-loop GTPase [Thraustotheca clavata][more]
CCI46621.11.200e-948.00unnamed protein product [Albugo candida] >CCI43093... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01290.1NO19G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01290.1NO19G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01290 ID=NO19G01290|Name=NO19G01290|organism=Nannochloropsis oceanica|type=gene|length=3877bp
GGGGAGGGGAAGGGGTAGAGAGAGAGGGGGAGAGAGAGTGAGGCATCCAA
AAGATATGCGAAGTAGATTTCGATAAGTGGGCATATGTGCCTTCCTGTCA
TTTTTATATGAACGCGCATTTCTGCATTTCTTCCTTCTTTTATCTTCTCT
CTTCTGTCCTCTTCTGTCTACTTTCTTCTTTCCTTTGGGCGTCGTTCTTT
CGTCCGGATTCCCGTCACAGTCCTTGGCTCCTCTTCTCTCTTCCTTCACT
GTTTTACAGTCGTGAAAAAGACGCAGATTTTAAATCAAACGTGGCGCCTC
TAAATTTATGGAAGGACGGGCAATAAAACACACCCCATCTCCCTTTCCGC
CGCGCGAATTCGCAGCTGGGTGCCAAGCAGTGAACCGCAACGTTCATTTT
CTTCGGTCAATTTGCCTCCTCATCTTCCTCTTCCTCCTCCTCGTCGTCTT
CCTCCCCCATCATCTCGGAAGGTGCCTTGGCATCCTCCTGACTTGCATCC
TCCCCTTCCCCCTCTCCCTCTTCCCCTTCCTCCTCCTCTTCCTCTTCCTC
GCCCTCGTCCTGGTCCTGGTCCATTTCGGCGGCGCTGCCTTCTTCCTCTT
CTTCTTCCTTGCCTGAGGTAGCTCCCTATTATTTGGTGGGTCGAAGAAAG
GGAAGAGAGAGAGAGAAAAGAGGGAGGGCAGGGAGGAAAGAAAGGGCGGG
AGGGAGGGAGGGAGAGAGGAATGAAGATAGGGAAGGAGGGAAGAAGGTAG
TCAAGACACGATACATATATCCATACCGTATTCTCCCTCCCTCCCTTCCT
TCCTTGCATTTCCATACGTACCTCCTTTTCTGCTCCTCCTTCCGCGGCCT
CCTCCCTCTTCAGGATCGCCTTCCTTTCGATCTTGTTCTTCTTCTCCTCA
CTCGACCGTTTAAGAAAATCTTGTAATGGTTCTATCATATCCTCGAAATC
CAACTCCTTCAAGGCAGCAAACACGTCGTTCGCCGTCAGTGTCGACCGCT
TCCCATCCCTCGAAAAGTCATTCGCGCACGCAGTAATATACAATATAAAA
ATTCCGGCCGCGCGGGTAAACGTTGCCTTGGCCTCCTTCCCCACTTGGAC
ACTGTCTCCAACTGCCCGACGTATCACCTTTGTAACGCTCGACAAGGGCG
GCTCGAATTCAGGGCTCTTGTTGTGGTTGGTGGTGATGGTGGTGGTAGTG
TTGGTGGTCGCGGCGGCAGCGCCTGTTTCCTGGCTCTGGCTGCGGTCGTT
CTCGCCTTGCTGTTCCATCGCCGCGGGGACGGAGACTTCTCCATGCTGGG
GTTCCTGCTGGGGCTCCGGCTCGCCTGCTGACATTGGCGCTTCTGTCATC
GTCGGGGCCGTGTCTGTCATGGTGGCTGTGGTATATGTGGGCTACAGTGA
CTAAGTGACATGGAGTGGGTGTATTTCGCTCCCCGCTGACTTCTTTTGCA
TGATGAGCGATGCCTCGCTTCGTTTACATCTGGCTTGAGCGACCAGTTAG
CGGCAGCAACAAAAACGTGCCGACGAGCCCAGCTCGTCAAGACAAGGTAC
TTGTGGTGAATGTGCGGTGCAAGGATGTGTTGTGAGTGGTGGGTGAGAAT
TTACGGGGTAGCGGCAAGAGACCGACGGCGGGAGCGTCTACCGTCAGGAC
GTACCTTCCCCCTTCGCCAAGTCTCGTCCGTTGCCAACACCCCAAACATT
ATTGTCCACCCAAACATTGTCCATTCCACACTGATTGAGCGACGCCCTAC
TTCATGCACAGGCACAGGCAGCACTGGTACCATAGCACCACCATCCTAAC
GCTCATGCTGCTTTCTATTATCCCCTTTTCCGTCAACATTCTCCCTCTCT
ACTCCTCGTACAGACGTCCCTTCCATGCCACAAGTACACCGCACAGTAAG
CAAGCACCAGCACGTCCACAACTAGCCTGAGGACTGCAGTGCGGTGTCTT
GTTCTCCTACGCCCTCCTTTTGTGCCCCCGCTCTCGCCCTTCCTCCTTAA
TTCCCCCACTCCCGGCATGGCGTCTTCAGCACCCAGGCCAAAGGCAAGCC
TAGACAATGTCCTGCAAGGGCTCCAGCACTTTCAACGGCAACTCGAGCAG
GAGCGCGGGTCCATGATGGAAGAATGGCAGCAGAAAGATTTGCAGCTCTC
