NO19G01240, NO19G01240 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01240
Unique Name	NO19G01240
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2393
Alignment location	chr19:393499..395891 -

Link to JBrowse

Properties


Property Name	Value
Description	Protease-associated RING/U-box zinc finger-containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:393499..395891 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003137	Protease-assoc_domain
IPR001841	Znf_RING

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Homology

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: ETI34240.1 (hypothetical protein F443_19207 [Phytophthora parasitica P1569] >ETL28024.1 hypothetical protein L916_18534 [Phytophthora parasitica] >ETP04135.1 hypothetical protein F441_19020 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 91.3 bits (225), Expect = 1.000e-14
Identity = 100/435 (22.99%), Postives = 154/435 (35.40%), Query Frame = 0

Query:   23 TSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDS-VDREKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHVKPKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRGLRVQKYRRKKPVAGKPSPQQPLVAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSAWG--LPN---LRRLFQKSQPXXXXXXXXKHDSWIDPAAAQYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTCAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCFSPAA 452
            ++LV+E P C    HV   F    +     + + ++  V P  AC  L                   L GKVAL+ R  CNF +K+W AQ+A AAA +V D+ +  E    I+   DE  S I IPSVF+SY +G  L +A                       + + +T++  G +   +     ++ +  Y+ +  ++ +FS    LL +       +  R RA + L + KY R        + Q+ L+ H                                        S  G  +P+   L +  Q  Q          + S  D  A                                                 TC ICLD++EDG  ++ LPC H +H  CI PWL  +S  CP+CK+   +  A
Sbjct:   20 SALVIESPDCRLMTHVSGEFTNLTMLESGGLTNLEIVPVVPFTACEPL---------------RGQDLTGKVALVLRGDCNFVQKVWHAQRAHAAAVVVMDNELRHEPPYHIIMMKDEMASSIRIPSVFISYVSGEWLLDA----------------MSRAVPWNPLRMTLDTNGELPQASTSNRLLKRVIAYIFLISIVCAFSSGLSLLSSAIFQWVGKTRRTRAAKQLPIAKYER--------NMQRTLLEHLLEEQFVLDRIPLAEIENVSKTSDRHTETEPDFSTEMTASSQEGDTVPDDIYLEKEEQMQQKEEPQTDGITYRSSTDSEA------------------------------------------------ETCPICLDDFEDGADVKVLPCQHFFHVDCINPWLEGRSGRCPLCKQDAIATIA 367

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: OWZ22064.1 (BRCA1-associated protein [Phytophthora megakarya])

HSP 1 Score: 90.9 bits (224), Expect = 1.300e-14
Identity = 131/457 (28.67%), Postives = 192/457 (42.01%), Query Frame = 0

Query:    1 MRGVLALATVAGTGVIFMAGGVTSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDS-VDREKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHVKPKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRGLRVQKYRRKKPVAGKPSPQQPLVAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSAWGLPNLRRLFQKSQPXXXXXXXXKHDSWIDPAAAQYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQT-----TCAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCFSPAA 452
            MR VL L       +  +A   ++LV+E P C    HV   F  ++  L++ +R  ++  V P  AC  L                  +L GKVAL+ R  CNF +K+W AQ+A AAA +V D+ +  E    I+   D+  S + IPSVF+SY++G  L +A                       + + +TI+  G +   +     ++ +  Y+ +  ++ +FS    LL +       +  R RA + L + KY R        + Q+ L+ H                                               L R+     P        K D+  +  +     XXXXXXXXXXXXXXXXXXXXXXXXXXX                T     TC ICLD++EDG  ++ LPC H +H  CI PWL  +S  CP+CK+   +  A
Sbjct:    1 MRRVLLL-------LALLASVASALVIESPDCRLITHVSGEF-TNLTLLETGLRHFEVVPVSPFTACEPL---------------RGQNLTGKVALVLRGDCNFVQKVWHAQRAHAAAVVVMDNELRHEPPYHIIMMKDDMASSVRIPSVFISYASGEWLLDA----------------RNRALPWNPLRITIDSNGELPQVSTSNRLLKRVIAYIFLISIVCAFSSGLSLLSSAIFQWVGKTRRTRAAKQLPIAKYER--------NMQRTLLEHLLEDQFV----------------------------------------LDRI-----PFAEIENVSKSDNHTNAESELVFSXXXXXXXXXXXXXXXXXXXXXXXXXXXQLQKEAMADEITYRSSTESDSETCPICLDDFEDGADVKVLPCQHFFHVDCINPWLEGRSGRCPLCKQDAIATIA 365

