NO19G01280, NO19G01280 (gene) Nannochloropsis oceanica

Overview
NameNO19G01280
Unique NameNO19G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3877
Alignment locationchr19:404992..408868 +

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Properties
Property NameValue
DescriptionDNA polymerase epsilon subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:404992..408868 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Homology
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: XP_005854843.1 (DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526] >EKU21523.1 DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.0 bits (463), Expect = 1.200e-42
Identity = 95/119 (79.83%), Postives = 106/119 (89.08%), Query Frame = 0 
Query:   69 SPEFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIERKAILKR----EEAAEGGAEKE 184
            SPEFEPPLSSVTK+IRRAVGDSVQVGKEAKATFTR AGIFILYITACANDFSR+GKR+T+TANDV+ ALKEL+FEDM+EPLQ+FL+RS+EEKKNK E KAI KR    EE  + G EKE
Sbjct:   57 SPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRSNEEKKNKAEIKAIRKREAAEEEVGDSGGEKE 175
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: EWM23659.1 (dna polymerase epsilon subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 1.100e-35
Identity = 78/98 (79.59%), Postives = 90/98 (91.84%), Query Frame = 0 
Query:   69 SPEFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIER 167
            SPEFEPPLSSVTK+IRRAVGDSVQVGKEAKATFTR AGIFILYITACANDFSR+GKR+T+TANDV+ ALKEL+FEDM+EPLQ+FL+R    ++ + ER
Sbjct:   81 SPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRGGSGRQRRRER 178
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: CBN76059.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.2 bits (269), Expect = 3.800e-20
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 0 
Query:   69 SPEFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNK 164
            +PEFEPP + V +VI+  + D+VQ+GK+AKA F+R+AGIFI+Y+TACANDF R+ KR T++A DV  A+KEL+F ++ EPL+++L +   E   K
Sbjct:    6 TPEFEPPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAK 100
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: XP_002178116.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50930.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 105.9 bits (263), Expect = 1.900e-19
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 0 
Query:   71 EFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIERKA 169
            EFEPPL+ V ++++  +  S  VGK+A A F RA+GIFI+Y+TACANDF+R  KR T+TANDV AA+KELDF+D    +  FL+     +K+K + KA
Sbjct:   18 EFEPPLACVRRILKHTLPSSTNVGKDASAAFARASGIFIIYLTACANDFARTHKRQTITANDVLAAIKELDFDDFSTDMMSFLESYRVSEKHKKDAKA 115
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: GAX15915.1 (DNA polymerase epsilon subunit 3 [Fistulifera solaris])

HSP 1 Score: 100.1 bits (248), Expect = 1.000e-17
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 0 
Query:   71 EFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLK 155
            EFEPPL+ V ++++ ++  S  VGK+A A F RA GIFI+Y+TACANDF+R+ KR T+TANDV AA++ELDF+     +  FL+
Sbjct:   22 EFEPPLACVRRLLKHSLPSSTNVGKDASAAFARACGIFIIYLTACANDFAREHKRQTITANDVLAAVQELDFDSFTPDMTSFLE 105
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: GAX12678.1 (DNA polymerase epsilon subunit 3 [Fistulifera solaris])

HSP 1 Score: 100.1 bits (248), Expect = 1.000e-17
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 0 
Query:   71 EFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLK 155
            EFEPPL+ V ++++ ++  S  VGK+A A F RA GIFI+Y+TACANDF+R+ KR T+TANDV AA++ELDF+     +  FL+
Sbjct:  263 EFEPPLACVRRLLKHSLPSSTNVGKDASAAFARACGIFIIYLTACANDFAREHKRQTITANDVLAAVQELDFDSFTPEMTSFLE 346
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: OEU15310.1 (hypothetical protein FRACYDRAFT_164395, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-16
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = 0 
Query:   75 PLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIERKA 169
            P++ V +++++ +  S  VGK+A A F RA+GIFI+Y+TACANDF+R+ +R T+TANDV AA+KEL+F++    L  FL+   E +KNK + KA
Sbjct:    1 PVACVRRILKKTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFSPELTSFLEGYREAEKNKKDVKA 94
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: XP_009041681.1 (hypothetical protein AURANDRAFT_16670, partial [Aureococcus anophagefferens] >EGB03606.1 hypothetical protein AURANDRAFT_16670, partial [Aureococcus anophagefferens])

