NO19G01240.1, NO19G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01240.1
Unique NameNO19G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2162
Alignment locationchr19:393499..395891 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:393499..395891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01240.1 vs.
Match: EWM23657.1 (protease-associated RING/U-box zinc finger-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 454.5 bits (1168), Expect = 4.600e-124
Identity = 290/529 (54.82%), Postives = 343/529 (64.84%), Query Frame = 0 
Query:   33 SKHLHVPAAFGPDILSLDSPIRSRQLFVVEPEDACSDLI-----FPTKFSALPQPSSSSSSSLRGKVALIKRDGCNFTEKIWRAQQAQAAAAIVYDSVDREKWGTIMSGTDEWTSRITIPSVFVSYSTGLALKNAAQQQQQQQQQQQQQYRQKQLDGGSVVLVTINDTGHVKPKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRGLRVQKYRRKKPVAGKPSPQQPLVAHSSSDSRSSSNSNCSNGTHTSASLLAPGGSNRSSSSSSSRCSAWGLPNLRRLFQKSQPQPQQQQRRKHDSWIDPAAAQYTAAGTAAGAAGAGAGARVGAPAAEGRVSG-GAKGAEWGERDGEDDQTTCAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCFSPAAPQVARAVAGGSE-GGEVEGSSSSTLLGGE--------GGRGGREMEGEGT-----RGAYANTLDVQILDEVVLFLTNNLSLMAMLVVGVVTCCVLLGAVALLQP 542
            S H   PAAFGP+IL L+SP+ +R+L +VEPEDACSDL      +   F +   PSS S+ SLRG++ALIKR+GCNFTEK+WRAQQA+AA  IVYDS  RE+WGTIMSG +EWTSRITIPSVFVS+STGL+L+NA  Q ++Q             +G + V VT+NDTGHV+ KTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFR RALRGL+V+KY+RKK        QQPL+A++S D  SS++++ S       +LL+                 WGL +LRR+  K      Q+ R        P      A+G      G       G   A     G GA    W E   E++QTTCAICLDEYEDGDLLRFLPC HRYHD+CILPWLLEKSE CPMCKRPCFS   P+      GGSE  G  E ++++  L           GG G R  E EG+        Y  TLDVQILDE+VLFLTNNLSL+AML+VGVVTCCVLLGA   L P
Sbjct:    3 STHCIKPAAFGPNILGLESPLHARELVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGRIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSS-------GPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKK------VSQQPLLAYNSKDKGSSASTSPS-------ALLSRASPTSLPDRRKGLRGLWGLLSLRRVINK------QRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDGEAPTACEGVGASKDSWSE---EEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCFS-TVPR-----PGGSERRGRQETAATTIALSSRAHERWEEGGGEGRRRQEREGSAQGPDSATYPPTLDVQILDEIVLFLTNNLSLLAMLLVGVVTCCVLLGAEKKLAP 496
The following BLAST results are available for this feature:
BLAST of NO19G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23657.14.600e-12454.82protease-associated RING/U-box zinc finger-contain... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01240NO19G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01240.1NO19G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01240.1.cds1NO19G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01240.1.cds2NO19G01240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01240.1 ID=NO19G01240.1|Name=NO19G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp
AATCACAGCGAGCGTCCTGTCATTAATATACATGTCAGCGGATCCAAGTC
TGGTTGGATCGTAGCTTTATCTGTAAAACGTTGGCAGACGCACCAAGCCA
AGCCAAATCGGAAATCTGGCGTGGCAATCAAGTATCAAACCAGCACTTAG
TCAAACACACGCGAGTGGACAGCTGCACGCACATCAGCCCTAGCCGCGCA
CAAACTAACCCTAGCTAGCATGCGAGGGGTGCTGGCTTTGGCCACTGTTG
CCGGTACAGGCGTCATTTTCATGGCTGGCGGGGTAACATCCCTTGTTGTC
GAGCAGCCCTGCTGTTCGAAGCATCTGCATGTCCCCGCCGCGTTTGGTCC
GGACATCCTTTCCCTGGATTCCCCTATTCGTTCCCGCCAGCTCTTCGTCG
TTGAACCGGAAGACGCCTGCTCCGACCTAATCTTTCCCACGAAATTCAGC
GCCTTGCCCCAGCCATCCTCTTCCTCTTCCTCTTCATTGAGAGGGAAAGT
CGCCTTGATCAAAAGGGACGGATGCAATTTCACGGAAAAGATTTGGCGGG
CCCAGCAAGCGCAAGCCGCTGCCGCCATAGTGTACGACTCGGTGGATCGA
GAGAAATGGGGCACCATCATGTCAGGCACCGACGAATGGACCTCCCGCAT
CACCATCCCCTCTGTTTTCGTCTCCTACTCCACGGGACTAGCCCTCAAGA
ATGCCGCACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAT
CGACAGAAGCAACTCGATGGTGGTAGCGTCGTGTTGGTCACCATCAACGA
CACCGGGCACGTCAAACCCAAAACGAAACAGATTGGTCCCATCGAAACAC
TGGCAACATACGTGGTAGTCTCCCTTGTCCTCCTCTCCTTCTCGGGCTGC
TGCGGCTTACTGCTTGCCCTCTGTGTCACCTGCTACCAGCGTGCGTTTCG
ACAGCGGGCCTTGCGGGGACTCCGGGTGCAGAAATATAGAAGGAAGAAGC
CTGTCGCTGGGAAGCCGTCGCCACAGCAGCCGCTGGTAGCTCACAGCAGC
AGCGACAGCCGCAGTAGCAGCAATAGTAATTGTAGTAATGGTACCCATAC
CTCTGCTTCTTTGCTGGCGCCAGGTGGCAGTAATCGCAGCAGCAGCAGCA
GCAGCAGCCGCTGCAGCGCGTGGGGCCTGCCAAATCTGCGTCGACTTTTC
CAGAAGTCACAACCACAACCGCAGCAGCAGCAGCGACGGAAACATGATTC
GTGGATTGATCCCGCAGCAGCGCAATATACAGCAGCAGGGACAGCAGCAG
GAGCAGCAGGAGCAGGAGCAGGAGCAAGAGTAGGAGCACCAGCAGCCGAA
GGAAGAGTATCGGGAGGAGCGAAAGGGGCGGAATGGGGGGAGAGGGACGG
AGAGGACGACCAAACGACGTGTGCTATCTGCCTGGATGAATATGAGGATG
GGGACCTCCTGCGATTCCTCCCCTGTCATCACCGGTACCATGACAGGTGT
ATTTTACCCTGGTTATTGGAAAAGTCAGAGATGTGCCCAATGTGTAAGCG
ACCTTGTTTCTCCCCTGCCGCCCCTCAGGTGGCTCGTGCGGTTGCGGGTG
GTAGTGAAGGAGGGGAAGTGGAAGGGTCTTCATCTTCTACATTGTTGGGA
GGAGAAGGGGGACGAGGGGGACGAGAGATGGAGGGAGAAGGGACAAGAGG
GGCCTATGCCAACACATTGGACGTGCAGATTTTGGATGAGGTGGTTTTAT
TTTTGACAAACAATTTGTCATTGATGGCCATGCTGGTGGTGGGGGTTGTG
ACATGCTGTGTGTTGTTGGGGGCGGTGGCCTTGTTGCAGCCGGACGCTTG
AGTTTGAGTGCGAGGGGGGATAACGAAGGTTGGTTGACGAAGGTATTTTT
TTTCTGGGAAATGACACAAAAGACAAGACACGGAGAAAAGGATTTACATA
GAGTACAGAAATAAACAGTAATAAACAGATAGACCTGACTTGCAGAGGAA
GAGTGTATATTTTCAACAGGAGTGGAGTAAGAAGCGGATGGTTAGGGGTG
GTTCACACACTTGCAGCACGTGTGTCATCTTGTCCATGACGGGTAGGTGG
GTAGGGGTAGGGCTGTGGATAAACGCAAAGGAACATTAACAAAAGAAGAA
ATTTGGACAGGG
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protein sequence of NO19G01240.1

>NO19G01240.1-protein ID=NO19G01240.1-protein|Name=NO19G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MRGVLALATVAGTGVIFMAGGVTSLVVEQPCCSKHLHVPAAFGPDILSLD