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: OQR82112.1 (caltractin [Thraustotheca clavata])

HSP 1 Score: 89.0 bits (219), Expect = 5.000e-14
Identity = 73/248 (29.44%), Postives = 106/248 (42.74%), Query Frame = 0

Query:   15 VIFMAGGVTSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR---EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHVKPKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRGLRVQKYRRK 260
            ++ ++    +LV+E PCC+   H+PA FG +I      +    +    P DAC + +                + L GK+ L+ R  CNF  K  +AQ A A A IV D   +   E WG  M  +D   S I IPSVF+SY TG  +  A                          LVT+N TG      +Q    E +  YV+ + V+        LLL   V+ +QR  R R+ + L V+ Y+ K
Sbjct:   17 LVLLSASSMALVIESPCCTVASHIPAHFGRNISDNVPELTQSPIVSAIPFDACGEYL---------------ENDLTGKMVLVVRGKCNFAWKATQAQNANATAIIVMDDKLKSPDEIWGVHMI-SDGNASEIQIPSVFISYQTGQDILRALNSTDIP------------------TLVTLNTTGQGVATFRQHSIFEGIVLYVLTTSVMFVVLSAICLLLGKVVSWHQRTARTRSAKRLPVRNYQIK 230

HSP 2 Score: 60.8 bits (146), Expect = 1.500e-5
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 0

Query:  401 CAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKR 445
            C+ICL+ +E   L++ LPC H YH  CI PWL  ++  CP+CKR
Sbjct:  236 CSICLEIFEQDTLVKVLPCGHEYHQECIDPWLENRNGQCPLCKR 279

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: OQR81375.1 (hypothetical protein THRCLA_23389 [Thraustotheca clavata])

HSP 1 Score: 86.7 bits (213), Expect = 2.500e-13
Identity = 63/208 (30.29%), Postives = 94/208 (45.19%), Query Frame = 0

Query:   23 TSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR---EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHVKPKTKQIG----PIETLATYVVVSLVLLS 224
            ++LV+E+PCC+K  H+ A FG  + + D   R  ++    P  +C+ L                 + L GK+AL+KR GCNF+ K+  AQ+A A A IVYD   R   E W   M      +S + IPSVFVS+ +G  L                            +LVT+N TG + P           +ET   Y V+++V ++
Sbjct:   16 SALVIERPCCAKLRHIHARFGRRVTNSDEYTR-LEVATAVPIQSCAPL----------------RNDLHGKIALVKRGGCNFSYKVLNAQRAHAKAVIVYDDYPRQRNESWAIRMVPDHTNSSSVFIPSVFVSHESGDRL---------------LATIDIMASVNETLLVTLNSTGEILPLATPAAVYQESLETSLMYFVLAIVCIA 191

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: XP_008616733.1 (hypothetical protein SDRG_12438 [Saprolegnia diclina VS20] >EQC29894.1 hypothetical protein SDRG_12438 [Saprolegnia diclina VS20])

HSP 1 Score: 85.1 bits (209), Expect = 7.300e-13
Identity = 65/206 (31.55%), Postives = 92/206 (44.66%), Query Frame = 0