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-15
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 0 
Query:   71 EFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLK--RSSEEKKNK 164
            +FEPP + + ++++ A+ DS QV +EAK  F +AAGIFI+Y+T CAND  +D KR T++A DV  A  EL+ E+M + LQDFL   R +E  K K
Sbjct:    1 DFEPPAACINRIVKAALPDSTQVTREAKTAFAKAAGIFIIYLTTCANDVCKDKKRQTVSAADVLQAFAELELEEMKDTLQDFLAHFRQAEGTKRK 95
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: XP_022085190.1 (DNA polymerase epsilon subunit 3-like [Acanthaster planci])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 40/91 (43.96%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:   75 PLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIE 166
            P S +T++++ AV + + + KEA+   ++AA +F+LY T+CAN+++  GKR TL A DVFAA+K+++FE+ IEPL++ L+   +E+K K E
Sbjct:   11 PHSVITRIMKEAVPEGISISKEARNAVSKAASVFVLYATSCANNYALKGKRKTLNAADVFAAMKDMEFEEFIEPLENSLQEFRQEQKGKKE 101
[Close]
BLAST of NO19G01280 vs. NCBI_GenBank
Match: XP_023211230.1 (DNA polymerase epsilon subunit 3-like [Centruroides sculpturatus])

HSP 1 Score: 89.4 bits (220), Expect = 1.800e-14
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   71 EFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIERKAILKREEAAEGGAEKEGAT 187
            +F  P + VT++++ A+ D V V KEA+A  ++AA +F+LY T+CAN+F+   KR TL  NDV +A+++++F+  IEPL+D LK    EK          K+E  A  G +K+  T
Sbjct:    7 DFNLPNAVVTRIVKEALPDGVNVSKEARAALSKAASVFVLYTTSCANNFAMKAKRKTLLGNDVLSAMEDMEFDRFIEPLKDCLKTYQLEKS---------KKESGANKGKKKQNVT 113
The following BLAST results are available for this feature:
BLAST of NO19G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854843.11.200e-4279.83DNA polymerase epsilon subunit 3, partial [Nannoch... [more]
EWM23659.11.100e-3579.59dna polymerase epsilon subunit 3 [Nannochloropsis ... [more]
CBN76059.13.800e-2052.63conserved unknown protein [Ectocarpus siliculosus][more]
XP_002178116.11.900e-1952.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX15915.11.000e-1753.57DNA polymerase epsilon subunit 3 [Fistulifera sola... [more]
GAX12678.11.000e-1753.57DNA polymerase epsilon subunit 3 [Fistulifera sola... [more]
OEU15310.11.500e-1648.94hypothetical protein FRACYDRAFT_164395, partial [F... [more]
XP_009041681.11.600e-1548.42hypothetical protein AURANDRAFT_16670, partial [Au... [more]
XP_022085190.11.100e-1443.96DNA polymerase epsilon subunit 3-like [Acanthaster... [more]