SPIRSRQLFVVEPEDACSDLIFPTKFSALPQPSSSSSSSLRGKVALIKRD
GCNFTEKIWRAQQAQAAAAIVYDSVDREKWGTIMSGTDEWTSRITIPSVF
VSYSTGLALKNAAQQQQQQQQQQQQQYRQKQLDGGSVVLVTINDTGHVKP
KTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRQRALRG
LRVQKYRRKKPVAGKPSPQQPLVAHSSSDSRSSSNSNCSNGTHTSASLLA
PGGSNRSSSSSSSRCSAWGLPNLRRLFQKSQPQPQQQQRRKHDSWIDPAA
AQYTAAGTAAGAAGAGAGARVGAPAAEGRVSGGAKGAEWGERDGEDDQTT
CAICLDEYEDGDLLRFLPCHHRYHDRCILPWLLEKSEMCPMCKRPCFSPA
APQVARAVAGGSEGGEVEGSSSSTLLGGEGGRGGREMEGEGTRGAYANTL
DVQILDEVVLFLTNNLSLMAMLVVGVVTCCVLLGAVALLQPDA*
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mRNA from alignment at chr19:393499..395891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01240.1 ID=NO19G01240.1|Name=NO19G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at chr19:393499..395891- (Nannochloropsis oceanica)
AATCACAGCGAGCGTCCTGTCATTAATATACATGTCAGCGGATCCAAGTC
TGGTTGGATCGTAGCTTTATCTGTAAAACGTTGGCAGACGCACCAAGCCA
AGCCAAATCGGAAATCTGGCGTGGCAATCAAGTATCAAACCAGCACTTAG
TCAAACACACGCGAGTGGACAGCTGCACGCACATCAGCCCTAGCCGCGCA
CAAACTAACCCTAGCTAGCATGCGAGGGGTGCTGGCTTTGGCCACTGTTG
CCGGTACAGGCGTCATTTTCATGGCTGGCGGGGTAACATCCCTTGTTGTC
GAGCAGCCCTGCTGTTCGAAGCATCTGCATGTGTAAGTCTCTCTGTTTCT
TCTTTCTTGTATGTGCGTGTCCTACTCGCCAGCTGTTGCATGGTCTTTTA
CGAATAAGAAGCCTCCGCTCTATCCCTTCTCGTCCCTCCCATCATCCTCC
TCTCACTCAATCCTCTCCCCGGCTTCACAAACAGCCTGTTTTATCAATCC
TCTTCCGAAAACTCACACGCCCTTCTCCCTGATCCTTTTCCACCCATTTA
CACACGTGCGTAGCCCCGCCGCGTTTGGTCCGGACATCCTTTCCCTGGAT
TCCCCTATTCGTTCCCGCCAGCTCTTCGTCGTTGAACCGGAAGACGCCTG
CTCCGACCTAATCTTTCCCACGAAATTCAGCGCCTTGCCCCAGCCATCCT
CTTCCTCTTCCTCTTCATTGAGAGGGAAAGTCGCCTTGATCAAAAGGGAC
GGATGCAATTTCACGGAAAAGATTTGGCGGGCCCAGCAAGCGCAAGCCGC
TGCCGCCATAGTGTACGACTCGGTGGATCGAGAGAAATGGGGCACCATCA
TGTCAGGCACCGACGAATGGACCTCCCGCATCACCATCCCCTCTGTTTTC
GTCTCCTACTCCACGGGACTAGCCCTCAAGAATGCCGCACAGCAACAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGTATCGACAGAAGCAACTCGATG
GTGGTAGCGTCGTGTTGGTCACCATCAACGACACCGGGCACGTCAAACCC
AAAACGAAACAGATTGGTCCCATCGAAACACTGGCAACATACGTGGTAGT
CTCCCTTGTCCTCCTCTCCTTCTCGGGCTGCTGCGGCTTACTGCTTGCCC
TCTGTGTCACCTGCTACCAGCGTGCGTTTCGACAGCGGGCCTTGCGGGGA
CTCCGGGTGCAGAAATATAGAAGGAAGAAGCCTGTCGCTGGGAAGCCGTC
GCCACAGCAGCCGCTGGTAGCTCACAGCAGCAGCGACAGCCGCAGTAGCA
GCAATAGTAATTGTAGTAATGGTACCCATACCTCTGCTTCTTTGCTGGCG
CCAGGTGGCAGTAATCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCAGCGC
GTGGGGCCTGCCAAATCTGCGTCGACTTTTCCAGAAGTCACAACCACAAC
CGCAGCAGCAGCAGCGACGGAAACATGATTCGTGGATTGATCCCGCAGCA
GCGCAATATACAGCAGCAGGGACAGCAGCAGGAGCAGCAGGAGCAGGAGC
AGGAGCAAGAGTAGGAGCACCAGCAGCCGAAGGAAGAGTATCGGGAGGAG
CGAAAGGGGCGGAATGGGGGGAGAGGGACGGAGAGGACGACCAAACGACG
TGTGCTATCTGCCTGGATGAATATGAGGATGGGGACCTCCTGCGATTCCT
CCCCTGTCATCACCGGTACCATGACAGGTGTATTTTACCCTGGTTATTGG