Query:   23 TSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR---EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHV-----KPKTKQIGPIETLATYVVVSLV 221
            ++LVV++PCC+   H+ A FG  + + D      +L    P D C  L                   L GKVAL++R GCNF  KI +AQ+A A A IV D+  R   E W   M   +  +S + +PSVFVSY TG  L +                         VV V +N  G +      P  +    +ET+A Y+V++LV
Sbjct:   20 SALVVQEPCCATLRHIHARFGRRVGNADE-YSGLELVAARPLDGCRPL----------------RQDLTGKVALVQRGGCNFAFKILQAQRAHAKAVIVMDNYPRPRNESWAIRMVPDNGNSSSVFVPSVFVSYETGDRLLST---------------LQLMREYGGVVRVALNHIGEILPLATAPAIQYQESLETMALYLVLALV 193

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: XP_012206535.1 (hypothetical protein SPRG_12177 [Saprolegnia parasitica CBS 223.65] >KDO22750.1 hypothetical protein SPRG_12177 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 84.7 bits (208), Expect = 9.500e-13
Identity = 64/206 (31.07%), Postives = 93/206 (45.15%), Query Frame = 0

Query:   23 TSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR---EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHV-----KPKTKQIGPIETLATYVVVSLV 221
            ++LVV++PCC+   H+ A FG  + + D      +L    P D C  L                   L GKVAL++R GCNF  KI +AQ+A A A IV D+  R   E W   M   +  ++ + +PSVFVS+ TG  L +                         VV V +N TG +      P  +    +ET+A Y+V++LV
Sbjct:   14 SALVVQEPCCATLRHIHARFGRRVGNADE-YSGLELVAARPLDGCRPL----------------RQDLTGKVALVQRGGCNFAFKILQAQRAHAKAVIVMDNYPRPRNESWAIRMVPDNGNSTSVVVPSVFVSHETGDRLLST---------------LQLMREYGGVVRVALNRTGEILPLATAPAIQYQESLETMALYLVLALV 187

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: XP_012212533.1 (hypothetical protein SPRG_15616 [Saprolegnia parasitica CBS 223.65] >KDO16761.1 hypothetical protein SPRG_15616 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 84.0 bits (206), Expect = 1.600e-12
Identity = 65/214 (30.37%), Postives = 95/214 (44.39%), Query Frame = 0

Query:   15 VIFMAGGVTSLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR---EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHV-----KPKTKQIGPIETLATYVVVSLV 221
            V  ++   ++LVV++PCC+   H+ A FG  + + D      +L    P D C  L                   L GKVAL++R GCNF  KI +AQ+A A A IV D+  R   E W   M   +  ++ + +PSVFVS+ TG  L                           VV V +N TG +      P  +    +ET+A Y+V++LV
Sbjct:    9 VAVLSALTSALVVQEPCCATLRHIHARFGRRVGNTDE-YSGLELVAARPLDGCRPL----------------RQDLTGKVALVQRGGCNFAFKILQAQRAHAKAVIVMDNYPRPRNESWAIRMVPDNGNSTSVVVPSVFVSHETGDRLLGT---------------LQLMREYGGVVRVALNRTGEILPLATAPAIQYQESLETMALYLVLALV 190

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: XP_009828032.1 (hypothetical protein, variant 1 [Aphanomyces astaci] >ETV82363.1 hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12
Identity = 68/210 (32.38%), Postives = 94/210 (44.76%), Query Frame = 0

Query:   22 VTSLVVEQPCCSKHLHVPAAFG----PDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR--EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGH--VKPKTKQIGPIETLATYVVVSLVLLS 224
            + +LV+++PCC+   HVPA FG     D++ L       +L VV P DAC  +                 + L GKVAL+ R  CNF  K+ +AQ A A A +V D+  R    W   M G     S++ IPSVFVS + GL L  +                         VLVT+N TG   VK K+  I     +   V V +VL++
Sbjct:   22 LNALVIDRPCCNVERHVPARFGHLYPKDVVQL-------ELVVVRPFDACGLI----------------RNDLSGKVALMVRGDCNFAHKVLQAQTAGAKAVVVMDNEHRMNNSWVVTMVGDPGNASQVVIPSVFVSRAIGLRLLESIDAMNLADMS---------------VLVTLNSTGQILVKAKSNDITQQNIIMILVGVIMVLVA 193