XP_023211230.11.800e-1439.66DNA polymerase epsilon subunit 3-like [Centruroide... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01280.1NO19G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641204gene_7523Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100191g1gene6810Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01280.1NO19G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01280 ID=NO19G01280|Name=NO19G01280|organism=Nannochloropsis oceanica|type=gene|length=3877bp
GTAAAAATACACATCGACAACATTTGTTTTATTCTTTTTCTTGTAATTTG
CTGGGTGTCGAGAGGAGGAGACTTCCTCGGAAGTAGATACAGGTGGCATG
AGAGGGTAGTTTTACACTCGTGGGAGGGAGGGAGGGAGAGAAATTAAGAC
AAGTGGGGAAAAGAAAGGAGACAAGGAGAGGTTGTCAAACAGCGACCCAG
AATGAGAAGTCTGCATCTCCTTCTCCTACTCTTGATTGTGCGAGTCCGCA
AACGACAATTCCCAAAAACCTTCAGGTGTCTCGTACGGCTTGTGCGCATG
TCGGTGCCGCGAACACTTTTTGAGAACCTCCTTCCTGTCCACCAAACCAC
CGATCGCGTCGAGAAAGCCCGAGCACTCCGGGCAGTCATAAGCAGGGAGG
GCCATGCGGGCCTCGCGGTTGCGGACCACTTGGATGGAGCGGTGGGGTTT
GAGAGGAGCAGCAGCAGGAGGATGAGGATGAGGAGCAGCAGCAGCACTTG
CACGAGCACCGGCAGCTCCTTCCTTCCTCCCCTCCCTCTCCCCCTCTCGT
TCCCGACGGGAGGACAGCAATGGTGGAGGGGGGGCCGTTGGATGATTCTG
ATAGGAGGAGGAGGAGGAGGAGAAGGGAGAGGATGAGGAGAAGGAGGAGG
AGGGTAATGGTGGAATAGGCCTGATGTTACTTTTGTTTTTGTTGTTGTCG
TCGTTGTTGTTCTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCCGCCGAATGTCTTACTTCTTTTTCGTAGGCTGG
TGCTGGTGCTGGTACTGATGCTGGCGCTGTTTCTTCCAAGAAGGCCACCA
ACGGCAACAGCAGGAGGAGCAACAGCAGGAGGAGCAGCAGCAGGAAGAGA
AGGATTTGGAGGAGGGAGAGGAGGGAGAGGAGGAATACAAGGAGGACGAG
GGACTAAATTCGGTGTTTCGACTAGGGGAGAACGTCGTCGCTTTTCCCTT
CCACACTCCTTCCTGCCGCCTTCTCCTTCTCCTCTAATTTTATTGCTAGA
TAGCTTTTGTTGTTGATGGTATTGGTATTGGTGTTGGCGTTGGTGTTGCT
GTTGGTGCTGTAGCTGGAGATCGTACGCAGCGGCAGCAGAAGCAGCAGCA
GTAGAGGCGTGGAGATATTCTTGTTCTTGTTCTTCTTGTTCTTGAAGCTT
ATTCCGCTGCTGTTGCCGGTCACCTTGGTGGTGAGCCCCCACTACCATAA
CGCCATGCGCTGGCAGTGCTTCACCATCTCCTTTTCTTCCTCCTCCTGCT
CCCCCTGCTCCTCCTGCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTTGTCCTTCTCCTCTTTCTTCTCCTTCTCCTC
CACCAGCGCTACAACTTCCACTACTGCTCCGGCTATCTGTACTAAAGTGC
AACAGCTGCTGCTGCTGTTGCTGTTGTTGGCGACGGGTCCGACCGTCGGT
TGATGCTTTGTGGACGGCCTTGACAAGCTTGCGCATTTGTTCGGATTGCA
CCATGTATTGTTGCCTGAGTACCTTAATCTCTGCCTTCAGAGCTTCGATT
TCTGTTTGCTGTGCCTGTATACGTGTGTGGGGATTGTGAGGTGGTTGGAG
ATAAATGAAAAAAAGTTGAAGCTCCGGTCGCACCTACCTCCCTTCAATCC
CCACTCCTACCCGCATACAGACTTACCGAGAGCTGCAAATCTTTCTGCTG
CCATTCTTCCATCATGGACCCGCGCTCCTGCTCGAGTTGCCGTTGAAAGT
GCTGGAGCCCTTGCAGGACATTGTCTAGGCTTGCCTTTGGCCTGGGTGCT
GAAGACGCCATGCCGGGAGTGGGGGAATTAAGGAGGAAGGGCGAGAGCGG
GGGCACAAAAGGAGGGCGTAGGAGAACAAGACACCGCACTGCAGTCCTCA
GGCTAGTTGTGGACGTGCTGGTGCTTGCTTACTGTGCGGTGTACTTGTGG
CATGGAAGGGACGTCTGTACGAGGAGTAGAGAGGGAGAATGTTGACGGAA
AAGGGGATAATAGAAAGCAGCATGAGCGTTAGGATGGTGGTGCTATGGTA
CCAGTGCTGCCTGTGCCTGTGCATGAAGTAGGGCGTCGCTCAATCAGTGT
