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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr19 | genome | chr19:404992..408868 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01280.1 vs.
Match: XP_005854843.1 (DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526]; EKU21523.1 DNA polymerase epsilon subunit 3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 175.6 bits (444), Expect = 1.900e-40 Identity = 108/172 (62.79%), Postives = 129/172 (75.00%), Query Frame = 0
Query: 21 QQEPQHGEVSVPAAMEQQGENDRSQSQETGAAAATTNTTTTITTNHNKSPEFEPPLSSVTKVIRRAVGDSVQVGKEAKATFTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQDFLKRSSEEKKNKIERKAILKREEAAEGGAEKEGATSGKEEE 193
+QE + G++S Q ++D + +G A T T + KSPEFEPPLSSVTK+IRRAVGDSVQVGKEAKATFTR AGIFILYITACANDFSR+GKR+T+TANDV+ ALKEL+FEDM+EPLQ+FL+RS+EEKKNK E KAI KRE AE+E SG E+E
Sbjct: 17 EQEQETGQISQLETTNQHDKDDGNGI--SGEKEAPTAATVS------KSPEFEPPLSSVTKIIRRAVGDSVQVGKEAKATFTRVAGIFILYITACANDFSREGKRATITANDVYQALKELEFEDMVEPLQEFLRRSNEEKKNKAEIKAIRKRE-----AAEEEVGDSGGEKE 175
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01280.1 ID=NO19G01280.1|Name=NO19G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3681bp
GTAAAAATACACATCGACAACATTTGTTTTATTCTTTTTCTTGTAATTTG
CTGGGTGTCGAGAGGAGGAGACTTCCTCGGAAGTAGATACAGGTGGCATG
AGAGGGTAGTTTTACACTCGTGGGAGGGAGGGAGGGAGAGAAATTAAGAC
AAGTGGGGAAAAGAAAGGAGACAAGGAGAGGTTGTCAAACAGCGACCCAG
AATGAGAAGTCTGCATCTCCTTCTCCTACTCTTGATTGTGCGAGTCCGCA
AACGACAATTCCCAAAAACCTTCAGGTGTCTCGTACGGCTTGTGCGCATG
TCGGTGCCGCGAACACTTTTTGAGAACCTCCTTCCTGTCCACCAAACCAC
CGATCGCGTCGAGAAAGCCCGAGCACTCCGGGCAGTCATAAGCAGGGAGG
GCCATGCGGGCCTCGCGGTTGCGGACCACTTGGATGGAGCGGTGGGGTTT
GAGAGGAGCAGCAGCAGGAGGATGAGGATGAGGAGCAGCAGCAGCACTTG
CACGAGCACCGGCAGCTCCTTCCTTCCTCCCCTCCCTCTCCCCCTCTCGT
TCCCGACGGGAGGACAGCAATGGTGGAGGGGGGGCCGTTGGATGATTCTG
ATAGGAGGAGGAGGAGGAGGAGAAGGGAGAGGATGAGGAGAAGGAGGAGG
AGGGTAATGGTGGAATAGGCCTGATGTTACTTTTGTTTTTGTTGTTGTCG
TCGTTGTTGTTCTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCCGCCGAATGTCTTACTTCTTTTTCGTAGGCTGG
TGCTGGTGCTGGTACTGATGCTGGCGCTGTTTCTTCCAAGAAGGCCACCA
ACGGCAACAGCAGGAGGAGCAACAGCAGGAGGAGCAGCAGCAGGAAGAGA
AGGATTTGGAGGAGGGAGAGGAGGGAGAGGAGGAATACAAGGAGGACGAG
GGACTAAATTCGGTGTTTCGACTAGGGGAGAACGTCGTCGCTTTTCCCTT
CCACACTCCTTCCTGCCGCCTTCTCCTTCTCCTCTAATTTTATTGCTAGA