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: XP_009828033.1 (hypothetical protein, variant 2 [Aphanomyces astaci] >ETV82364.1 hypothetical protein, variant 2 [Aphanomyces astaci])

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12
Identity = 62/188 (32.98%), Postives = 84/188 (44.68%), Query Frame = 0

Query:   22 VTSLVVEQPCCSKHLHVPAAFG----PDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDR--EKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHVKPKTK 204
            + +LV+++PCC+   HVPA FG     D++ L       +L VV P DAC  +                 + L GKVAL+ R  CNF  K+ +AQ A A A +V D+  R    W   M G     S++ IPSVFVS + GL L  +                         VLVT+N TG +  K K
Sbjct:   22 LNALVIDRPCCNVERHVPARFGHLYPKDVVQL-------ELVVVRPFDACGLI----------------RNDLSGKVALMVRGDCNFAHKVLQAQTAGAKAVVVMDNEHRMNNSWVVTMVGDPGNASQVVIPSVFVSRAIGLRLLESIDAMNLADMS---------------VLVTLNSTGQILVKAK 171

[Close]

BLAST of NO19G01240 vs. NCBI_GenBank
Match: XP_012206596.1 (hypothetical protein SPRG_10995 [Saprolegnia parasitica CBS 223.65] >KDO22681.1 hypothetical protein SPRG_10995 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 83.2 bits (204), Expect = 2.800e-12
Identity = 97/426 (22.77%), Postives = 133/426 (31.22%), Query Frame = 0

Query:   24 SLVVEQPCCSKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDREKWGTIMSGT--DEWTSRITIPSVFVSYSTGLALKNAXXXXXXXXXXXXXXXXXXXXXXXSVVLVTINDTGHVKPKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRGLRVQKYRRKKPVAGKPSPQQPLVAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSAWGLPNLRRLFQKSQPXXXXXXXXKHDSWIDPAAAQYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTTCAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCF 448
            +LV+E PCCS+ +H+PA FG         ++  +L +  P D C+ L              +   +  GKV L +R  C F  K   AQ+A A+  IV D VDRE+W   M     D  T  +TIP+VFVS++TG  L                            V V++N TG V   T+ +   +  A +V +    L F      +L      Y  +F    L  L                                                                  W     RR+F              H  W       Y+                                              CAICLDE+     ++ LPC H YH  CI  W  + S  CP+CKRP F
Sbjct:   17 ALVLEAPCCSEKVHIPADFG-----AHHALQEHELLLASPLDLCAPL--------------ARELNATGKVLLARRGKCRFVTKALLAQRANASGLIVMDDVDRERWEVRMHSDEHDATTPAMTIPAVFVSHATGREL--------------------AAHVRAGYVAVSLNGTGEVDTITQYLERYDLSAEHVRLVHAALDFGQA---MLPYMGYAYAISFAYVLLSSLYTLLLN------------------------------------------------------------WSAAVARRMF-------------LHGPWRHLNVVSYS--------------------------------QHLDLMMLSGDAACCAICLDEFGPCHQIKPLPCTHIYHRSCIDKWFEKGSNACPLCKRPAF 295

The following BLAST results are available for this feature:

BLAST of NO19G01240 vs. NCBI_GenBank

BLAST of NO19G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
ETI34240.1	1.000e-14	22.99	hypothetical protein F443_19207 [Phytophthora para...	[more]
OWZ22064.1	1.300e-14	28.67	BRCA1-associated protein [Phytophthora megakarya]	[more]
OQR82112.1	5.000e-14	29.44	caltractin [Thraustotheca clavata]	[more]
OQR81375.1	2.500e-13	30.29	hypothetical protein THRCLA_23389 [Thraustotheca c...	[more]
XP_008616733.1	7.300e-13	31.55	hypothetical protein SDRG_12438 [Saprolegnia dicli...	[more]
XP_012206535.1	9.500e-13	31.07	hypothetical protein SPRG_12177 [Saprolegnia paras...	[more]
XP_012212533.1	1.600e-12	30.37	hypothetical protein SPRG_15616 [Saprolegnia paras...	[more]
XP_009828032.1	2.800e-12	32.38	hypothetical protein, variant 1 [Aphanomyces astac...	[more]
XP_009828033.1	2.800e-12	32.98	hypothetical protein, variant 2 [Aphanomyces astac...	[more]
XP_012206596.1	2.800e-12	22.77	hypothetical protein SPRG_10995 [Saprolegnia paras...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL013	nonsL013	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL012	nonsL012	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR034	ncniR034	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR039	ngnoR039	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR037	ngnoR037	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK004489	NSK004489	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO19G01240.1	NO19G01240.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545281	gene_7518	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100191g7	gene6805	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO19G01240.1	NO19G01240.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO19G01240 ID=NO19G01240|Name=NO19G01240|organism=Nannochloropsis oceanica|type=gene|length=2393bp
AATCACAGCGAGCGTCCTGTCATTAATATACATGTCAGCGGATCCAAGTC
TGGTTGGATCGTAGCTTTATCTGTAAAACGTTGGCAGACGCACCAAGCCA
AGCCAAATCGGAAATCTGGCGTGGCAATCAAGTATCAAACCAGCACTTAG
TCAAACACACGCGAGTGGACAGCTGCACGCACATCAGCCCTAGCCGCGCA
CAAACTAACCCTAGCTAGCATGCGAGGGGTGCTGGCTTTGGCCACTGTTG
CCGGTACAGGCGTCATTTTCATGGCTGGCGGGGTAACATCCCTTGTTGTC
GAGCAGCCCTGCTGTTCGAAGCATCTGCATGTgtaagtctctctgtttct
tctttcttgtatgtgcgtgtcctactcgccagctgttgcatggtctttta
cgaataagaagcctccgctctatcccttctcgtccctcccatcatcctcc
tctcactcaatcctctccccggcttcacaaacagcctgttttatcaatcc
tcttccgaaaactcacacgcccttctccctgatccttttccacccattta
cacacgtgcgtagCCCCGCCGCGTTTGGTCCGGACATCCTTTCCCTGGAT
TCCCCTATTCGTTCCCGCCAGCTCTTCGTCGTTGAACCGGAAGACGCCTG
CTCCGACCTAATCTTTCCCACGAAATTCAGCGCCTTGCCCCAGCCATCCT