Ggtaagtctgtatgcgggtaggagtggggattgaagggaggtaggtgcga
ccggagcttcaactttttttcatttatctccaaccacctcacaatcccca
cacacgtatacagGCACAGCAAACAGAAATCGAAGCTCTGAAGGCAGAGA
TTAAGGTACTCAGGCAACAATACATGGTGCAATCCGAACAAATGCGCAAG
CTTGTCAAGGCCGTCCACAAAGCATCAACCGACGGTCGGACCCGTCGCCA
ACAACAGCAACAGCAGCAGCAGCTGTTGCACTTTAGTACAGATAGCCGGA
GCAGTAGTGGAAGTTGTAGCGCTGGTGGAGGAGAAGGAGAAGAAAGAGGA
GAAGGACAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCGCAGGAGGAGCAGGGGGAGCAGGAGGAGGAAGAAAAGGAG
ATGGTGAAGCACTGCCAGCGCATGGCGTTATGGTAGTGGGGGCTCACCAC
CAAGGTGACCGGCAACAGCAGCGGAATAAGCTTCAAGAACAAGAAGAACA
AGAACAAGAATATCTCCACGCCTCTACTGCTGCTGCTTCTGCTGCCGCTG
CGTACGATCTCCAGCTACAGCACCAACAGCAACACCAACGCCAACACCAA
TACCAATACCATCAACAACAAAAGCTATCTAGCAATAAAATTAGAGGAGA
AGGAGAAGGCGGCAGGAAGGAGTGTGGAAGGGAAAAGCGACGACGTTCTC
CCCTAGTCGAAACACCGAATTTAGTCCCTCGTCCTCCTTGTATTCCTCCT
CTCCCTCCTCTCCCTCCTCCAAATCCTTCTCTTCCTGCTGCTGCTCCTCC
TGCTGTTGCTCCTCCTGCTGTTGCCGTTGGTGGCCTTCTTGGAAGAAACA
GCGCCAGCATCAGTACCAGCACCAGCACCAGCCTACGAAAAAGAAGTAAG
ACATTCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACAACAAGAACAACAACGACGACAACAACAAAAACAAAAGTA
ACATCAGGCCTATTCCACCATTACCCTCCTCCTCCTTCTCCTCATCCTCT
CCCTTCTCCTCCTCCTCCTCCTCCTATCAGAATCATCCAACGGCCCCCCC
TCCACCATTGCTGTCCTCCCGTCGGGAACGAGAGGGGGAGAGGGAGGGGA
GGAAGGAAGGAGCTGCCGGTGCTCGTGCAAGTGCTGCTGCTGCTCCTCAT
CCTCATCCTCCTGCTGCTGCTCCTCTCAAACCCCACCGCTCCATCCAAGT
GGTCCGCAACCGCGAGGCCCGCATGGCCCTCCCTGCTTATGACTGCCCGG
AGTGCTCGGGCTTTCTCGACGCGATCGGTGGTTTGGTGGACAGGAAGGAG
GTTCTCAAAAAGTGTTCGCGGCACCGACATGCGCACAAGCCGTACGAGAC
ACCTGAAGGTTTTTGGGAATTGTCGTTTGCGGACTCGCACAATCAAGAGT
AGGAGAAGGAGATGCAGACTTCTCATTCTGGGTCGCTGTTTGACAACCTC
TCCTTGTCTCCTTTCTTTTCCCCACTTGTCTTAATTTCTCTCCCTCCCTC
CCTCCCACGAGTGTAAAACTACCCTCTCATGCCACCTGTATCTACTTCCG
AGGAAGTCTCCTCCTCTCGACACCCAGCAAATTACAAGAAAAAGAATAAA
ACAAATGTTGTCGATGTGTATTTTTAC
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protein sequence of NO19G01290.1

>NO19G01290.1-protein ID=NO19G01290.1-protein|Name=NO19G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MASSAPRPKASLDNVLQGLQHFQRQLEQERGSMMEEWQQKDLQLSAQQTE
IEALKAEIKVLRQQYMVQSEQMRKLVKAVHKASTDGRTRRQQQQQQQQLL
HFSTDSRSSSGSCSAGGGEGEERGEGQGGGGRRGGGGGGGGGGGAGGAGG
AGGGRKGDGEALPAHGVMVVGAHHQGDRQQQRNKLQEQEEQEQEYLHAST
AAASAAAAYDLQLQHQQQHQRQHQYQYHQQQKLSSNKIRGEGEGGRKECG
REKRRRSPLVETPNLVPRPPCIPPLPPLPPPNPSLPAAAPPAVAPPAVAV
GGLLGRNSASISTSTSTSLRKRSKTFGGSSSSSSSSSSSSNNNNNKNNND
DNNKNKSNIRPIPPLPSSSFSSSSPFSSSSSSYQNHPTAPPPPLLSSRRE
REGEREGRKEGAAGARASAAAAPHPHPPAAAPLKPHRSIQVVRNREARMA
LPAYDCPECSGFLDAIGGLVDRKEVLKKCSRHRHAHKPYETPEGFWELSF
ADSHNQE*
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Synonyms
Publications