TAGCTTTTGTTGTTGATGGTATTGGTATTGGTGTTGGCGTTGGTGTTGCT
GTTGGTGCTGTAGCTGGAGATCGTACGCAGCGGCAGCAGAAGCAGCAGCA
GTAGAGGCGTGGAGATATTCTTGTTCTTGTTCTTCTTGTTCTTGAAGCTT
ATTCCGCTGCTGTTGCCGGTCACCTTGGTGGTGAGCCCCCACTACCATAA
CGCCATGCGCTGGCAGTGCTTCACCATCTCCTTTTCTTCCTCCTCCTGCT
CCCCCTGCTCCTCCTGCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTTGTCCTTCTCCTCTTTCTTCTCCTTCTCCTC
CACCAGCGCTACAACTTCCACTACTGCTCCGGCTATCTGTACTAAAGTGC
AACAGCTGCTGCTGCTGTTGCTGTTGTTGGCGACGGGTCCGACCGTCGGT
TGATGCTTTGTGGACGGCCTTGACAAGCTTGCGCATTTGTTCGGATTGCA
CCATGTATTGTTGCCTGAGTACCTTAATCTCTGCCTTCAGAGCTTCGATT
TCTGTTTGCTGTGCCTGTATACGTGTGTGGGGATTGTGAGGTGGTTGGAG
ATAAATGAAAAAAAGTTGAAGCTCCGGTCGCACCTACCTCCCTTCAATCC
CCACTCCTACCCGCATACAGACTTACCGAGAGCTGCAAATCTTTCTGCTG
CCATTCTTCCATCATGGACCCGCGCTCCTGCTCGAGTTGCCGTTGAAAGT
GCTGGAGCCCTTGCAGGACATTGTCTAGGCTTGCCTTTGGCCTGGGTGCT
GAAGACGCCATGCCGGGAGTGGGGGAATTAAGGAGGAAGGGCGAGAGCGG
GGGCACAAAAGGAGGGCGTAGGAGAACAAGACACCGCACTGCAGTCCTCA
GGCTAGTTGTGGACGTGCTGGTGCTTGCTTACTGTGCGGTGTACTTGTGG
CATGGAAGGGACGTCTGTACGAGGAGTAGAGAGGGAGAATGTTGACGGAA
AAGGGGATAATAGAAAGCAGCATGAGCGTTAGGATGGTGGTGCTATGGTA
CCAGTGCTGCCTGTGCCTGTGCATGAAGTAGGGCGTCGCTCAATCAGTGT
GGAATGGACAATGTTTGGGTGGACAATAATGTTTGGGGTGTTGGCAACGG
ACGAGACTTGGCGAAGGGGGAAGGTACGTCCTGACGGTAGACGCTCCCGC
CGTCGGTCTCTTGCCGCTACCCCGTAAATTCTCACCCACCACTCACAACA
CATCCTTGCACCGCACATTCACCACAAGTACCTTGTCTTGACGAGCTGGG
CTCGTCGGCACGTTTTTGTTGCTGCCGCTAACTGGTCGCTCAAGCCAGAT
GTAAACGAAGCGAGGCATCGCTCATCATGCAAAAGAAGTCAGCGGGGAGC
GAAATACACCCACTCCATGTCACTTAGTCACTGTAGCCCACATATACCAC
AGCCACCATGACAGACACGGCCCCGACGATGACAGAAGCGCCAATGTCAG
CAGGCGAGCCGGAGCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTC
CCCGCGGCGATGGAACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGA
AACAGGCGCTGCCGCCGCGACCACCAACACTACCACCACCATCACCACCA
ACCACAACAAGAGCCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAG
GTGATACGTCGGGCAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAA
GGCAACGTTTACCCGCGCGGCCGGAATTTTTATATTGTATATTACTGCGT
GCGCGAATGACTTTTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAAC
GACGTGTTTGCTGCCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACC
ATTACAAGATTTTCTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCG
AAAGGAAGGCGATCCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAA
AAGGAGGGAGCTACCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGC
CGCCGAAATGGACCAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGG
AGGAAGGGGAAGAGGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGAT
GCCAAGGCACCTTCCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGA
AGAGGAAGATGAGGAGGCAAATTGACCGAAGAAAATGAACGTTGCGGTTC
ACTGCTTGGCACCCAGCTGCGAATTCGCGCGGCGGAAAGGGAGATGGGGT
GTGTTTTATTGCCCGTCCTTCCATAAATTTAGAGGCGCCACGTTTGATTT
AAAATCTGCGTCTTTTTCACGACTGTAAAACAGTGAAGGAAGAGAGAAGA
GGAGCCAAGGACTGTGACGGGAATCCGGACGAAAGAACGACGCCCAAAGG
AAAGAAGAAAGTAGACAGAAGAGGACAGAAGAGAGAAGATAAAAGAAGGA
AGAAATGCAGAAATGCGCGTTCATATAAAAATGACAGGAAGGCACATATG
CCCACTTATCGAAATCTACTTCGCATATCTTTTGGATGCCTCACTCTCTC
TCCCCCTCTCTCTCTACCCCTTCCCCTCCCC back to topprotein sequence of NO19G01280.1 >NO19G01280.1-protein ID=NO19G01280.1-protein|Name=NO19G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MTDTAPTMTEAPMSAGEPEPQQEPQHGEVSVPAAMEQQGENDRSQSQETG
AAAATTNTTTTITTNHNKSPEFEPPLSSVTKVIRRAVGDSVQVGKEAKAT
FTRAAGIFILYITACANDFSRDGKRSTLTANDVFAALKELDFEDMIEPLQ
DFLKRSSEEKKNKIERKAILKREEAAEGGAEKEGATSGKEEEEEEGSAAE
MDQDQDEGEEEEEEEEGEEGEGEGEDASQEDAKAPSEMMGEEDDEEEEEE
DEEAN* back to topmRNA from alignment at chr19:404992..408868+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01280.1 ID=NO19G01280.1|Name=NO19G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3877bp|location=Sequence derived from alignment at chr19:404992..408868+ (Nannochloropsis oceanica)
GTAAAAATACACATCGACAACATTTGTTTTATTCTTTTTCTTGTAATTTG
CTGGGTGTCGAGAGGAGGAGACTTCCTCGGAAGTAGATACAGGTGGCATG
AGAGGGTAGTTTTACACTCGTGGGAGGGAGGGAGGGAGAGAAATTAAGAC
AAGTGGGGAAAAGAAAGGAGACAAGGAGAGGTTGTCAAACAGCGACCCAG
AATGAGAAGTCTGCATCTCCTTCTCCTACTCTTGATTGTGCGAGTCCGCA
AACGACAATTCCCAAAAACCTTCAGGTGTCTCGTACGGCTTGTGCGCATG
TCGGTGCCGCGAACACTTTTTGAGAACCTCCTTCCTGTCCACCAAACCAC
CGATCGCGTCGAGAAAGCCCGAGCACTCCGGGCAGTCATAAGCAGGGAGG
GCCATGCGGGCCTCGCGGTTGCGGACCACTTGGATGGAGCGGTGGGGTTT
GAGAGGAGCAGCAGCAGGAGGATGAGGATGAGGAGCAGCAGCAGCACTTG
CACGAGCACCGGCAGCTCCTTCCTTCCTCCCCTCCCTCTCCCCCTCTCGT
TCCCGACGGGAGGACAGCAATGGTGGAGGGGGGGCCGTTGGATGATTCTG
ATAGGAGGAGGAGGAGGAGGAGAAGGGAGAGGATGAGGAGAAGGAGGAGG
AGGGTAATGGTGGAATAGGCCTGATGTTACTTTTGTTTTTGTTGTTGTCG
TCGTTGTTGTTCTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCCGCCGAATGTCTTACTTCTTTTTCGTAGGCTGG