GGAATGGACAATGTTTGGGTGGACAATAATGTTTGGGGTGTTGGCAACGG
ACGAGACTTGGCGAAGGGGGAAGGTACGTCCTGACGGTAGACGCTCCCGC
CGTCGGTCTCTTGCCGCTACCCCGTAAATTCTCACCCACCACTCACAACA
CATCCTTGCACCGCACATTCACCACAAGTACCTTGTCTTGACGAGCTGGG
CTCGTCGGCACGTTTTTGTTGCTGCCGCTAACTGGTCGCTCAAGCCAGAT
GTAAACGAAGCGAGGCATCGCTCATCATGCAAAAGAAGTCAGCGGGGAGC
GAAATACACCCACTCCATGTCACTTAGTCACTGTAGCCCACATATACCAC
AGCCACCATGACAGACACGGCCCCGACGATGACAGAAGCGCCAATGTCAG
CAGGCGAGCCGGAGCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTC
CCCGCGGCGATGGAACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGA
AACAGGCGCTGCCGCCGCGACCACCAACACTACCACCACCATCACCACCA
ACCACAACAAGAGCCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAG
GTGATACGTCGGGCAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAA
GGCAACGTTTACCCGCGCGGCCGGAATTTTTATATTGTATATTACTGCGT
GCGCGAATGACTTTTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAAC
GACGTGTTTGCTGCCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACC
ATTACAAGATTTTCTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCG
AAAGGAAGGCGATCCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAA
AAGGAGgtacgtatggaaatgcaaggaaggaagggagggagggagaatac
ggtatggatatatgtatcgtgtcttgactaccttcttccctccttcccta
tcttcattcctctctccctccctccctcccgccctttctttcctccctgc
cctccctcttttctctctctctcttccctttcttcgacccaccaaataat
agGGAGCTACCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCC
GAAATGGACCAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGA
AGGGGAAGAGGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCA
AGGCACCTTCCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAG
GAAGATGAGGAGGCAAATTGACCGAAGAAAATGAACGTTGCGGTTCACTG
CTTGGCACCCAGCTGCGAATTCGCGCGGCGGAAAGGGAGATGGGGTGTGT
TTTATTGCCCGTCCTTCCATAAATTTAGAGGCGCCACGTTTGATTTAAAA
TCTGCGTCTTTTTCACGACTGTAAAACAGTGAAGGAAGAGAGAAGAGGAG
CCAAGGACTGTGACGGGAATCCGGACGAAAGAACGACGCCCAAAGGAAAG
AAGAAAGTAGACAGAAGAGGACAGAAGAGAGAAGATAAAAGAAGGAAGAA
ATGCAGAAATGCGCGTTCATATAAAAATGACAGGAAGGCACATATGCCCA
CTTATCGAAATCTACTTCGCATATCTTTTGGATGCCTCACTCTCTCTCCC
CCTCTCTCTCTACCCCTTCCCCTCCCC
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protein sequence of NO19G01280.1

>NO19G01280.1-protein ID=NO19G01280.1-protein|Name=NO19G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MTDTAPTMTEAPMSAGEPEPQQEPQHGEVSVPAAMEQQGENDRSQSQETG
AAAATTNTTTTITTNHNKSPEFEPPLSSVTKVIRRAVGDSVQVGKEAKAT
FTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQ
DFLKRSSEEKKNKIERKAILKREEAAEGGAEKEGATSGKEEEEEEGSAAE
MDQDQDEGEEEEEEEEGEEGEGEGEDASQEDAKAPSEMMGEEDDEEEEEE
DEEAN*
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Synonyms
Publications