AAAAGTCAGAGATGTGCCCAATGTGTAAGCGACCTTGTTTCTCCCCTGCC
GCCCCTCAGGTGGCTCGTGCGGTTGCGGGTGGTAGTGAAGGAGGGGAAGT
GGAAGGGTCTTCATCTTCTACATTGTTGGGAGGAGAAGGGGGACGAGGGG
GACGAGAGATGGAGGGAGAAGGGACAAGAGGGGCCTATGCCAACACATTG
GACGTGCAGATTTTGGATGAGGTGGTTTTATTTTTGACAAACAATTTGTC
ATTGATGGCCATGCTGGTGGTGGGGGTTGTGACATGCTGTGTGTTGTTGG
GGGCGGTGGCCTTGTTGCAGCCGGACGCTTGAGTTTGAGTGCGAGGGGGG
ATAACGAAGGTTGGTTGACGAAGGTATTTTTTTTCTGGGAAATGACACAA
AAGACAAGACACGGAGAAAAGGATTTACATAGAGTACAGAAATAAACAGT
AATAAACAGATAGACCTGACTTGCAGAGGAAGAGTGTATATTTTCAACAG
GAGTGGAGTAAGAAGCGGATGGTTAGGGGTGGTTCACACACTTGCAGCAC
GTGTGTCATCTTGTCCATGACGGGTAGGTGGGTAGGGGTAGGGCTGTGGA
TAAACGCAAAGGAACATTAACAAAAGAAGAAATTTGGACAGGG
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Coding sequence (CDS) from alignment at chr19:393499..395891-

>NO19G01240.1 ID=NO19G01240.1|Name=NO19G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr19:393499..395891- (Nannochloropsis oceanica)
ATGCGAGGGGTGCTGGCTTTGGCCACTGTTGCCGGTACAGGCGTCATTTT
CATGGCTGGCGGGGTAACATCCCTTGTTGTCGAGCAGCCCTGCTGTTCGA
AGCATCTGCATGTCCCCGCCGCGTTTGGTCCGGACATCCTTTCCCTGGAT
TCCCCTATTCGTTCCCGCCAGCTCTTCGTCGTTGAACCGGAAGACGCCTG
CTCCGACCTAATCTTTCCCACGAAATTCAGCGCCTTGCCCCAGCCATCCT
CTTCCTCTTCCTCTTCATTGAGAGGGAAAGTCGCCTTGATCAAAAGGGAC
GGATGCAATTTCACGGAAAAGATTTGGCGGGCCCAGCAAGCGCAAGCCGC
TGCCGCCATAGTGTACGACTCGGTGGATCGAGAGAAATGGGGCACCATCA
TGTCAGGCACCGACGAATGGACCTCCCGCATCACCATCCCCTCTGTTTTC
GTCTCCTACTCCACGGGACTAGCCCTCAAGAATGCCGCACAGCAACAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGTATCGACAGAAGCAACTCGATG
GTGGTAGCGTCGTGTTGGTCACCATCAACGACACCGGGCACGTCAAACCC
AAAACGAAACAGATTGGTCCCATCGAAACACTGGCAACATACGTGGTAGT
CTCCCTTGTCCTCCTCTCCTTCTCGGGCTGCTGCGGCTTACTGCTTGCCC
TCTGTGTCACCTGCTACCAGCGTGCGTTTCGACAGCGGGCCTTGCGGGGA
CTCCGGGTGCAGAAATATAGAAGGAAGAAGCCTGTCGCTGGGAAGCCGTC
GCCACAGCAGCCGCTGGTAGCTCACAGCAGCAGCGACAGCCGCAGTAGCA
GCAATAGTAATTGTAGTAATGGTACCCATACCTCTGCTTCTTTGCTGGCG
CCAGGTGGCAGTAATCGCAGCAGCAGCAGCAGCAGCAGCCGCTGCAGCGC
GTGGGGCCTGCCAAATCTGCGTCGACTTTTCCAGAAGTCACAACCACAAC
CGCAGCAGCAGCAGCGACGGAAACATGATTCGTGGATTGATCCCGCAGCA
GCGCAATATACAGCAGCAGGGACAGCAGCAGGAGCAGCAGGAGCAGGAGC
AGGAGCAAGAGTAGGAGCACCAGCAGCCGAAGGAAGAGTATCGGGAGGAG
CGAAAGGGGCGGAATGGGGGGAGAGGGACGGAGAGGACGACCAAACGACG
TGTGCTATCTGCCTGGATGAATATGAGGATGGGGACCTCCTGCGATTCCT
CCCCTGTCATCACCGGTACCATGACAGGTGTATTTTACCCTGGTTATTGG
AAAAGTCAGAGATGTGCCCAATGTGTAAGCGACCTTGTTTCTCCCCTGCC
GCCCCTCAGGTGGCTCGTGCGGTTGCGGGTGGTAGTGAAGGAGGGGAAGT
GGAAGGGTCTTCATCTTCTACATTGTTGGGAGGAGAAGGGGGACGAGGGG
GACGAGAGATGGAGGGAGAAGGGACAAGAGGGGCCTATGCCAACACATTG
GACGTGCAGATTTTGGATGAGGTGGTTTTATTTTTGACAAACAATTTGTC
ATTGATGGCCATGCTGGTGGTGGGGGTTGTGACATGCTGTGTGTTGTTGG
GGGCGGTGGCCTTGTTGCAGCCGGACGCTTGA
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Synonyms
Publications