TGCTGGTGCTGGTACTGATGCTGGCGCTGTTTCTTCCAAGAAGGCCACCA
ACGGCAACAGCAGGAGGAGCAACAGCAGGAGGAGCAGCAGCAGGAAGAGA
AGGATTTGGAGGAGGGAGAGGAGGGAGAGGAGGAATACAAGGAGGACGAG
GGACTAAATTCGGTGTTTCGACTAGGGGAGAACGTCGTCGCTTTTCCCTT
CCACACTCCTTCCTGCCGCCTTCTCCTTCTCCTCTAATTTTATTGCTAGA
TAGCTTTTGTTGTTGATGGTATTGGTATTGGTGTTGGCGTTGGTGTTGCT
GTTGGTGCTGTAGCTGGAGATCGTACGCAGCGGCAGCAGAAGCAGCAGCA
GTAGAGGCGTGGAGATATTCTTGTTCTTGTTCTTCTTGTTCTTGAAGCTT
ATTCCGCTGCTGTTGCCGGTCACCTTGGTGGTGAGCCCCCACTACCATAA
CGCCATGCGCTGGCAGTGCTTCACCATCTCCTTTTCTTCCTCCTCCTGCT
CCCCCTGCTCCTCCTGCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTTGTCCTTCTCCTCTTTCTTCTCCTTCTCCTC
CACCAGCGCTACAACTTCCACTACTGCTCCGGCTATCTGTACTAAAGTGC
AACAGCTGCTGCTGCTGTTGCTGTTGTTGGCGACGGGTCCGACCGTCGGT
TGATGCTTTGTGGACGGCCTTGACAAGCTTGCGCATTTGTTCGGATTGCA
CCATGTATTGTTGCCTGAGTACCTTAATCTCTGCCTTCAGAGCTTCGATT
TCTGTTTGCTGTGCCTGTATACGTGTGTGGGGATTGTGAGGTGGTTGGAG
ATAAATGAAAAAAAGTTGAAGCTCCGGTCGCACCTACCTCCCTTCAATCC
CCACTCCTACCCGCATACAGACTTACCGAGAGCTGCAAATCTTTCTGCTG
CCATTCTTCCATCATGGACCCGCGCTCCTGCTCGAGTTGCCGTTGAAAGT
GCTGGAGCCCTTGCAGGACATTGTCTAGGCTTGCCTTTGGCCTGGGTGCT
GAAGACGCCATGCCGGGAGTGGGGGAATTAAGGAGGAAGGGCGAGAGCGG
GGGCACAAAAGGAGGGCGTAGGAGAACAAGACACCGCACTGCAGTCCTCA
GGCTAGTTGTGGACGTGCTGGTGCTTGCTTACTGTGCGGTGTACTTGTGG
CATGGAAGGGACGTCTGTACGAGGAGTAGAGAGGGAGAATGTTGACGGAA
AAGGGGATAATAGAAAGCAGCATGAGCGTTAGGATGGTGGTGCTATGGTA
CCAGTGCTGCCTGTGCCTGTGCATGAAGTAGGGCGTCGCTCAATCAGTGT
GGAATGGACAATGTTTGGGTGGACAATAATGTTTGGGGTGTTGGCAACGG
ACGAGACTTGGCGAAGGGGGAAGGTACGTCCTGACGGTAGACGCTCCCGC
CGTCGGTCTCTTGCCGCTACCCCGTAAATTCTCACCCACCACTCACAACA
CATCCTTGCACCGCACATTCACCACAAGTACCTTGTCTTGACGAGCTGGG
CTCGTCGGCACGTTTTTGTTGCTGCCGCTAACTGGTCGCTCAAGCCAGAT
GTAAACGAAGCGAGGCATCGCTCATCATGCAAAAGAAGTCAGCGGGGAGC
GAAATACACCCACTCCATGTCACTTAGTCACTGTAGCCCACATATACCAC
AGCCACCATGACAGACACGGCCCCGACGATGACAGAAGCGCCAATGTCAG
CAGGCGAGCCGGAGCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTC
CCCGCGGCGATGGAACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGA
AACAGGCGCTGCCGCCGCGACCACCAACACTACCACCACCATCACCACCA
ACCACAACAAGAGCCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAG
GTGATACGTCGGGCAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAA
GGCAACGTTTACCCGCGCGGCCGGAATTTTTATATTGTATATTACTGCGT
GCGCGAATGACTTTTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAAC
GACGTGTTTGCTGCCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACC
ATTACAAGATTTTCTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCG
AAAGGAAGGCGATCCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAA
AAGGAGGTACGTATGGAAATGCAAGGAAGGAAGGGAGGGAGGGAGAATAC
GGTATGGATATATGTATCGTGTCTTGACTACCTTCTTCCCTCCTTCCCTA
TCTTCATTCCTCTCTCCCTCCCTCCCTCCCGCCCTTTCTTTCCTCCCTGC
CCTCCCTCTTTTCTCTCTCTCTCTTCCCTTTCTTCGACCCACCAAATAAT
AGGGAGCTACCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCC
GAAATGGACCAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGA
AGGGGAAGAGGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCA
AGGCACCTTCCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAG
GAAGATGAGGAGGCAAATTGACCGAAGAAAATGAACGTTGCGGTTCACTG
CTTGGCACCCAGCTGCGAATTCGCGCGGCGGAAAGGGAGATGGGGTGTGT
TTTATTGCCCGTCCTTCCATAAATTTAGAGGCGCCACGTTTGATTTAAAA
TCTGCGTCTTTTTCACGACTGTAAAACAGTGAAGGAAGAGAGAAGAGGAG
CCAAGGACTGTGACGGGAATCCGGACGAAAGAACGACGCCCAAAGGAAAG
AAGAAAGTAGACAGAAGAGGACAGAAGAGAGAAGATAAAAGAAGGAAGAA
ATGCAGAAATGCGCGTTCATATAAAAATGACAGGAAGGCACATATGCCCA
CTTATCGAAATCTACTTCGCATATCTTTTGGATGCCTCACTCTCTCTCCC
CCTCTCTCTCTACCCCTTCCCCTCCCC back to topCoding sequence (CDS) from alignment at chr19:404992..408868+ >NO19G01280.1 ID=NO19G01280.1|Name=NO19G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr19:404992..408868+ (Nannochloropsis oceanica)
ATGACAGACACGGCCCCGACGATGACAGAAGCGCCAATGTCAGCAGGCGA
GCCGGAGCCCCAGCAGGAACCCCAGCATGGAGAAGTCTCCGTCCCCGCGG
CGATGGAACAGCAAGGCGAGAACGACCGCAGCCAGAGCCAGGAAACAGGC
GCTGCCGCCGCGACCACCAACACTACCACCACCATCACCACCAACCACAA
CAAGAGCCCTGAATTCGAGCCGCCCTTGTCGAGCGTTACAAAGGTGATAC
GTCGGGCAGTTGGAGACAGTGTCCAAGTGGGGAAGGAGGCCAAGGCAACG
TTTACCCGCGCGGCCGGAATTTTTATATTGTATATTACTGCGTGCGCGAA
TGACTTTTCGAGGGATGGGAAGCGGTCGACACTGACGGCGAACGACGTGT
TTGCTGCCTTGAAGGAGTTGGATTTCGAGGATATGATAGAACCATTACAA
GATTTTCTTAAACGGTCGAGTGAGGAGAAGAAGAACAAGATCGAAAGGAA
GGCGATCCTGAAGAGGGAGGAGGCCGCGGAAGGAGGAGCAGAAAAGGAGG
GAGCTACCTCAGGCAAGGAAGAAGAAGAGGAAGAAGGCAGCGCCGCCGAA
ATGGACCAGGACCAGGACGAGGGCGAGGAAGAGGAAGAGGAGGAGGAAGG
GGAAGAGGGAGAGGGGGAAGGGGAGGATGCAAGTCAGGAGGATGCCAAGG
CACCTTCCGAGATGATGGGGGAGGAAGACGACGAGGAGGAGGAAGAGGAA
GATGAGGAGGCAAATTGA back to top
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