CTTCCTCTTCCTCTTCATTGAGAGGGAAAGTCGCCTTGATCAAAAGGGAC
GGATGCAATTTCACGGAAAAGATTTGGCGGGCCCAGCAAGCGCAAGCCGC
TGCCGCCATAGTGTACGACTCGGTGGATCGAGAGAAATGGGGCACCATCA
TGTCAGGCACCGACGAATGGACCTCCCGCATCACCATCCCCTCTGTTTTC
GTCTCCTACTCCACGGGACTAGCCCTCAAGAATGCCGCACAGCAACAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGTATCGACAGAAGCAACTCGATG
GTGGTAGCGTCGTGTTGGTCACCATCAACGACACCGGGCACGTCAAACCC
AAAACGAAACAGATTGGTCCCATCGAAACACTGGCAACATACGTGGTAGT
CTCCCTTGTCCTCCTCTCCTTCTCGGGCTGCTGCGGCTTACTGCTTGCCC
TCTGTGTCACCTGCTACCAGCGTGCGTTTCGACAGCGGGCCTTGCGGGGA
CTCCGGGTGCAGAAATATAGAAGGAAGAAGCCTGTCGCTGGGAAGCCGTC
GCCACAGCAGCCGCTGGTAGCTCACAGCAGCAGCGACAGCCGCAGTAGCA
GCAATAGTAATTGTAGTAATGGTACCCATACCTCTGCTTCTTTGCTGGCG
CCAGGTGGCAGTAATCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCAGCGC
GTGGGGCCTGCCAAATCTGCGTCGACTTTTCCAGAAGTCACAACCACAAC
CGCAGCAGCAGCAGCGACGGAAACATGATTCGTGGATTGATCCCGCAGCA
GCGCAATATACAGCAGCAGGGACAGCAGCAGGAGCAGCAGGAGCAGGAGC
AGGAGCAAGAGTAGGAGCACCAGCAGCCGAAGGAAGAGTATCGGGAGGAG
CGAAAGGGGCGGAATGGGGGGAGAGGGACGGAGAGGACGACCAAACGACG
TGTGCTATCTGCCTGGATGAATATGAGGATGGGGACCTCCTGCGATTCCT
CCCCTGTCATCACCGGTACCATGACAGGTGTATTTTACCCTGGTTATTGG
AAAAGTCAGAGATGTGCCCAATGTGTAAGCGACCTTGTTTCTCCCCTGCC
GCCCCTCAGGTGGCTCGTGCGGTTGCGGGTGGTAGTGAAGGAGGGGAAGT
GGAAGGGTCTTCATCTTCTACATTGTTGGGAGGAGAAGGGGGACGAGGGG
GACGAGAGATGGAGGGAGAAGGGACAAGAGGGGCCTATGCCAACACATTG
GACGTGCAGATTTTGGATGAGGTGGTTTTATTTTTGACAAACAATTTGTC
ATTGATGGCCATGCTGGTGGTGGGGGTTGTGACATGCTGTGTGTTGTTGG
GGGCGGTGGCCTTGTTGCAGCCGGACGCTTGAGTTTGAGTGCGAGGGGGG
ATAACGAAGGTTGGTTGACGAAGGTATTTTTTTTCTGGGAAATGACACAA
AAGACAAGACACGGAGAAAAGGATTTACATAGAGTACAGAAATAAACAGT
AATAAACAGATAGACCTGACTTGCAGAGGAAGAGTGTATATTTTCAACAG
GAGTGGAGTAAGAAGCGGATGGTTAGGGGTGGTTCACACACTTGCAGCAC
GTGTGTCATCTTGTCCATGACGGGTAGGTGGGTAGGGGTAGGGCTGTGGA
TAAACGCAAAGGAACATTAACAAAAGAAGAAATTTGGACAGGG

protein sequence of NO19G01240.1

>NO19G01240.1-protein ID=NO19G01240.1-protein|Name=NO19G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MRGVLALATVAGTGVIFMAGGVTSLVVEQPCCSKHLHVPAAFGPDILSLD
SPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRD
GCNFTEKIWRAQQAQAAAAIVYDSVDREKWGTIMSGTDEWTSRITIPSVF
VSYSTGLALKNAAQQQQQQQQQQQQQYRQKQLDGGSVVLVTINDTGHVKP
KTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRG
LRVQKYRRKKPVAGKPSPQQPLVAHSSSDSRSSSNSNCSNGTHTSASLLA
PGGSNRSSSSSSSRCSAWGLPNLRRLFQKSQPQPQQQQRRKHDSWIDPAA
AQYTAAGTAAGAAGAGAGARVGAPAAEGRVSGGAKGAEWGERDGEDDQTT
CAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCFSPA
APQVARAVAGGSEGGEVEGSSSSTLLGGEGGRGGREMEGEGTRGAYANTL
DVQILDEVVLFLTNNLSLMAMLVVGVVTCCVLLGAVALLQPDA*

Synonyms

Publications